Displaying publications 1 - 20 of 338 in total

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  1. Hashim R, Jackson DC
    Trop Life Sci Res, 2009 Dec;20(2):29-47.
    PMID: 24575177 MyJurnal
    A three-year study (July 2000 - June 2003) of fish assemblages was conducted in four tributaries of the Big Black River: Big Bywy, Little Bywy, Middle Bywy and McCurtain creeks that cross the Natchez Trace Parkway, Choctaw County, Mississippi, USA. Little Bywy and Middle Bywy creeks were within watersheds influenced by the lignite mining. Big Bywy and Middle Bywy creeks were historically impacted by channelisation. McCurtain Creek was chosen as a reference (control) stream. Fish were collected using a portable backpack electrofishing unit (Smith-Root Inc., Washington, USA). Insectivorous fish dominated all of the streams. There were no pronounced differences in relative abundances of fishes among the streams (P > 0.05) but fish assemblages fluctuated seasonally. Although there were some differences among streams with regard to individual species, channelisation and lignite mining had no discernable adverse effects on functional components of fish assemblages suggesting that fishes in these systems are euryceous fluvial generalist species adapted to the variable environments of small stream ecosystems.
  2. Hamzah KA, Ismail P, Kassim AR, Hassan CH, Akeng G, Said NM
    Trop Life Sci Res, 2009 Dec;20(2):15-27.
    PMID: 24575176 MyJurnal
    Tropical peat swamp forest (PSF) is a unique wetland ecosystem with distinct vegetation types. Due to the waterlogged environment, the stand characteristics in this ecosystem are different from those of other inland forests. This paper highlights stand characteristics of a PSF based on our investigation of a 1 ha ecological plot established in a Virgin Jungle Reserve (VJR) at Compartment 100, Pekan Forest Reserve, Pahang, Malaysia. This site is considered a Gonystylus bancanus-rich area. From the inventory, we recorded a total of 49 tree species from 38 genera and 25 families among all trees of ≥ 10 cm in diameter at breast height. Calophyllum ferrugineum var. ferrugineum was the most abundant species, followed by G. bancanus. The forest appeared healthy, as all tree characteristics (crown shape, log grade and climber infestation) generally fell within Classes 1 and 2 (good and moderate categories), with the exception of crown illumination which majority of the trees were rated as class 3 (received less sunlight). The latter finding indicates that most of the trees living under the canopy received minimal illumination. In terms of total tree biomass, we estimated that about 414.6 tonnes exist in this 1 ha area; this tree biomass is higher than in some PSF areas of Sumatra, Indonesia.
  3. Arsad H, Sudesh K, Nazalan N, Muhammad TS, Wahab H, Razip Samian M
    Trop Life Sci Res, 2009 Dec;20(2):1-14.
    PMID: 24575175 MyJurnal
    The (R)-3-hydroxyacyl-ACP-CoA transferase catalyses the conversion of (R)-3-hydroxyacyl-ACP to (R)-3-hydroxyacyl-CoA derivatives, which serves as the ultimate precursor for polyhydroxyalkanoate (PHA) polymerisation from unrelated substrates in pseudomonads. PhaG was found to be responsible for channelling precursors for polyhydroxyalkanoate (PHA) synthase from a de novo fatty acid biosynthesis pathway when cultured on carbohydrates, such as glucose or gluconate. The phaG gene was cloned from Pseudomonas sp. USM 4-55 using a homologous probe. The gene was located in a 3660 bp Sal I fragment (GenBank accession number EU305558). The open reading frame (ORF) was 885 bp long and encoded a 295 amino acid protein. The predicted molecular weight was 33251 Da, and it showed a 62% identity to the PhaG of Pseudomonas aeruginosa. The function of the cloned phaG of Pseudomonas sp. USM 4-55 was confirmed by complementation studies. Plasmid pBCS39, which harboured the 3660 bp Sal I fragment, was found to complement the PhaG-mutant heterologous host cell, Pseudomonas putida PhaGN-21. P. putida PhaGN-21, which harboured pBCS39, accumulated PHA that accounted for up to 18% of its cellular dry weight (CDW). P. putida PhaGN-21, which harboured the vector alone (PBBR1MCS-2), accumulated only 0.6% CDW of PHA.
  4. Arullappan S, Zakaria Z, Basri DF
    Trop Life Sci Res, 2009 Dec;20(2):109-18.
    PMID: 24575183 MyJurnal
    Hibiscus rosa sinensis, a member of the Malvaceae family, is widely cultivated in the tropics as an ornamental plant. It is often planted as a fence or hedge plant, and has several forms of flowers with varying colours. It is also used in traditional medicine to induce abortion, ease menstrual cramps, assist in childbirth and relieve headache, fever and inflammation. In this study, we evaluated the antibacterial activity of H. rosa sinesis extract using a disc diffusion method. Crude petroleum ether extract, ethyl acetate extract and methanol extract from the leaves, stems and flowers of the plant were prepared using a cold extraction technique. These extracts were tested at concentrations ranging from 4 mg/disc to 0.017 mg/disc against methicillin-resistant Staphylococcus aureus (MRSA), Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa and Klebsiella pneumonia. The petroleum ether extract from the leaves, stems and flowers and methanol extract from the leaves showed inhibition zones with diameters > 12 mm against MRSA. Overall, the petroleum ether extract from flowers at concentrations of 4 mg/disc and 2 mg/disc displayed the strongest inhibition zones of 18.6 ± 2.85 mm and 18.5 ± 0.29 mm, respectively, as compared to vancomycin (30 μg/ml), which did not differ significantly from the 18.0 ± 0.10 mm size of the vancomycin (30 μg/ml) inhibition zone (p < 0.05). In conclusion, H. rosa sinensis extract is a potential antibacterial agent for treating MRSA infection.
  5. Shah AS, Hashim ZH, Sah SA
    Trop Life Sci Res, 2009 Dec;20(2):59-70.
    PMID: 24575179 MyJurnal
    A total of 37 fish species from 14 families were observed during surveys conducted from January to March 2005 at 8 selected streams near the Gunung Jerai Forest Reserve. The list includes two species (Rasbora trilineata and Systomus partipentazona) that were visually identified at the lower part of the Sungai Teroi stream. Single specimens of Leiocassis micropogon, Clarias macrocephalus and Hampala macrolepidota were also obtained at certain sampling stations. Devario regina and Systomus binotatus were the most abundant species at all sampling stations. However, the list is still incomplete as the study was carried out over a short time period and there are large areas that have not yet been surveyed. The presence of exotic species (Carassius auratus) at Sungai Badak indicates anthropogenic influences. Therefore, a long-term monitoring program for Gunung Jerai Forest Reserve streams should be planned and carried out to assess the impacts of future development on fish biodiversity and water quality.
  6. Jaafar I, Chai TC, Sah SA, Akil MA
    Trop Life Sci Res, 2009 Dec;20(2):49-57.
    PMID: 24575178 MyJurnal
    A survey was conducted to catalogue the diversity of anurans in District IV of the Muda Agriculture Development Authority Scheme (MADA) in Kedah Darul Aman, Malaysia, from July 1996 to January 1997. Eight species of anurans from three families were present in the study area. Of these, the Common Grass Frog (Fejevarya limnocharis) was the most abundant, followed by Mangrove Frog (Fejevarya cancrivora), Long-legged Frog (Hylarana macrodactyla), and Common Toad (Duttaphrynus melanostictus). Puddle Frog (Occidozyga lima), Taiwanese Giant Frog (Hoplobatrachus rugulosus), and Banded Bullfrog (Kaluola pulchra) were rare during the sampling period, and only one Paddy Frog (Hylarana erythraea) was captured. A simple identification key for the anurans of this area is included for use by scientists and laymen alike.
  7. Om AC, Ghazali AH, Keng CL, Ishak Z
    Trop Life Sci Res, 2009 Dec;20(2):71-7.
    PMID: 24575180 MyJurnal
    Introduction of diazotrophic rhizobacteria to oil palm tissues during the in vitro micropropagation process establishes an early associative interaction between the plant cells and bacteria. In the association, the diazotrophs provide the host plants with phytohormones and fixed nitrogen. This study was conducted to observe growth of bacterised tissue cultured oil palm plants under ex vitro conditions after 280 days of growth. Root dry weight, shoot dry weight, root volume, bacterial colonisation, leaf protein and chlorophyll content of the host plants were observed. The results revealed that the inocula successfully colonised roots of the host plants. Plants inoculated with Acetobacter diazotrophicus (R12) had more root dry weight and volume than plants inoculated with Azospirillum brasilense (Sp7). Leaf protein and chlorophyll content were higher in the bacterised plants compared to Control 2 plants (inoculated with killed Sp7). These results suggest that the diazotrophs successfully improved the growth of the host plant (oil palm) and minimised the amount of N fertiliser necessary for growth.
  8. Zakaria L, Sahak S, Zakaria M, Salleh B
    Trop Life Sci Res, 2009 Dec;20(2):119-25.
    PMID: 24575184 MyJurnal
    A total of 13 Colletotrichum isolates were obtained from different banana cultivars (Musa spp.) with symptoms of anthracnose. Colletotrichum isolates from anthracnose of guava (Psidium guajava) and water apple (Syzygium aqueum) were also included in this study. Based on cultural and morphological characteristics, isolates from banana and guava were identified as Colletotrichum musae and from water apple as Colletotrichum gloeosporiodes. Isolates of C. musae from banana and guava had similar banding patterns in a randomly amplified polymorphic DNA (RAPD) analysis with four random primers, and they clustered together in a UPGMA analysis. C. gloeosporiodes from water apple was clustered in a separate cluster. Based on the present study, C. musae was frequently isolated from anthracnose of different banana cultivars and the RAPD banding patterns of C. musae isolates were highly similar but showed intraspecific variations.
  9. Pangsuban S, Bamroongrugsa N, Kanchanapoom K, Nualsri C
    Trop Life Sci Res, 2009 Dec;20(2):89-108.
    PMID: 24575182
    Various aspects of the reproductive success of Garcinia atroviridis Griff. were studied. Controlled pollination experiments were carried out in an orchard located in Songkhla province, southern Thailand, from February to July 2003. Floral longevity, stigma receptivity, and pollen viability were examined before carrying out the experiments. Three pollination treatments were compared: open pollination, manual pollination with bags, and bags without pollination (apogamy). Although there was no significant difference in the initial fruit set, bagged and manual pollination produced a significantly greater fruit drop rate than apogamy or natural pollination at one week after the flowers had been pollinated. On the other hand, the apogamy treatment had a greater fruit drop rate than natural and manual pollination treatments before fruit maturation. In addition, unpollinated bagged flowers bore fewer and smaller fruit than naturally and manually cross-pollinated flowers. Although the fruits from unpollinated flowers were capable of asexual seed formation, they produced fewer seeds and had poorer seed quality (defined as average fresh weight and germination rate) than those from the other treatments. The occurrence of asexual and sexual reproduction was also studied using Random Amplification of Polymorphic DNA (RAPD) analysis and by comparing the patterns of bands produced from DNA extracted from the offspring of the naturally cross-pollinated fruits. On average, 58% of the offspring had a genetic constitution identical to that of the maternal parent (ranging from 36% to 87%), indicating that some offspring were produced without prior fertilisation. However, the remainder showed polymorphism, demonstrating the occurrence of sexual reproduction. These findings indicate that facultative apomixis occurred in the study population. However, a residual sexuality was important for fruit production, fruit size, normal seed set and seed quality.
  10. Abdul Wahab Rahman, Hasber Salim, Mohd Shafiq Ghause
    Trop Life Sci Res, 2009;20(1):-.
    MyJurnal
    Sixty scavenging chickens from villages in Penang were examined for their state of nutrition or body condition and the presence of helminthic parasites. The majority of the chickens were of poor body condition. More than 66.7% (females) and 73.3% (males) belonged to the ‘below normal’ category of general body condition. A total of eight different helminth species were recovered from the trachea and the gastrointestinal tract of the various chickens. Four of the species were nematodes and the rest were cestodes. No trematodes were recovered from the chickens. The highest mean worm burden was recorded for the cestode Raillietina echinobothrida while the lowest was the nematode, Ascaridia galli.
  11. Wahi Abdul Rashid, Vun, Leong Wan, Mohd Harun Abdullah
    Trop Life Sci Res, 2009;20(1):-.
    MyJurnal
    Heavy metal accumulation and depuration may alter the effectiveness of Meretrix meretrix as a biomonitoring organism for water quality assessment. Therefore, this study was conducted to evaluate the effects of heavy metal accumulation and depuration on M. meretrix, by immersing it in Copper (Cu), Zinc (Zn), and Lead (Pb)
    solutions under laboratory conditions. The results showed that M. meretrix is able to accumulate Cu, Zn, and Pb at the rate of 0.99, 21.80, and 0.57 μg/g per day, respectively, and depurates at the rate of 0.42, 23.55, and 1.01 μg/g per day, respectively. These results indicate that M. meretrix could be effectively used as a biomonitoring organism for Cu because the accumulation rate is significantly (p ≤ 0.05) higher than the depuration rate. However, this was not the case for Zn because the accumulation rate was almost similar to the depuration rate, while for Pb, accumulation or depuration did not occur in M. meretrix.
  12. Subramaniam, Sreeramanan, Balasubramaniam, Vinod, Poobathy, Ranjetta, Sreenivasan, Sasidharan, Rathinam, Xavier
    Trop Life Sci Res, 2009;20(1):-.
    MyJurnal
    An early step in the Agrobacterium-mediated transformation of Phalaenopsis violacea orchid was investigated to elucidate the plant-bacterium interaction. Directed movement in response to chemical attractants is of crucial importance to Agrobacterium tumefaciens strains. Chemotaxis of A. tumefaciens strains (EHA 101 and 105) towards wounded orchid tissues has been studied by using swarm agar plates. The results obtained indicate a minor role for chemotaxis in determining host specificity and suggest that it could not be responsible for the absence of tumourigenesis in P. violacea orchid under natural conditions. The spectrometric GUS and green fluorescent protein (GFP) assays provided information on the amount of inoculated A. tumefaciens that effectively bound to various orchid tissues. It can be concluded that, at least during the two early steps of interaction, A. tumefaciens appears to be compatible with P. violacea, indicating a potential basis for genetic transformation.
  13. Grismer, Lee L., Wood, Perry Lee Jr., Grismer, Jesse Leland
    Trop Life Sci Res, 2009;20(1):-.
    MyJurnal
    A new species of small, insular, forest floor skink, Sphenomorphus perhentianensis sp. nov., is described from Pulau Perhentian Besar of the Perhentian Archipelago, Peninsular Malaysia. This species is differentiated from all other 36 Sundaland species of Sphenomorphus based on a unique collection of morphological and colour pattern characteristics. These unique characteristics include a snout-vent length of 30.0 mm, 29 midbody scale rows, smooth as opposed to striated dorsal scales, 65 paravertebrals, 61 ventrals, 4 supraoculars, parietals contacting the posterior-most supraocular, 1 medially projecting superciliary scale, 2 loreals, 6 supralabials and infralabials, 10 lamellae beneath the fourth toe, smooth subdigital lamellae, enlarged preanal scales, no body bands, a dark brown, diffuse, dorsolateral stripe extending to just past the axilla, a cream coloured dorsolateral stripe on the nape and anterior-most portion of the body, and no cream coloured postorbital stripe. The discovery of a second endemic reptile in the Perhentian Archipelago underscores the unrealized biodiversity of its herpetofauna. Additional works will describe two additional species from the Perhentian Archipelago.
  14. Chan, Kin Onn, Mohd. Shahfiz Azman, Nor Azlin, Pan, Khang Aun
    Trop Life Sci Res, 2009;20(1):-.
    MyJurnal
    A survey was carried out at the Pasoh Forest Reserve from 13–19 December, 2007 and 20–24 January, 2008, to inventory the herpetofauna contained therein. A total of 23 species of reptiles and amphibians were collected during this survey, five of which have not previously been recorded in the Pasoh Forest Reserve. An updated checklist which incorporates findings from previous studies is presented.
  15. Chan KO, Grismer LL, Wood, PL, Grismer JL, Ahmad N
    Trop Life Sci Res, 2009;20(1):-.
    MyJurnal
    A herpetological survey was conducted at Pulau Besar, Melaka from 10 to 12 June 2008, resulting in the discovery of five species of amphibians, nine species of lizards (including one new species of the gekkonid Cyrtodactylus) and one snake species. This report constitutes the first checklist of the herpetofauna of Pulau Besar and the Water Islands Archipelago.
  16. Siswanto, Rita Muhamad, Dzolkhifli Omar, Elna Karmawati
    Trop Life Sci Res, 2009;20(1):-.
    MyJurnal
    Helopeltis antonii is the major pest affecting cashew plants in Indonesia and causes potential damage to the plant. The development of the population was influenced by the fecundity and fertility of their eggs. The effect of mating on the eggs’ fecundity and the fertility of H. antonii was studied. Laboratory studies at Wonogiri Estate Service in Ngadirojo District, Wonogiri, Indonesia investigated the sexual maturity, the influence of female to male sex ratio on the females’ fecundity and longevity, and the influence of mating frequency to fecundity and the eggs hatchability of H. antonii. The study reveals that H. antonii females and males are ready to mate when they are two days old. The number of eggs laid and the longevity of the females’ lives were not significantly affected by the sex ratio; however, female to male sex ratios of 2:1 and 1:2 tended to produce a greater number of eggs. The fecundity of the female was not significantly influenced by the number of times the female mated. Unmated females laid fewer eggs than females paired with a mature male. The study shows that females need to mate to produce fertile eggs.
  17. Onn CK, Grismer LL, Matsui M, Nishikawa K, Wood PL, Grismer JL, et al.
    Trop Life Sci Res, 2010 Aug;21(1):71-82.
    PMID: 24575191 MyJurnal
    A survey was carried out at Gunung Panti Forest Reserve, Johor from 3-7 August 2006, 2-5 June 2008, and 28-31 July 2008 to inventory the herpetofauna therein. An updated checklist for the area which incorporates findings from previous studies is provided. In total, 37 species of frogs, 1 turtle, 27 lizards, and 11 snakes have been recorded from Gunung Panti Forest Reserve, Johor.
  18. Latiffah Z, Mah Kok F, Heng Mei H, Maziah Z, Baharuddin S
    Trop Life Sci Res, 2010 Aug;21(1):21-9.
    PMID: 24575187 MyJurnal
    A total of 33 isolates of Fusarium sp. were isolated from soil samples collected from a mangrove forest in an area in Kampung Pantai Acheh, Balik Pulau, Pulau Pinang, Malaysia. The isolates were isolated using soil dilution, direct isolation and debris isolation techniques. The debris isolation technique yielded the most isolates, with a total of 22 Fusarium isolates. Based on identification using morphological characteristics, three Fusarium species were identified: F. solani, F. oxysporum and F. verticillioides. F. solani (91%) was the most common species recovered from the mangrove soil samples, followed by F. oxysporum (6%) and F. verticillioides (3%).
  19. Ramli S, Ismail N, Alkarkhi AF, Easa AM
    Trop Life Sci Res, 2010 Aug;21(1):91-100.
    PMID: 24575193 MyJurnal
    Banana peel flour (BPF) prepared from green or ripe Cavendish and Dream banana fruits were assessed for their total starch (TS), digestible starch (DS), resistant starch (RS), total dietary fibre (TDF), soluble dietary fibre (SDF) and insoluble dietary fibre (IDF). Principal component analysis (PCA) identified that only 1 component was responsible for 93.74% of the total variance in the starch and dietary fibre components that differentiated ripe and green banana flours. Cluster analysis (CA) applied to similar data obtained two statistically significant clusters (green and ripe bananas) to indicate difference in behaviours according to the stages of ripeness based on starch and dietary fibre components. We concluded that the starch and dietary fibre components could be used to discriminate between flours prepared from peels obtained from fruits of different ripeness. The results were also suggestive of the potential of green and ripe BPF as functional ingredients in food.
  20. Al-Khaliel AS
    Trop Life Sci Res, 2010 Aug;21(1):55-70.
    PMID: 24575190
    Mycorrhiza, a mutualistic association between fungi and higher plants, has been documented extensively, but much less is known about the development of arbuscular mycorrhizal (AM) fungi and their effects on the growth of peanuts (Arachis hypogea L.). Therefore, the mycorrhizal status of Glomus spp. was investigated in the following diverse substrate soil conditions: non-autoclaved soil, autoclaved soil and autoclaved soil plus soil microbiota. The results indicated that both the arbuscular mycorrhizae, Glomus mosseae (Nicol. & Gerd.) Gerd. & Trappe, and Glomus fasciculatum (Thaxter) Gerd. & Trappe emend. Walker & Koske were infective to peanut, but displayed a differential impact on peanut growth depending on the microbial biomass content of the substrate soils. G. mosseae proved to be the most effective at improving peanut growth.
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