Displaying publications 1 - 20 of 216 in total

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  1. Deep biogeographic barriers explain divergent global vertebrate communities
    Williams PJ, Zipkin EF, Brodie JF
    Nat Commun, 2024 Mar 28;15(1):2457.
    PMID: 38548741 DOI: 10.1038/s41467-024-46757-z
    Biogeographic history can lead to variation in biodiversity across regions, but it remains unclear how the degree of biogeographic isolation among communities may lead to differences in biodiversity. Biogeographic analyses generally treat regions as discrete units, but species assemblages differ in how much biogeographic history they share, just as species differ in how much evolutionary history they share. Here, we use a continuous measure of biogeographic distance, phylobetadiversity, to analyze the influence of biogeographic isolation on the taxonomic and functional diversity of global mammal and bird assemblages. On average, biodiversity is better predicted by environment than by isolation, especially for birds. However, mammals in deeply isolated regions are strongly influenced by isolation; mammal assemblages in Australia and Madagascar, for example, are much less diverse than predicted by environment alone and contain unique combinations of functional traits compared to other regions. Neotropical bat assemblages are far more functionally diverse than Paleotropical assemblages, reflecting the different trajectories of bat communities that have developed in isolation over tens of millions of years. Our results elucidate how long-lasting biogeographic barriers can lead to divergent diversity patterns, against the backdrop of environmental determinism that predominantly structures diversity across most of the world.
    Matched MeSH terms: Birds
  2. Beyond tradition: a novel approach for edible bird nest cleaning and its processing
    Ramli ANM, Badrulzaman SZS, Patil RV, Azelee NIW, Manas NHA, Aminan AW
    Vet Res Commun, 2024 Feb;48(1):29-37.
    PMID: 37840088 DOI: 10.1007/s11259-023-10235-6
    An edible bird nest is a product of the solidified saliva secretion from a few different swiftlet's species, during the breeding season. But the high impurities in A. maximus and C. esculent nests make them less ideal to be consumed. Eggshells and guano are the major contaminants contributing to the nitrite and nitrates contents. However, recent studies have shown significant medicinal and cosmetic applications of edible bird nest like anti-viral, anti-inflammatory, enhancing bone strength, and anti-aging. Thus, the high demand for edible bird nest in the global market to explore its potential application has improved from swiftlet farming activities to the cleaning process. Recent studies have shown the use of immobilized enzymes like keratinase for the removal of contaminants. The current review discusses the importance of Swiftlet bird nest, its application, and commercialization.
    Matched MeSH terms: Birds*
  3. Origin tracing and adulteration identification of bird's nest by high- and low-field NMR combined with pattern recognition
    Xing M, Liu F, Lin J, Xu D, Zhong J, Xia F, et al.
    Food Res Int, 2024 Jan;175:113780.
    PMID: 38129006 DOI: 10.1016/j.foodres.2023.113780
    Edible bird's nest (EBN) is a high-value health food with various nutrients and bioactive components. With increasing demand for EBN, they are often adulterated with cheaper ingredients or falsely labeled by the origin information, thus harming consumer interests. In this study, high- and low-field nuclear magnetic resonance (HF/LF-NMR) technology combined with multivariate statistical analysis was used to identify the geographical marker of EBN from different origins and authenticate the adulterated EBN with various adulterants at different adulteration rates. Authentic EBN samples from Malaysia were used to simulate adulteration using gelatin (GL), agar (AG) and starch (ST) at 10 %, 20 %, 40 %, 60 %, 80 %, and 100 % w/w, respectively. The results showed significant differences in composition among EBN from different origins, with isocaproate and citric acid serving as geographical markers for Malaysia and Vietnam, respectively. Leucine, glutamic acid, and N-acetylglycoprotein serving as geographical markers for Indonesia. In addition, PLS model further verified the accuracy of origin identification of EBN. The LF-NMR results of adulteration EBN showed a linear correlation between the transverse relaxation (T2, S2) and the adulterated ratio. The OPLS-DA based on T2 spectra could accurately identify authentic EBN from adulterated with GL, AG and ST at 40 %, 20 %, and 20 %, respectively. Fisher discrimination model was able to differentiate at 20 %, 20 %, and 40 %, respectively. These results show that the 1H NMR combined with multivariate statistical analysis method could be a potential tool for the detection of origin and adulteration of EBN.
    Matched MeSH terms: Birds*
  4. Two new records of chewing lice (Phthiraptera: Amblycera) from the Oriental honey buzzard [Pernis ptilorhynchus (Temminck, 1821)] and house crow (Corvus splendens Viellot, 1817) in Malaysia
    Kazim AR, Houssaini J, Tappe D, Heo CC, Vellayan S
    Trop Biomed, 2023 Dec 01;40(4):416-421.
    PMID: 38308828 DOI: 10.47665/tb.40.4.006
    We report two new records of chewing lice from avian pets in Peninsular Malaysia: Colpocephalum apivorus Tendeiro, 1958 from an Oriental honey buzzard (Pernis ptilorhynchus (Temminck, 1821)), and Myrsidea splendenticola Klockenhoff, 1973 from an albino house crow (Corvus splendens Vieillot, 1817). The scarcity of louse records from avian pets and wild birds, and the lack of louse research in Malaysia are discussed.
    Matched MeSH terms: Birds
  5. Molecular characterization and phylogenetic analysis of avian influenza H3N8 virus isolated from imported waterfowl in Malaysia
    Leow BL, Shohaimi SA, Mohd Yusop FF, Sidik MR, Mohd Saeid FH
    Trop Biomed, 2023 Jun 01;40(2):220-235.
    PMID: 37650410 DOI: 10.47665/tb.40.2.014
    Wild aquatic birds are natural reservoirs of influenza A viruses and H3 subtype is one of the most prevalent subtypes in waterfowl. Two H3N8 viruses of low pathogenic avian influenza (LPAI) were isolated via egg inoculation technique from the fecal swab specimens from imported barnacle goose and paradise shelduck in Veterinary Research Institute Ipoh, Malaysia. The full length of eight gene segments of the two viruses were amplified and sequenced with specific primers. The sequences were molecularly characterized, and the sequence identity were assessed with other published sequences. The two viruses are identical and they possess the same amino acid sequences for all the eight gene segments. The viruses were highly similar to the H3 virus from Netherlands and N8 virus from Belgium respectively. Phylogenetic analysis revealed that all the eight gene segments were grouped in the Eurasian lineage, and genetic reassortment may occur between the internal genes of the H3 viruses and other AI subtypes. Though four amino acid substitutions were identified in the hemagglutinin gene, the viruses retained most of the avian-type receptor binding preference. Few amino acid substitutions were observed in all internal genes. Most of the neuraminidase inhibitors and adamantine resistance related mutation were not seen in the viruses. The replicative capacity, cross species transmissibility, and potential zoonotic risk of the viruses are worth further investigation. As H3 virus poses potential threats to both human and animals, and with the increase in the international trade of birds; strict quarantine practice at the entry point and good laboratory diagnostic capabilities is crucial to prevent the introduction of new AI virus into our country.
    Matched MeSH terms: Birds
  6. Fulltext Circulation of West Nile virus in mosquitoes approximate to the migratory bird stopover in West Coast Malaysia
    Natasha JA, Yasmin AR, Sharma RSK, Nur-Fazila SH, Nur-Mahiza MI, Arshad SS, et al.
    PLoS Negl Trop Dis, 2023 Apr;17(4):e0011255.
    PMID: 37023172 DOI: 10.1371/journal.pntd.0011255
    Being a tropical country with a conducive environment for mosquitoes, mosquito-borne illnesses such as dengue, chikungunya, lymphatic filariasis, malaria, and Japanese encephalitis are prevalent in Malaysia. Recent studies reported asymptomatic infection of West Nile virus (WNV) in animals and humans, but none of the studies included mosquitoes, except for one report made half a century ago. Considering the scarcity of information, our study sampled mosquitoes near migratory bird stopover wetland areas of West Coast Malaysia located in the Kuala Gula Bird Sanctuary and Kapar Energy Venture, during the southward migration period in October 2017 and September 2018. Our previous publication reported that migratory birds were positive for WNV antibody and RNA. Using a nested RT-PCR analysis, WNV RNA was detected in 35 (12.8%) out of 285 mosquito pools consisting of 2,635 mosquitoes, most of which were Culex spp. (species). Sanger sequencing and phylogenetic analysis revealed that the sequences grouped within lineage 2 and shared 90.12%-97.01% similarity with sequences found locally as well as those from Africa, Germany, Romania, Italy, and Israel. Evidence of WNV in the mosquitoes substantiates the need for continued surveillance of WNV in Malaysia.
    Matched MeSH terms: Birds
  7. Biomonitoring of heavy metals in the feathers of House crow (Corvus splendens) from some metropolitans of Asia and Africa
    Iqbal F, Wilson R, Ayub Q, Song BK, Krzeminska-Ahmedzai U, Talei A, et al.
    Environ Sci Pollut Res Int, 2023 Mar;30(13):35715-35726.
    PMID: 36536201 DOI: 10.1007/s11356-022-24712-z
    Urban-dwelling birds can be useful biomonitors to assess the impact of the urbanisation on both public and wildlife health. Widely distributed urban bird species, the House crow, was studied for heavy metal accumulation levels from nine cities of South Asia, Southeast Asia and Africa that border the Indian Ocean. Feathers were spectroscopically investigated for the deposition of ten heavy metals, i.e. As, Zn, Pb, Cd, Ni, iron Fe, Mn, Cr, Cu and Li. Fe and Zn were found to be the most prevalent metals in all sites. Measured concentrations of Pb (4.38-14.77 mg kg-1) overall, and Fe (935.66 mg kg-1) and Cu (67.17 mg kg-1) at some studied sites were above the toxicity levels reported lethal in avian toxicological studies. Multivariate analysis and linear models supported geographical location as a significant predictor for the level of most of the metals. Zn and Cu, generally and Pb, Cd, Mn, Cr at some sites exhibited potential bioaccumulation from surrounding environments. Inter-species comparisons strengthen the inference that the House crow is a reliable bioindicator species for the qualitative assessment of local urban environmental pollution and could be a useful tool for inter-regional monitoring programs.
    Matched MeSH terms: Birds
  8. Fulltext Optimal feature selection using novel flamingo search algorithm for classification of COVID-19 patients from clinical text
    Mahdi AY, Yuhaniz SS
    Math Biosci Eng, 2023 Jan 11;20(3):5268-5297.
    PMID: 36896545 DOI: 10.3934/mbe.2023244
    Though several AI-based models have been established for COVID-19 diagnosis, the machine-based diagnostic gap is still ongoing, making further efforts to combat this epidemic imperative. So, we tried to create a new feature selection (FS) method because of the persistent need for a reliable system to choose features and to develop a model to predict the COVID-19 virus from clinical texts. This study employs a newly developed methodology inspired by the flamingo's behavior to find a near-ideal feature subset for accurate diagnosis of COVID-19 patients. The best features are selected using a two-stage. In the first stage, we implemented a term weighting technique, which that is RTF-C-IEF, to quantify the significance of the features extracted. The second stage involves using a newly developed feature selection approach called the improved binary flamingo search algorithm (IBFSA), which chooses the most important and relevant features for COVID-19 patients. The proposed multi-strategy improvement process is at the heart of this study to improve the search algorithm. The primary objective is to broaden the algorithm's capabilities by increasing diversity and support exploring the algorithm search space. Additionally, a binary mechanism was used to improve the performance of traditional FSA to make it appropriate for binary FS issues. Two datasets, totaling 3053 and 1446 cases, were used to evaluate the suggested model based on the Support Vector Machine (SVM) and other classifiers. The results showed that IBFSA has the best performance compared to numerous previous swarm algorithms. It was noted, that the number of feature subsets that were chosen was also drastically reduced by 88% and obtained the best global optimal features.
    Matched MeSH terms: Birds
  9. Review of sialic acid's biochemistry, sources, extraction and functions with special reference to edible bird's nest
    Ling AJW, Chang LS, Babji AS, Latip J, Koketsu M, Lim SJ
    Food Chem, 2022 Jan 15;367:130755.
    PMID: 34390910 DOI: 10.1016/j.foodchem.2021.130755
    Sialic acids are a group of nine-carbon α-keto acids. Sialic acid exists in more than 50 forms, with the natural types discovered as N-acetylneuraminic acid (Neu5Ac), deaminoneuraminic acid (2-keto-3-deoxy-nonulononic acid or Kdn), and N-glycolylneuraminic acid (Neu5Gc). Sialic acid level varies depending on the source, where edible bird's nest (EBN), predominantly Neu5Ac, is among the major sources of sialic acid. Due to its high nutritive value and complexity, sialic acid has been studied extensively through acid, aqueous, and enzymatic extraction. Although detection by chromatographic methods or mass spectrometry is common, the isolation and recovery work remained limited. Sialic acid is well-recognised for its bioactivities, including brain and cognition development, immune-enhancing, anti-hypertensive, anticancer, and skin whitening properties. Therefore, sialic acid can be used as a functional ingredient in the various industries. This paper reviews the current trend in the biochemistry, sources, extraction, and functions of sialic acids with special reference to EBN.
    Matched MeSH terms: Birds
  10. Fulltext Riverine forest as a significant habitat to harbor a wide range of bird species
    Rajpar MN, Rajpar AH, Zakaria M
    Braz J Biol, 2022;84:e256160.
    PMID: 35137773 DOI: 10.1590/1519-6984.256160
    Riverine forests are unique and highly significant ecosystems that are globally important for diverse and threatened avian species. Apart from being a cradle of life, it also serves as a gene pool that harbors a variety of flora and fauna species (repeated below). Despite the fact, this fragile ecosystem harbored avian assemblages; it is now disappearing daily as a result of human activity. Determining habitat productivity using bird species is critical for conservation and better management in the future. Multiple surveys were conducted over a 15-month period, from January to March 2019, using the distance sampling point count method. A total of 250 point count stations were fixed systematically at 300 m intervals. In total, 9929 bird individuals were recorded, representing 57 species and 34 families. Out of 57 bird species, two were vulnerable, one was data deficient, one was nearly threatened, and the remaining 53 species were of least concern. The Eurasian Collard Dove - Streptopelia decaocto (14.641 ± 2.532/ha), White-eared Bulbul - Pycnonotus leucotis (13.398 ± 4.342/ha) and Common Babbler - Turdoides caudata (10.244 ± 2.345/ha) were the three first plenteous species having higher densities. However, the densities of three species, i.e., Lesser Whitethroat - Sylvia curruca, Gray Heron - Ardea cinerea and Pallas Fish Eagle - Haliaeetus leucoryphus, were not analyzed due to the small sample size. The findings of diversity indices revealed that riverine forest has harbored the diverse avian species that are uniformly dispersed across the forest. Moreover, recording the ten foraging guilds indicated that riverine forest is rich in food resources. In addition, the floristic structure importance value index results indicated that riverine forest is diverse and rich in flora, i.e. trees, shrubs, weeds and grass, making it an attractive and productive habitat for bird species.
    Matched MeSH terms: Birds
  11. Wallace's line, Wallacea, and associated divides and areas: history of a tortuous tangle of ideas and labels
    Ali JR, Heaney LR
    Biol Rev Camb Philos Soc, 2021 06;96(3):922-942.
    PMID: 33502095 DOI: 10.1111/brv.12683
    Due to its position between the highly distinct Oriental and Australasian biogeographical realms, much effort has been spent demarcating associated separations and transitions in the faunal assemblages of the Indo-Australian Archipelago. Initially, sharp boundary lines were proposed, with the earliest dating from the mid-1800s. Notably, the one published by Alfred R. Wallace in 1863, based upon land-mammal and land-bird distributions, has since achieved iconic status and today its significance is recognized well beyond the confines of the biogeography community. Over the next four decades many such divides were engraved onto plates and inked onto charts of SE Asia using additional information, different organisms or other criteria. However, it became apparent that, as Wallace had noted, all such lines were to some degree permeable, and by the 1880s transition zones were being put forward instead; the label 'Wallacea' was introduced in 1924. Interestingly, the last decade has seen new divides and sub-regions being proposed, some departing markedly from earlier offerings. Although currently there is general agreement regarding much of the terminology associated with both the lines and the areas, the record of publication indicates that this consensus has emerged obliquely, and in some cases is weakly founded. This review does not present new data nor new analyses; rather it summarizes the development of ideas and reflects upon attendant issues that have emerged. After reviewing the key proposals, recommendations are presented that should in future alleviate perceived difficulties or inadequacies. Reference to specific divides must be true to their original definitions; there are many instances where the secondary literature has portrayed them incorrectly and with some this has rippled through into later publications. Moreover, Wallace's 1863 line is not the one that he finally settled upon (in 1910); its path around Sulawesi was transferred from the west to the east of the Island. Ideally, Huxley's divide (1868) should carry his name rather than Wallace's; the latter never accepted the proposition. Lydekker's Line (1896) ought to be labelled the Heilprin-Lydekker Line in recognition of Angelo Heilprin's 1887 contribution. Concerning transition zones, ideally Wallacea should correspond to its original 1924 description, which incorporated the Philippine islands bar the Palawan group. Notably, though, a smaller form (introduced by Darlington in 1957, used frequently from 1998 onwards) in which all of the Philippine islands are excluded is entrenched within the recent literature, but this is often without evident justification. It should also be recognized that the 'reduced' (=southern) Wallacea area was effectively defined by Heilprin in 1887, but was then labelled the 'Austro-Malaysian Transition Zone'. Finally, the application in recent years of modern analytical techniques has not led to a consensus view on where the lines/areas should run/be placed; with such a large, diverse set of organisms, each with differing histories, this is perhaps not surprising.
    Matched MeSH terms: Birds*
  12. Edible Bird's Nest Attenuates Menopause-Related Bone Degeneration in Rats via Increaing Bone Estrogen-Receptor Expression
    Hou ZP, Tang SY, Ji HR, He PY, Li YH, Dong XL, et al.
    Chin J Integr Med, 2021 Apr;27(4):280-285.
    PMID: 31872369 DOI: 10.1007/s11655-019-3209-1
    OBJECTIVE: To investigate the mechanistic basis for the attenuation of bone degeneration by edible bird's nest (EBN) in ovariectomized rats.

    METHODS: Forty-two female Sprage-Dawley rats were randomized into 7 groups (6 in each group). The ovariectomized (OVX) and OVX + 6%, 3%, and 1.5% EBN and OVX +estrogen groups were given standard rat chow alone, standard rat chow +6%, 3%, and 1.5% EBN, or standard rat chow +estrogen therapy (0.2mg/kg per day), respectively. The sham-operation group was surgically opened without removing the ovaries. The control group did not have any surgical intervention. After 12 weeks of intervention, blood samples were taken for serum estrogen, osteocalcin, and osteoprotegerin, as well as the measurement of magnesium, calcium abd zinc concentrations. While femurs were removed from the surrounding muscles to measure bone mass density using the X-ray edge detection technique, then collected for histology and estrogen receptor (ER) immunohistochemistry.

    RESULTS: Ovariectomy altered serum estrogen levels resulting in increased food intake and weight gain, while estrogen and EBN supplementation attenuated these changes. Ovariectomy also reduced bone ER expression and density, and the production of osteopcalcin and osteorotegerin, which are important pro-osteoplastic hormones that promote bone mineraliztion and density. Conversely, estrogen and EBN increased serum estrogen levels leading to increased bone ER expression, pro-osteoplastic hormone production and bone density (all P<0.05).

    CONCLUSION: EBN could be used as a safe alternative to hormone replacement therapys for managing menopausal complications like bone degeneration.

    Matched MeSH terms: Birds
  13. Fulltext Towards complete and error-free genome assemblies of all vertebrate species
    Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, et al.
    Nature, 2021 Apr;592(7856):737-746.
    PMID: 33911273 DOI: 10.1038/s41586-021-03451-0
    High-quality and complete reference genome assemblies are fundamental for the application of genomics to biology, disease, and biodiversity conservation. However, such assemblies are available for only a few non-microbial species1-4. To address this issue, the international Genome 10K (G10K) consortium5,6 has worked over a five-year period to evaluate and develop cost-effective methods for assembling highly accurate and nearly complete reference genomes. Here we present lessons learned from generating assemblies for 16 species that represent six major vertebrate lineages. We confirm that long-read sequencing technologies are essential for maximizing genome quality, and that unresolved complex repeats and haplotype heterozygosity are major sources of assembly error when not handled correctly. Our assemblies correct substantial errors, add missing sequence in some of the best historical reference genomes, and reveal biological discoveries. These include the identification of many false gene duplications, increases in gene sizes, chromosome rearrangements that are specific to lineages, a repeated independent chromosome breakpoint in bat genomes, and a canonical GC-rich pattern in protein-coding genes and their regulatory regions. Adopting these lessons, we have embarked on the Vertebrate Genomes Project (VGP), an international effort to generate high-quality, complete reference genomes for all of the roughly 70,000 extant vertebrate species and to help to enable a new era of discovery across the life sciences.
    Matched MeSH terms: Birds
  14. Monitoring of heavy metal pollution in urban and rural environments across Pakistan using House crows (Corvus splendens) as bioindicator
    Iqbal F, Ayub Q, Wilson R, Song BK, Talei A, Yeong KY, et al.
    Environ Monit Assess, 2021 Mar 30;193(4):237.
    PMID: 33783594 DOI: 10.1007/s10661-021-08966-7
    A widely distributed urban bird, the house crow (Corvus splendens), was used to assess bioavailable heavy metals in urban and rural environments across Pakistan. Bioaccumulation of arsenic (As), zinc (Zn), lead (Pb), cadmium (Cd), nickel (Ni), iron (Fe), manganese (Mn), chromium (Cr), and copper (Cu) was investigated in wing feathers of 96 crows collected from eight locations and categorized into four groups pertaining to their geographical and environmental similarities. Results revealed that the concentrations of Pb, Ni, Mn, Cu, and Cr were positively correlated and varied significantly among the four groups. Zn, Fe, Cr, and Cu regarded as industrial outputs, were observed in birds both in industrialized cities and in adjoining rural agricultural areas irrigated through the Indus Basin Irrigation System. Birds in both urban regions accrued Pb more than the metal toxicity thresholds for birds. The house crow was ranked in the middle on the metal accumulation levels in feathers between highly accumulating raptor and piscivore and less contaminated insectivore and granivore species in the studied areas,. This study suggests that the house crow is an efficient bioindicator and supports the feasibility of using feathers to discriminate the local pollution differences among terrestrial environments having different levels and kinds of anthropogenic activities.
    Matched MeSH terms: Birds
  15. Fulltext Efficacy of Edible Bird's Nest on Cognitive Functions in Experimental Animal Models: A Systematic Review
    Ismail M, Alsalahi A, Aljaberi MA, Ibrahim RM, Bakar FA, Ideris A
    Nutrients, 2021 Mar 23;13(3).
    PMID: 33806762 DOI: 10.3390/nu13031028
    Edible bird's nest (EBN) is constructed from saliva of swiftlets birds and consumed largely by Southeast and East Asians for its nutritional value and anti-aging properties. Although the neuroprotection of EBN in animals has been reported, there has not been yet systemically summarized. Thus, this review systemically outlined the evidence of the neuroprotective activity of EBN in modulating the cognitive functions of either healthy or with induced-cognitive dysfunction animals as compared to placebos. The related records from 2010 to 2020 were retrieved from PubMed, Scopus, Web of Science and ScienceDirect using pre-specified keywords. The relevant records to the effect of EBN on cognition were selected according to the eligibility criteria and these studies underwent appraisal for the risk of bias. EBN improved the cognitive functions of induced-cognitive dysfunction and enhanced the cognitive performance of healthy animals as well as attenuated the neuroinflammations and neuro-oxidative stress in the hippocampus of these animals. Malaysian EBN could improve the cognitive functions of experimental animals as a treatment in induced cognitive dysfunction, a nutritional cognitive-enhancing agent in offspring and a prophylactic conservative effect on cognition against exposure to subsequent noxious cerebral accidents in a dose-depended manner through attenuating neuroinflammation and neuro-oxidative stress. This systemic review did not proceed meta-analysis.
    Matched MeSH terms: Birds*
  16. Fulltext Tropical land-use change alters trait-based community assembly rules for dung beetles and birds
    Edwards FA, Edwards DP, Hamer KC, Fayle TM
    Oecologia, 2021 Mar;195(3):705-717.
    PMID: 33559003 DOI: 10.1007/s00442-020-04829-z
    Tropical rainforest disturbance and conversion are critical drivers of biodiversity loss. A key knowledge gap is understanding the impacts of habitat modification on mechanisms of community assembly, which are predicted to respond differently between taxa and across spatial scales. We use a null model approach to detect trait assembly of species at local- and landscape-scales, and then subdivide communities with different habitat associations and foraging guilds to investigate whether the detection of assembly mechanisms varies between groups. We focus on two indicator taxa, dung beetles and birds, across a disturbance gradient of primary rainforest, selectively logged rainforest, and oil palm plantations in Borneo, Southeast Asia. Random community assembly was predominant for dung beetles across habitats, whereas trait convergence, indicative of environmental filtering, occurred across the disturbance gradient for birds. Assembly patterns at the two spatial scales were similar. Subdividing for habitat association and foraging guild revealed patterns hidden when focusing on the overall community. Dung beetle forest specialists and habitat generalists showed opposing assembly mechanisms in primary forest, community assembly of habitat generalists for both taxa differed with disturbance intensity, and insectivorous birds strongly influenced overall community assembly relative to other guilds. Our study reveals the sensitivity of community assembly mechanisms to anthropogenic disturbance via a shift in the relative contribution of stochastic and deterministic processes. This highlights the need for greater understanding of how habitat modification alters species interactions and the importance of incorporating species' traits within assessments.
    Matched MeSH terms: Birds
  17. Fulltext Plasmodium-a brief introduction to the parasites causing human malaria and their basic biology
    Sato S
    J Physiol Anthropol, 2021 Jan 07;40(1):1.
    PMID: 33413683 DOI: 10.1186/s40101-020-00251-9
    Malaria is one of the most devastating infectious diseases of humans. It is problematic clinically and economically as it prevails in poorer countries and regions, strongly hindering socioeconomic development. The causative agents of malaria are unicellular protozoan parasites belonging to the genus Plasmodium. These parasites infect not only humans but also other vertebrates, from reptiles and birds to mammals. To date, over 200 species of Plasmodium have been formally described, and each species infects a certain range of hosts. Plasmodium species that naturally infect humans and cause malaria in large areas of the world are limited to five-P. falciparum, P. vivax, P. malariae, P. ovale and P. knowlesi. The first four are specific for humans, while P. knowlesi is naturally maintained in macaque monkeys and causes zoonotic malaria widely in South East Asia. Transmission of Plasmodium species between vertebrate hosts depends on an insect vector, which is usually the mosquito. The vector is not just a carrier but the definitive host, where sexual reproduction of Plasmodium species occurs, and the parasite's development in the insect is essential for transmission to the next vertebrate host. The range of insect species that can support the critical development of Plasmodium depends on the individual parasite species, but all five Plasmodium species causing malaria in humans are transmitted exclusively by anopheline mosquitoes. Plasmodium species have remarkable genetic flexibility which lets them adapt to alterations in the environment, giving them the potential to quickly develop resistance to therapeutics such as antimalarials and to change host specificity. In this article, selected topics involving the Plasmodium species that cause malaria in humans are reviewed.
    Matched MeSH terms: Birds
  18. Fulltext Isolation of Mycobacterium avium and other nontuberculous mycobacteria in chickens and captive birds in peninsular Malaysia
    Sattar A, Zakaria Z, Abu J, Aziz SA, Rojas-Ponce G
    BMC Vet Res, 2021 Jan 07;17(1):13.
    PMID: 33413380 DOI: 10.1186/s12917-020-02695-8
    BACKGROUND: Mycobacterium avium complex (MAC) causes a chronic infectious in the birds known as avian mycobacteriosis. Almost all species of the birds are susceptible to MAC which consists of two closely related species of mycobacteria, that is, M. avium and M. intracellulare. This study aimed to determine the occurrence of Mycobacterium avium subsp. avium (MAA) in chickens and captive birds in selected states of Peninsular Malaysia.

    RESULTS: A 300 fecal samples were collected from village chickens (n = 100), layer chickens (n = 100) and captive birds (n = 100). Fecal samples were split into two aliquots for microbiological and molecular detection of MAA. Microbiology detection consisted of microscopy (Ziehl-Neelsen staining) and culture of samples decontaminated with 1% Cetylperidinium chloride and vancomycin, nalidixic acid and amphotericin B (VNA) antibiotic cocktail [vancomycin (VAN) 100 μg/ml, nalidixic acid (NAL) 100 μg/ml and amphotericin B (AMB) 50 μg/ml] onto Löwenstein-Jensen (L-J). Molecular detection (PCR-IS901) was performed to detect MAA DNA from the feces and PCR-16S rRNA and IS901 for identification of genus Mycobacterium and Mycobacterium avium sub species avium isolated onto L-J. All samples (296) were AFB negative smear. M. avium was isolated in 0.3% (1/296) samples by culture and detected in 2.5% (6/242) samples by PCR (IS901). Other mycobacteria were found in 1.7% (5/296) chickens. Of five isolates, two were identified as Mycobacterium terrae and M. engbaekii and remaining isolates were not sequenced. Birds positive for M. avium included White Pelican (n = 1) Black Hornbill (n = 1), Macaw (n = 2), Cockatoo (n = 2) and village chicken (n = 1).

    CONCLUSION: It is concluded that chickens and birds were infected with M. avium in selected areas of Peninsular Malaysia. Although, PCR is rapid, reliable and cost effective method for detection of M. avium in a subclinical stage, the culture of the avian feces should still be used as a reference test for the diagnosis of avian tuberculosis.

    Matched MeSH terms: Birds
  19. Fulltext Genetic Identification of Edible Bird's Nest in Thailand Based on ARMS-PCR
    Lv D, Fan Y, Zhong W, Lonan P, Liu K, Wu M, et al.
    Front Genet, 2021;12:632232.
    PMID: 33763113 DOI: 10.3389/fgene.2021.632232
    Edible bird's nest (EBN) is a popular delicacy in the Asian Pacific region originating from Indonesia, Malaysia, Thailand and Vietnam, which consist of various potential medicine value in Traditional Chinese Medicine (TCM). Thailand is one of the main exporters of EBN. However, the genetic information of EBN, a key part of molecular biology, has yet to be reported in Thailand. It is necessary to explore the genetic information of EBN in Thailand based on a quick and simple method to help protect the rights and interests of consumers. This research aimed to systematically evaluate different methods of extracting EBN DNA to improve the efficiency of the analysis of cytochrome b (Cytb) and NADH dehydrogenase subunit 2 (ND2) gene sequences, the establishment of phylogenetic trees, and the genetic information of EBN in Thailand. Additionally, we aimed to develop a quick and simple method for identifying EBN from different species based on the genetic information and amplification-refractory mutation system PCR (ARMS-PCR). By comparing the four methods [cetyltrimethylammonium bromide (CTAB), sodium dodecyl sulfate (SDS), kit and guanidinium isothiocyanate methods] for EBN extraction, we found that the guanidinium isothiocyanate method was the optimal extraction method. Phylogenetic trees generated on the basis of Cytb and ND2 gene analyses showed that 26 samples of house EBN and 4 samples of cave EBN came from Aerodramus fuciphagus and Aerodramus maximus, respectively. In addition, to distinguish different samples from different species of Apodiformes, we designed 4 polymerase chain reaction (PCR) amplification primers based on the ND2 gene sequences of A. fuciphagus and A. maximus. The ARMS-PCR results showed band lengths for A. fuciphagus EBN of 533, 402, and 201 bp, while those for A. maximus EBN were 463, 317, and 201 bp. Collectively, the results showed that ARMS-PCR is a fast and simple method for the genetic identification of EBN based on designing specific original identification primers.
    Matched MeSH terms: Birds
  20. Potential Residual Contaminants in Edible Bird's Nest
    Yeo BH, Tang TK, Wong SF, Tan CP, Wang Y, Cheong LZ, et al.
    Front Pharmacol, 2021;12:631136.
    PMID: 33833681 DOI: 10.3389/fphar.2021.631136
    Edible bird's nest (EBN) is recognized as a nourishing food among Chinese people. The efficacy of EBN was stated in the records of traditional Chinese medicine and its activities have been reported in many researches. Malaysia is the second largest exporter of EBNs in the world, after Indonesia. For many years, EBN trade to China was not regulated until August 2011, when a safety alert was triggered for the consumption of EBNs. China banned the import of EBNs from Malaysia and Indonesia due to high level of nitrite. Since then, the Malaysia government has formulated Malaysia Standards for swiftlet farming (MS 2273:2012), edible bird's nest processing plant design and management (MS 2333:2010), and edible bird's nest product quality (MS 2334:2011) to enable the industry to meet the specified standards for the export to China. On the other hand, Indonesia's EBN industry formulated a standard operating procedure (SOP) for exportation to China. Both countries can export EBNs to China by complying with the standards and SOPs. EBN contaminants may include but not limited to nitrite, heavy metals, excessive minerals, fungi, bacteria, and mites. The possible source of contaminants may come from the swiftlet farms and the swiftlets or introduced during processing, storage, and transportation of EBNs, or adulterants. Swiftlet house design and management, and EBN processing affect the bird's nest color. Degradation of its optical quality has an impact on the selling price, and color changes are tied together with nitrite level. In this review, the current and future prospects of EBNs in Malaysia and Indonesia in terms of their quality, and the research on the contaminants and their effects on EBN color changes are discussed.
    Matched MeSH terms: Birds
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