Displaying publications 1 - 20 of 45 in total

Abstract:
Sort:
  1. Mohammad Haniff MA, Muhammad Hafiz S, Wahid KA, Endut Z, Wah Lee H, Bien DC, et al.
    Sci Rep, 2015;5:14751.
    PMID: 26423893 DOI: 10.1038/srep14751
    In this work, the piezoresistive effects of defective graphene used on a flexible pressure sensor are demonstrated. The graphene used was deposited at substrate temperatures of 750, 850 and 1000 °C using the hot-filament thermal chemical vapor deposition method in which the resultant graphene had different defect densities. Incorporation of the graphene as the sensing materials in sensor device showed that a linear variation in the resistance change with the applied gas pressure was obtained in the range of 0 to 50 kPa. The deposition temperature of the graphene deposited on copper foil using this technique was shown to be capable of tuning the sensitivity of the flexible graphene-based pressure sensor. We found that the sensor performance is strongly dominated by the defect density in the graphene, where graphene with the highest defect density deposited at 750 °C exhibited an almost four-fold sensitivity as compared to that deposited at 1000 °C. This effect is believed to have been contributed by the scattering of charge carriers in the graphene networks through various forms such as from the defects in the graphene lattice itself, tunneling between graphene islands, and tunneling between defect-like structures.
    Matched MeSH terms: Biochemical Phenomena
  2. Ibrahim RW, Ahmad MZ, Al-Janaby HF
    Saudi J Biol Sci, 2016 Jan;23(1):S45-9.
    PMID: 26858564 DOI: 10.1016/j.sjbs.2015.09.012
    A mutation is ultimately essential for adaptive evolution in all populations. It arises all the time, but is mostly fixed by enzymes. Further, most do consider that the evolution mechanism is by a natural assortment of variations in organisms in line for random variations in their DNA, and the suggestions for this are overwhelming. The altering of the construction of a gene, causing a different form that may be communicated to succeeding generations, produced by the modification of single base units in DNA, or the deletion, insertion, or rearrangement of larger units of chromosomes or genes. This altering is called a mutation. In this paper, a mathematical model is introduced to this reality. The model describes the time and space for the evolution. The tool is based on a complex domain for the space. We show that the evolution is distributed with the hypergeometric function. The Boundedness of the evolution is imposed by utilizing the Koebe function.
    Matched MeSH terms: Biochemical Phenomena
  3. Abdullah A, Deris S, Mohamad MS, Anwar S
    PLoS One, 2013;8(4):e61258.
    PMID: 23593445 DOI: 10.1371/journal.pone.0061258
    One of the key aspects of computational systems biology is the investigation on the dynamic biological processes within cells. Computational models are often required to elucidate the mechanisms and principles driving the processes because of the nonlinearity and complexity. The models usually incorporate a set of parameters that signify the physical properties of the actual biological systems. In most cases, these parameters are estimated by fitting the model outputs with the corresponding experimental data. However, this is a challenging task because the available experimental data are frequently noisy and incomplete. In this paper, a new hybrid optimization method is proposed to estimate these parameters from the noisy and incomplete experimental data. The proposed method, called Swarm-based Chemical Reaction Optimization, integrates the evolutionary searching strategy employed by the Chemical Reaction Optimization, into the neighbouring searching strategy of the Firefly Algorithm method. The effectiveness of the method was evaluated using a simulated nonlinear model and two biological models: synthetic transcriptional oscillators, and extracellular protease production models. The results showed that the accuracy and computational speed of the proposed method were better than the existing Differential Evolution, Firefly Algorithm and Chemical Reaction Optimization methods. The reliability of the estimated parameters was statistically validated, which suggests that the model outputs produced by these parameters were valid even when noisy and incomplete experimental data were used. Additionally, Akaike Information Criterion was employed to evaluate the model selection, which highlighted the capability of the proposed method in choosing a plausible model based on the experimental data. In conclusion, this paper presents the effectiveness of the proposed method for parameter estimation and model selection problems using noisy and incomplete experimental data. This study is hoped to provide a new insight in developing more accurate and reliable biological models based on limited and low quality experimental data.
    Matched MeSH terms: Biochemical Phenomena*
  4. Edhuan Ismail, Mohd Shukri Sirat, Abd. Malek Abdul Hamid, Raihan Othman, Mohd Mohd Hanafi Ani, Asyadi Azam Mohd Abid
    Sains Malaysiana, 2017;46:1011-1016.
    Various production methods have been developed for graphene production, but each of them falls short in either the economic or quality aspect. In this paper, we present the flame deposition method, a modified chemical vapor deposition (CVD) that uses an open-flame. In this method, resulting carbon deposits were found to be graphitic in nature, thereby suggesting multilayer graphene growth in a very short reaction time of 5 min. Furthermore, the deposits were transferred onto a cyanoacrylate plastic substrate and its sheet resistance was measured to be 81 ohm/square. The results showed that open-flame deposition exhibits high potential for low-cost, low-energy and high-quality production of graphene.
    Matched MeSH terms: Biochemical Phenomena
  5. Solhan Yahya, Norinsan Kamil Othman, Abd Razak Daud, Azman Jalar
    Sains Malaysiana, 2014;43:1083-1087.
    The effect of scan rate on the accuracy of corrosion parameter in evaluating the efficiency of rice straw extract as corrosion inhibitor has been studied via potentiodynamic polarization measurement. Scan rate in the range of low (0.1- 0.25 mV s-1), medium (0.5-1.0 mV s-1) and high (1.5-2.0 mV s-1) scan were carried out on the carbon steel in 1 M HCl. The corrosion parameters such as corrosion rate, polarization resistance and corrosion current density have been analyzed through Tafel polarization curve. High scan rate gave poor accuracy of corrosion parameter compared to medium and low scan. Medium scan at 1.0 mV s-1 has been chosen as the optimum scan rate due to the approached steady-state and small disturbance of charged current. As a result, the addition of rice straw extract in 1 M HCl has reduced the values of corrosion current density in both cathodic and anodic reactions signified the corrosion has been inhibited. The efficiency of rice straw extracts as a corrosion inhibitor offer good result as much as 86%.
    Matched MeSH terms: Biochemical Phenomena
  6. Noor AF, Soo TCC, Ghani FM, Goh ZH, Khoo LT, Bhassu S
    Heliyon, 2017 Dec;3(12):e00446.
    PMID: 29322096 DOI: 10.1016/j.heliyon.2017.e00446
    Background: Dystrophin, an essential protein functional in the maintenance of muscle structural integrity is known to be responsible for muscle deterioration during white spot syndrome virus (WSSV) infection among prawn species. Previous studies have shown the upregulation of dystrophin protein in Macrobrachium rosenbergii (the giant freshwater prawn) upon white spot syndrome virus (WSSV) infection. The literature has also suggested the important role of calcium ion alterations in causing such muscle diseases. Thus, the interest of this study lies within the linkage between dystrophin functioning, intracellular calcium and white spot syndrome virus (WSSV) infection condition.

    Methods: In this study, the dystrophin gene from M. rosenbergii (MrDys) was first characterised followed by the characterization of dystrophin gene from a closely related shrimp species, Penaeus monodon (PmDys). Dystrophin sequences from different phyla were then used for evolutionary comparison through BLAST analysis, conserved domain analysis and phylogenetic analysis. The changes in mRNA expression levels of dystrophin and the alteration of intracellular calcium concentrations in WSSV infected muscle cells were then studied.

    Results: A 1246 base pair long dystrophin sequence was identified in the giant freshwater prawn, Macrobrachium rosenbergii (MrDys) followed by 1082 base pair long dystrophin sequence in P. monodon (PmDys). Four conserved domains were identified from the thirteen dystrophin sequences compared which were classified into 5 different phyla. From the phylogenetic analysis, aside from PmDys, the characterised MrDys was shown to be most similar to the invertebrate phylum of Nematoda. In addition, an initial down-regulation of dystrophin gene expression followed by eventual up-regulation, together with an increase in intracellular calcium concentration [Ca2+]
    i
    were shown upon WSSV experimental infection.

    Discussion: Both the functionality of the dystrophin protein and the intracellular calcium concentration were affected by WSSV infection which resulted in progressive muscle degeneration. An increased understanding of the role of dystrophin-calcium in MrDys and the interactions between these two components is necessary to prevent or reduce occurrences of muscle degeneration caused by WSSV infection, thereby reducing economic losses in the prawn farming industry from such disease.

    Matched MeSH terms: Biochemical Phenomena
  7. Kumarasingha R, Preston S, Yeo TC, Lim DS, Tu CL, Palombo EA, et al.
    Parasit Vectors, 2016;9(1):187.
    PMID: 27036205 DOI: 10.1186/s13071-016-1458-9
    Parasitic roundworms (nematodes) cause substantial morbidity and mortality in livestock animals globally, and considerable productivity losses to farmers. The control of these nematodes has relied largely on the use of a limited number of anthelmintics. However, resistance to many of these these anthelmintics is now widespread, and, therefore, there is a need to find new drugs to ensure sustained and effective treatment and control into the future.
    Matched MeSH terms: Biochemical Phenomena
  8. Liu YC, Chan KG, Chang CY
    Front Microbiol, 2015;6:1226.
    PMID: 26617576 DOI: 10.3389/fmicb.2015.01226
    Bacterial cells sense their population density and respond accordingly by producing various signal molecules to the surrounding environments thereby trigger a plethora of gene expression. This regulatory pathway is termed quorum sensing (QS). Plenty of bacterial virulence factors are controlled by QS or QS-mediated regulatory systems and QS signal molecules (QSSMs) play crucial roles in bacterial signaling transduction. Moreover, bacterial QSSMs were shown to interfere with host cell signaling and modulate host immune responses. QSSMs not only regulate the expression of bacterial virulence factors but themselves act in the modulation of host biology that can be potential therapeutic targets.
    Matched MeSH terms: Biochemical Phenomena
  9. Mohamed Ikhtifar Rafi, Cheah, Yoke Kqueen
    MyJurnal
    Bacterial endophytes are found on all types of plants and is a potential source of bioactive compounds which can be utilized to fight against multi-resistant pathogens and could be further develop into new leads for antibiotic development. However, the research done on the bacterial endophytes is relatively new and has potential to grow as it is theorized that each plant has one or more bacterial endophytes inhabiting them. This review aims to review the studies that have been done previously and give new insights on the latest trends in this field of research.
    Matched MeSH terms: Biochemical Phenomena
  10. Arif MA, Mohamad MS, Abd Latif MS, Deris S, Remli MA, Mohd Daud K, et al.
    Comput Biol Med, 2018 11 01;102:112-119.
    PMID: 30267898 DOI: 10.1016/j.compbiomed.2018.09.015
    Metabolic engineering involves the modification and alteration of metabolic pathways to improve the production of desired substance. The modification can be made using in silico gene knockout simulation that is able to predict and analyse the disrupted genes which may enhance the metabolites production. Global optimization algorithms have been widely used for identifying gene knockout strategies. However, their productions were less than theoretical maximum and the algorithms are easily trapped into local optima. These algorithms also require a very large computation time to obtain acceptable results. This is due to the complexity of the metabolic models which are high dimensional and contain thousands of reactions. In this paper, a hybrid algorithm of Cuckoo Search and Minimization of Metabolic Adjustment is proposed to overcome the aforementioned problems. The hybrid algorithm searches for the near-optimal set of gene knockouts that leads to the overproduction of metabolites. Computational experiments on two sets of genome-scale metabolic models demonstrate that the proposed algorithm is better than the previous works in terms of growth rate, Biomass Product Couple Yield, and computation time.
    Matched MeSH terms: Biochemical Phenomena
  11. Ng SF, Rouse J, Sanderson D, Eccleston G
    Pharmaceutics, 2010 May 18;2(2):209-223.
    PMID: 27721352
    Synthetic membranes used in Franz diffusion cells for topical formulation quality assessment should provide least resistance to drug diffusion. In this study, the diffusion rates of ibuprofen across thirteen membranes were determined using Franz diffusion cells. Correlation of the membrane thickness, pore size and MWCO with drug fluxes was also made. The drug diffusion results showed that the porous membranes were categorized into high-flux (8-18 mg/cm²/h) and low-flux (0.1-3 mg/cm²/h) membranes. The drug fluxes did not show strong correlations (r² < 0.99) with membrane parameters. Synthetic membranes can give variable drug fluxes, thus investigators should be careful in choosing membrane for formulation quality assessment.
    Matched MeSH terms: Biochemical Phenomena
  12. Jamar NH, Kritsiligkou P, Grant CM
    Sci Rep, 2018 03 01;8(1):3894.
    PMID: 29497115 DOI: 10.1038/s41598-018-22183-2
    Eukaryotic cells contain translation-associated mRNA surveillance pathways which prevent the production of potentially toxic proteins from aberrant mRNA translation events. We found that loss of mRNA surveillance pathways in mutants deficient in nonsense-mediated decay (NMD), no-go decay (NGD) and nonstop decay (NSD) results in increased protein aggregation. We have isolated and identified the proteins that aggregate and our bioinformatic analyses indicates that increased aggregation of aggregation-prone proteins is a general occurrence in mRNA surveillance mutants, rather than being attributable to specific pathways. The proteins that aggregate in mRNA surveillance mutants tend to be more highly expressed, more abundant and more stable proteins compared with the wider proteome. There is also a strong correlation with the proteins that aggregate in response to nascent protein misfolding and an enrichment for proteins that are substrates of ribosome-associated Hsp70 chaperones, consistent with susceptibility for aggregation primarily occurring during translation/folding. We also identified a significant overlap between the aggregated proteins in mRNA surveillance mutants and ageing yeast cells suggesting that translation-dependent protein aggregation may be a feature of the loss of proteostasis that occurs in aged cell populations.
    Matched MeSH terms: Biochemical Phenomena
  13. Hashim Y
    J Nanosci Nanotechnol, 2018 Feb 01;18(2):1199-1201.
    PMID: 29448557 DOI: 10.1166/jnn.2018.13956
    This study explores optimization of resistance load (R-Load) of four silicon nanowire transistor (SiNWT)-based static random-access memory (SRAM) cell. Noise margins and inflection voltage of butterfly characteristics with static power consumption of SRAM cell are used as limiting factors in this optimization. Range of R-Load used in this study was 20-1000 KΩ with Vdd = 1 V. Results indicate that optimization depends critically on resistance load value. The optimized range of R-Load is 100-200 KΩ.
    Matched MeSH terms: Biochemical Phenomena
  14. Zulkifly K, Cheng-Yong H, Yun-Ming L, Bayuaji R, Abdullah MMAB, Ahmad SB, et al.
    Materials (Basel), 2021 Apr 15;14(8).
    PMID: 33920865 DOI: 10.3390/ma14081973
    Thermal performance, combustibility, and fire propagation of fly ash-metakaolin (FA-MK) blended geopolymer with the addition of aluminum triphosphate, ATP (Al(H2PO4)3), and monoaluminium phosphate, MAP (AlPO4) were evaluated in this paper. To prepare the geopolymer mix, fly ash and metakaolin with a ratio of 1:1 were added with ATP and MAP in a range of 0-3% by weight. The fire/heat resistance was evaluated by comparing the residual compressive strengths after the elevated temperature exposure. Besides, combustibility and fire propagation tests were conducted to examine the thermal performance and the applicability of the geopolymers as passive fire protection. Experimental results revealed that the blended geopolymers with 1 wt.% of ATP and MAP exhibited higher compressive strength and denser geopolymer matrix than control geopolymers. The effect of ATP and MAP addition was more obvious in unheated geopolymer and little improvement was observed for geopolymer subjected to elevated temperature. ATP and MAP at 3 wt.% did not help in enhancing the elevated-temperature performance of blended geopolymers. Even so, all blended geopolymers, regardless of the addition of ATP and MAP, were regarded as the noncombustible materials with negligible (0-0.1) fire propagation index.
    Matched MeSH terms: Biochemical Phenomena
  15. Roslan, M.H., Azis, N., Jasni, J., Ibrahim, Z.
    MyJurnal
    Top-Oil Temperature (TOT) is one of the basic components to estimate the Hot-Spot temperature (HST) of the transformers. This paper presents an alternative TOT model based on the heat transfer theory that utilises Nonlinear Thermal Resistance (NTR) and Lumped Capacitance (LC) approaches. It is applied in a thermal-electrical analogy and the heat transfer equivalent equation is determined. This model is tested on a measured TOT of 250 MVA ONAF and 400 MVA ONAF transformers obtained from IEC 60076-7 and previous research. A comparison of TOT is carried out with the existing models IEC 60076-7 exponential and IEEE Loading Guide clause 7 methods. It is found that the thermal model based on the NTR and LC approach could determine the measured TOT closer than the existing methods available in the standards.
    Matched MeSH terms: Biochemical Phenomena
  16. Hussin AS, Farouk AE, Greiner R, Salleh HM, Ismail AF
    World J Microbiol Biotechnol, 2007 Dec;23(12):1653-60.
    PMID: 27517819 DOI: 10.1007/s11274-007-9412-9
    Over two hundred bacteria were isolated from the halosphere, rhizosphere and endophyte of Malaysian maize plantation and screened for phytases activity. Thirty isolates with high detectable phytase activity were chosen for media optimization study and species identification. Ten types of bacterial phytase producers have been discovered in this study, which provides opportunity for characterization of new phytase(s) and various commercial and environmental applications. The majority of the bacterial isolates with high detectable phytase activity were of endophyte origin and 1.6% of the total isolates showed phytase activity of more than 1 U/ml. Most of the strains produced extra-cellular phytase and Staphylococcus lentus ASUIA 279 showed the highest phytase activity of 1.913 U/ml. All 30 species used in media optimization study exhibit favorable enzyme production when 1% rice bran was included in the growth media.
    Matched MeSH terms: Biochemical Phenomena
  17. Lee HS, Singh JK, Ismail MA
    Sci Rep, 2017 02 03;7:41935.
    PMID: 28157233 DOI: 10.1038/srep41935
    A new technique was accepted to fill the porosity of Al coating applied by arc thermal spray process to enhance corrosion resistance performance in artificial ocean water. The porosity is the inherent property of arc thermal spray coating process. In this study, applied coating was treated with different concentrations of ammonium phosphate mono basic (NH4H2PO4: AP) solution thereafter dried at room temperature and kept in humidity chamber for 7d to deposit uniform film. The corrosion resistance of Al coating and treated samples have been evaluated using electrochemical impedance spectroscopy (EIS) and potentiodynamic techniques with exposure periods in artificial ocean water. Electrochemical techniques, X-ray diffraction (XRD), Raman spectroscopy, atomic force microscopy (AFM) and field emission-scanning electron microscopy (FE-SEM) indicated that phosphate ion would have been retarding corrosion of Al coating effectively. The formation of AHP (Ammonium Aluminum Hydrogen Phosphate Hydrate: NH4)3Al5H6(PO4)8.18H2O) on Al coating surface after treatment with AP is nano sized, crystalline and uniformly deposited but after exposure them in artificial ocean water, they form AHPH (Aluminum hydroxide phosphate hydrate Al3(PO4)2(OH)3(H2O)5) that is very protective, adherent, uniform and plate like morphology of corrosion products. The AHPH is sparingly soluble and adherent to surface and imparted improved corrosion resistance.
    Matched MeSH terms: Biochemical Phenomena
  18. Lim HP, Liew WYH, Melvin GJH, Jiang ZT
    Materials (Basel), 2021 Mar 29;14(7).
    PMID: 33805462 DOI: 10.3390/ma14071677
    This paper reviews the phase structures and oxidation kinetics of complex Ti-Al alloys at oxidation temperatures in the range of 600-1000 °C. The mass gain and parabolic rate constants of the alloys under isothermal exposure at 100 h (or equivalent to cyclic exposure for 300 cycles) is compared. Of the alloying elements investigated, Si appeared to be the most effective in improving the oxidation resistance of Ti-Al alloys at high temperatures. The effect of alloying elements on the mechanical properties of Ti-Al alloys is also discussed. Significant improvement of the mechanical properties of Ti-Al alloys by element additions has been observed through the formation of new phases, grain refinement, and solid solution strengthening.
    Matched MeSH terms: Biochemical Phenomena
  19. Guan Ling Sim, Mohd Nizar Hamidon, Kamilu Iman Usman
    MyJurnal
    This study presents the sensitivity of graphene nanoribbon (GNR) when exposed to ammonia gas at room temperature. Alumina were used as a substrate and coated with GNR as sensing film for ammonia gas detection. Four different concentration of GNR in the category of maximum, high, low, and minimum were prepared. Each category of GNR will be dispersed on alumina substrate with area of 1cm2 and 4cm2. 30nm of gold contacts are sputtered on both ends of the sensing film. The ammonia gas can be detected by measuring the changes in resistance. The GNR as ammonia sensor shows good responses at room temperature. In repeatability test, maximum GNR shows least variation when exposed to ammonia with the value of 1.01% (4cm2) and 2.12% (1cm2). In a sensitivity test, 0.25% to 1.00% of ammonia gas was used and tested on maximum GNR. Maximum GNR on 4cm2 substrate shows higher sensitivity as compared to 1cm2. Reaction time of GNR on ammonia gas decreased as the concentration of ammonia increased. Larger surface area of sensing element required lesser reaction time.
    Matched MeSH terms: Biochemical Phenomena
  20. Norzaida Yusof, Noranizan Mohd Adzahan, Kharidah Muhammad
    MyJurnal
    This study was conducted to optimize the production of spray-dried white dragon fruit (Hylocereus undatus) powder using resistant maltodextrin as wall material. The inlet air temperature (140 °C, 150 °C and 160 °C), outlet temperature (75 °C, 80 °C and 85 °C) and resistant maltodextrin concentrations (20%, 25% and 30%) were tested as independent variables. Process yield, moisture content, water activity, solubility, hygroscopicity and bulk density of the powders were analysed as responses. Process yield significantly (p
    Matched MeSH terms: Biochemical Phenomena
Related Terms
Filters
Contact Us

Please provide feedback to Administrator (afdal@afpm.org.my)

External Links