A nearly complete human skeleton dating to the Early Holocene (epi-Paleolithic culture) excavated from Gua Gunung Runtuh, Malaysia, is described. Cranial, dental, and limb bone measurements are recorded on the skeleton, and compared with early and modern skeletal samples from Southeast Asia and Australia. The comparisons demonstrate that the Gua Gunung specimen is most similar to Australian Aborigines in dental and limb measurements, while the cranial measurements indicate a close affinity to Mesolithic samples from Malaysia and Flores. These findings further suggest that the Gua Gunung skeleton, as well as other fossils from Tabon and Niah, are representative of an early group of people who occupied Sundaland during the late Pleistocene, and may be the ancestors of Australian Aborigines. Some of the dental and limb bone measurements exhibited by the ancestors persist in Southeast Asian populations until the early Holocene. Differences in cranial traits have, however, accumulated since the late Pleistocene in Australian Aborigines and early Southeast Asian peoples.
This article uses metric and nonmetric dental data to test the "two-layer" or immigration hypothesis whereby Southeast Asia was initially occupied by an "Australo-Melanesian" population that later underwent substantial genetic admixture with East Asian immigrants associated with the spread of agriculture from the Neolithic period onwards. We examined teeth from 4,002 individuals comprising 42 prehistoric and historic samples from East Asia, Southeast Asia, Australia, and Melanesia. For the odontometric analysis, dental size proportions were compared using factor analysis and Q-mode correlation coefficients, and overall tooth size was also compared between population samples. Nonmetric population affinities were estimated by Smith's distances, using the frequencies of 16 tooth traits. The results of both the metric and nonmetric analyses demonstrate close affinities between recent Australo-Melanesian samples and samples representing early Southeast Asia, such as the Early to Middle Holocene series from Vietnam, Malaysia, and Flores. In contrast, the dental characteristics of most modern Southeast Asians exhibit a mixture of traits associated with East Asians and Australo-Melanesians, suggesting that these populations were genetically influenced by immigrants from East Asia. East Asian metric and/or nonmetric traits are also found in some prehistoric samples from Southeast Asia such as Ban Kao (Thailand), implying that immigration probably began in the early Neolithic. Much clearer influence of East Asian immigration was found in Early Metal Age Vietnamese and Sulawesi samples. Although the results of this study are consistent with the immigration hypothesis, analysis of additional Neolithic samples is needed to determine the exact timing of population dispersals into Southeast Asia.
Recent research in Europe, Africa, and Southeast Asia suggests that we can no longer assume a direct and exclusive link between anatomically modern humans and behavioral modernity (the 'human revolution'), and assume that the presence of either one implies the presence of the other: discussions of the emergence of cultural complexity have to proceed with greater scrutiny of the evidence on a site-by-site basis to establish secure associations between the archaeology present there and the hominins who created it. This paper presents one such case study: Niah Cave in Sarawak on the island of Borneo, famous for the discovery in 1958 in the West Mouth of the Great Cave of a modern human skull, the 'Deep Skull,' controversially associated with radiocarbon dates of ca. 40,000 years before the present. A new chronostratigraphy has been developed through a re-investigation of the lithostratigraphy left by the earlier excavations, AMS-dating using three different comparative pre-treatments including ABOX of charcoal, and U-series using the Diffusion-Absorption model applied to fragments of bones from the Deep Skull itself. Stratigraphic reasons for earlier uncertainties about the antiquity of the skull are examined, and it is shown not to be an 'intrusive' artifact. It was probably excavated from fluvial-pond-desiccation deposits that accumulated episodically in a shallow basin immediately behind the cave entrance lip, in a climate that ranged from times of comparative aridity with complete desiccation, to episodes of greater surface wetness, changes attributed to regional climatic fluctuations. Vegetation outside the cave varied significantly over time, including wet lowland forest, montane forest, savannah, and grassland. The new dates and the lithostratigraphy relate the Deep Skull to evidence of episodes of human activity that range in date from ca. 46,000 to ca. 34,000 years ago. Initial investigations of sediment scorching, pollen, palynomorphs, phytoliths, plant macrofossils, and starch grains recovered from existing exposures, and of vertebrates from the current and the earlier excavations, suggest that human foraging during these times was marked by habitat-tailored hunting technologies, the collection and processing of toxic plants for consumption, and, perhaps, the use of fire at some forest-edges. The Niah evidence demonstrates the sophisticated nature of the subsistence behavior developed by modern humans to exploit the tropical environments that they encountered in Southeast Asia, including rainforest.
Nipa (Nypa fruticans) is one of the most widely distributed and useful palm in the mangrove forests in the South, Southeast Asia and Oceania. Its distribution area is known to be larger in ancient time than at present, as evidenced by its fossils found in North America, South America, Egypt and Europe. Nipa has a wide diversity of use. Traditionally it is used as roof materials, cigarette wrapper, medicine and its sap is fermented to alcohol. Recently, research on nipa has focused on its potential use as a biofuel crop because it has several advantages compared with other biofuel-alcohol crops. For example it has high alcohol content, no competition with other crop for agricultural land and no bagasse disposal problem. In spite of such usefulness, scientific reports on biology of nipa are limited. Information on genetic diversity, cytogenetics and chemical composition are lacking for nipa plant. On the other hand, morphological characters of nipa have been described in many reports. This paper attempted to provide a general review of the nipa plant based on available literatures.
During the last quarter of the twentieth century there have been intensive research activities looking for green sources of energy. The main aim of the green generators or converters of energy is to replace the conventional (fossil) energy sources, hence reducing further accumulation of the green house gasses GHGs. Conventional silicon and III-V semiconductor solar cell based on crystalline bulk, quantum well and quantum dots structure or amorphous and thin film structures provided a feasible solution. However, natural dye sensitized solar cells NDSSC are a promising class of photovoltaic cells with the capability of generating green energy at low production cost since no vacuum systems or expensive equipment are required in their fabrication. Also, natural dyes are abundant, easily extracted and safe materials. In NDSSC, once dye molecules exposed to light they become oxidized and transfer electrons to a nanostructured layer of wide bandgap semiconductors such as TiO2. The generated electrons are drawn outside the cell through ohmic contact to a load. In this paper we review the structure and operation principles of the dye sensitized solar cell DSSC. We discuss preparation procedures, optical and electrical characterization of the NDSSC using local dyes extracted from Henna (lawsonia inermis L.), pomegranate, cherries and Bahraini raspberries (rubus spp.). These natural organic dyes are potential candidates to replace some of the man-made dyes used as sensitizer in many commercialized photoelectrochemical cells. Factors limiting the operation of the DSSC are discussed. NDSSCs are expected to be a favored choice in the building-integrated
photovoltaics (BIPV) due to their robustness, therefore, requiring no special shielding from natural events such as tree strikes or hails.
Over many years of his life, the British naturalist Alfred Russel Wallace (1823-1913) explored the tropical forests of Malaysia, collecting numerous specimens, including hundreds of birds, many of them new to science. Subsequently, Wallace published a series of papers on systematic ornithology, and discovered a new species on top of a volcano on Ternate, where he wrote, in 1858, his famous essay on natural selection. Based on this hands-on experience, and an analysis of an Archaeopteryx fossil, Wallace suggested that birds may have descended from dinosaurian ancestors. Here, we describe the "dinosaur-bird hypothesis" that originated with the work of Thomas H. Huxley (1825-1895). We present the strong evidence linking theropod dinosaurs to birds, and briefly outline the long and ongoing controversy around this concept. Dinosaurs preserving plumage, nesting sites and trace fossils provide overwhelming evidence for the dinosaurian origin of birds. Based on these recent findings of paleontological research, we conclude that extant birds indeed descended, with some modifications, from small, Mesozoic theropod dinosaurs. In the light of Wallace's view of bird origins, we critically evaluate recent opposing views to this idea, including Ernst Mayr's (1904-2005) arguments against the "dinosaur-bird hypothesis", and document that this famous ornithologist was not correct in his assessment of this important aspect of vertebrate evolution.
Nine isolated fossil Pongo teeth from two cave sites in Peninsular Malaysia are reported. These are the first fossil Pongo specimens recorded in Peninsular Malaysia and represent significant southward extensions of the ancient Southeast Asian continental range of fossil Pongo during two key periods of the Quaternary. These new records from Peninsular Malaysia show that ancestral Pongo successfully passed the major biogeographical divide between mainland continental Southeast Asia and the Sunda subregion before 500 ka (thousand years ago). If the presence of Pongo remains in fossil assemblages indicates prevailing forest habitat, then the persistence of Pongo at Batu Caves until 60 ka implies that during the Last Glacial Phase sufficient forest cover persisted in the west coast plain of what is now Peninsular Malaysia at least ten millennia after a presumed corridor of desiccation had extended to central and east Java. Ultimately, environmental conditions of the peninsula during the Last Glacial Maximum evidently became inhospitable for Pongo, causing local extinction. Following post-glacial climatic amelioration and reforestation, a renewed sea barrier prevented re-colonization from the rainforest refugium in Sumatra, accounting for the present day absence of Pongo in apparently hospitable lowland evergreen rainforest of Peninsular Malaysia. The new teeth provide further evidence that Pongo did not undergo a consistent trend toward dental size reduction over time.
The small pseudoscorpion family Pseudochiridiidae Chamberlin, 1923 comprises two genera and 12 extant species recorded from Asia (Burma, Christmas Island, Indonesia, India, Nepal, Malaysia, New Guinea, Philippines, Nicobars and Sumba), eastern, central and southern Africa (Chad, D.R. Congo, Kenya, South Africa, Tanzania), Madagascar, Seychelles (Aldabra), North America (Florida) and the Caribbean Islands of Dominican Republic and Cuba (Harvey 2013, Barba & Barroso 2013); one unidentified species is mentioned for the fauna of Mexico (Ceballos 2004). A fossil species has been described from Dominican amber by Judson (2007), who predicted the presence of this family in South America.
Anthropogenic airborne depositions of 210Po,
210Pb and 210Po/210Pb in the mosses and surface soils
collected at the vicinity of a coal-fired power plant were studied. The purpose of the study was to
determine activity concentrations of 210Po,
210Pb and 210Po/210Pb for assessing their variation
accumulation in the mosses and surface soils collected at the vicinity of a coal-fired power plant.
Other purposes were to determine their concentration factor (CF) in relation to track the potential
source of those radionuclides and to identify most suitable moss species as a biological indicator
for atmospheric deposition contaminants. In this study, different species of moss Leucobryum
aduncum, Campylopus serratus, Syrrhopodon ciliates and Vesicularia montagnei were collected in
May 2011 at the area around 15 km radius from Tanjung Bin coal-fired power plant located in
Pontian, Johor. The activity concentrations of 210Po,
210Pb and 210Po/210Pb in mosses were in the
range of 76.81 ± 4.94 – 251.33 ± 16.33 Bq/kg dry wt., 54.37 ± 3.38 – 164.63 ± 11.64 Bq/kg dry wt.
and 1.10 – 2.00, respectively. Meanwhile the ranges for those radionuclides in the surface soil
were 33.53 ± 2.10 – 179.67 ± 12.15 Bq/kg dry wt., 20.55 ± 1.33 – 106.62 ± 6.64 Bq/kg dry wt. and
1.61 – 2.44, respectively. Corresponding high ability of Leucobryum aduncum to accumulate more
210Po and 210Pb, wide geographical distribution, most abundant and high CF, therefore, the
findings can be concluded this species was the most suitable as a biological indicator for
atmospheric deposition contaminants such as 210Po and 210Pb. Furthermore, it is clear the
accumulation of 210Po and 210Pb in mosses might be supplied from various sources of atmospheric
deposition such as coal-fired power plant operation, industrial, agriculture and fertilizer activities,
burned fuel fossil and forest; and other potential sources. Meanwhile, the
Posidonomya is common in the Kubang Pasu and Singa Formations in northwest Peninsular Malaysia. It was discovered from the red mudstone layers (redbeds) in many localities in Langkawi Islands, Perlis and Kedah. Previous studies suggested that the age of Posidonomya ranged from Middle Devonian to Carboniferous. Posidonomya beds in Kedah and Perlis are located above the Tournaisian radiolarian chert layers. The age of Posidonomya from Peninsular Malaysia is comparable to those of Europe, Morocco, Turkey and South China which range from Tournaisian to Serpukhovian, Early Carboniferous. The fossil specimens exhibit morphological features closely related to Posidonomya becheri Bronn. Two taxa were identified namely Posidonomya becheri Bronn and Posidonomya cf. kochi (von Koenen). The occurrence of Posidonomya indicates that the age of the lower part of the Kubang Pasu and Singa Formations is Early Carboniferous. Its geographic distribution formed a wide paleobiogeographic province in the Paleo-Tethys. The province was located in the warm tropical-subtropical climatic zone. Therefore, Posidonomya can be a good indicator for warm climate. Its wide distribution and short stratigraphic range make it a good index fossil for the Early Carboniferous.
Bioethanol is a very environmentally friendly liquid biofuel that is not only renewable, but also sustainable. It is currently
deemed as a highly suitable additive and substitute energy source to replace fossil based fuel. In this study, bioethanol
was produced from sago hampas by using commercial amylase, cellulase and Saccharomyces cerevisiae via sequential
saccharification and simultaneous fermentation (SSSF), a modified version of the simultaneous saccharification and
fermentation (SSF) process. SSSF was performed on sago hampas at 2.5 and 5.0% (w/v) feedstock load for five days. The
samples taken from the SSSF broths were analysed via high performance liquid chromatography (HPLC) for ethanol, glucose
and acetic acid production. From the results obtained, SSSF with 5.0% sago hampas loading exhibited the highest ethanol
production at 14.13 g/L (77.43% of theoretical ethanol yield), while SSSF using 2.5% sago hampas loading produced
ethanol at 6.45 g/L (69.24% of theoretical ethanol yield). This study has shown that ethanol not only can be produced
from sago hampas using different enzyme mixtures and S. cerevisiae via SSSF, but yields were also high, making this
process highly promising for the production of cheap and sustainable ethanol as fuel.
Cambay amber originates from the warmest period of the Eocene, which is also well known for the appearance of early angiosperm-dominated megathermal forests. The humid climate of these forests may have triggered the evolution of epiphytic lineages of bryophytes; however, early Eocene fossils of bryophytes are rare. Here, we present evidence for lejeuneoid liverworts and pleurocarpous mosses in Cambay amber. The preserved morphology of the moss fossil is inconclusive for a detailed taxonomic treatment. The liverwort fossil is, however, distinctive; its zig-zagged stems, suberect complicate-bilobed leaves, large leaf lobules, and small, deeply bifid underleaves suggest a member of Lejeuneaceae subtribe Lejeuneinae (Harpalejeunea, Lejeunea, Microlejeunea). We tested alternative classification possibilities by conducting divergence time estimates based on DNA sequence variation of Lejeuneinae using the age of the fossil for corresponding age constraints. Consideration of the fossil as a stem group member of Microlejeunea or Lejeunea resulted in an Eocene to Late Cretaceous age of the Lejeuneinae crown group. This reconstruction is in good accordance with published divergence time estimates generated without the newly presented fossil evidence. Balancing available evidence, we describe the liverwort fossil as the extinct species Microlejeunea nyiahae, representing the oldest crown group fossil of Lejeuneaceae.
This study was performed to observe the variation in the distribution of 210Po,210Pb and 210Po/210Pb activity ratio throughtheir vertical profile of the sediment cores takenat surrounding Sungai Linggi estuary. Five sediment cores were takenin February 2011 and were cutto an intervalof 2 cm layer. Activity concentrations of 210Po and 210Pb were determined using alpha radiochemical analysis and gamma direct measurement, respectively. Generally, the measured activity of 210Po, 210Pb and 210Po/210Pbwere in the ranges of 22.73 –139.06 Bqkg-1dw., 37.88 –176.24 Bqkg-1dw.and 0.23 –1.34, respectively. The variation in the distribution profile for the radionuclides are believed to be influencedby human activities such as agriculture, fertilizer, vehicles, burned fuel fossil and forest, industrialand others via river input from land-base.Other factor is due to organic mattercontent played importantrole as the geochemical carrier to transportthose radionuclides at study area. It was provedthat hasa strong correlation between the radionuclide distribution and the sedimentcomposition of organic matter.Furthermore, in those rangesreflectedthat 210Pb activities were higher than210Po with an activity ratio average of 0.79. This is probably due to dramatic increase of excess 210Pb supplied from atmospheric deposition, in situ decay of 226Ra and as a result of diagenetic remolibilazationof 210Pbin deeper layesof the sediment column. Thus, thosefactors are majorcontributions on thevariation of 210Po and 210Pb in the sediment core at surrounding Sungai Linggi estuary.
Myrteae (c. 2500 species; 51 genera) is the largest tribe of Myrtaceae and an ecologically important groups of angiosperms in the Neotropics. Systematic relationships in Myrteae are complex, hindering conservation initiatives and jeopardizing evolutionary modelling. A well-supported and robust phylogenetic hypothesis was here targeted towards a comprehensive understanding of the relationships within the tribe. The resultant topology was used as a base for key evolutionary analyses such as age estimation, historical biogeography and diversification rate patterns. One nuclear (ITS) and seven chloroplast (psbA-trnH, matK, ndhF, trnl-trnF, trnQ-rps16, rpl16 and rpl32-trnL) DNA regions for 115 taxa representing 46 out of the 51 genera in the tribe were accessed and analysed using maximum likelihood and Bayesian inference tools for phylogenetic reconstruction. Dates of diversification events were estimated and contrasted using two distinct fossil sets (macro and pollen) in BEAST. The subsequent dated phylogenies were compared and analysed for biogeographical patterns using BioGeoBEARS and diversification rates using BAMM. Myrteae phylogeny presents strong statistical support for three major clades within the tribe: Australasian group, Myrtus group and Main Neotropical Lineage. Dating results from calibration using macrofossil are an average of 20 million years older and show an early Paleocene origin of Myrteae, against a mid-Eocene one from the pollen fossil calibration. Biogeographic analysis shows the origin of Myrteae in Zealandia in both calibration approaches, followed by a widespread distribution throughout the still-linked Gondwana continents and diversification of Neotropical endemic lineages by later vicariance. Best configuration shift indicates three points of acceleration in diversification rates, all of them occurring in the Main Neotropical Lineage. Based on the reconstructed topology, several new taxonomic placements were recovered, including: the relative position of Myrtus communis, the placement of the Blepharocalyx group, the absence of generic endemism in the Caribbean, and the paraphyletism of the former Pimenta group. Distinct calibration approaches affect biogeography interpretation, increasing the number of necessary long distance dispersal events in the topology with older nodes. It is hypothesised that biological intrinsic factors such as modifications of embryo type and polyploidy might have played a role in accelerating shifts of diversification rates in Neotropical lineages. Future perspectives include formal subtribal classification, standardization of fossil calibration approaches and better links between diversification shifts and trait evolution.
The concept of long-lived (ancient) lakes has had a great influence on the development of evolutionary biogeography. According to this insight, a number of lakes on Earth have existed for several million years (e.g., Baikal and Tanganyika) and represent unique evolutionary hotspots with multiple intra-basin radiations. In contrast, rivers are usually considered to be variable systems, and the possibility of their long-term existence during geological epochs has never been tested. In this study, we reconstruct the history of freshwater basin interactions across continents based on the multi-locus fossil-calibrated phylogeny of freshwater mussels (Unionidae). These mussels most likely originated in Southeast and East Asia in the Jurassic, with the earliest expansions into North America and Africa (since the mid-Cretaceous) following the colonization of Europe and India (since the Paleocene). We discovered two ancient monophyletic mussel radiations (mean age ~51-55 Ma) within the paleo-Mekong catchment (i.e., the Mekong, Siam, and Malacca Straits paleo-river drainage basins). Our findings reveal that the Mekong may be considered a long-lived river that has existed throughout the entire Cenozoic epoch.
As fossil energy resources are depleting quick and energy security is playing a vital role in the world economy. Quest for alternative energy sources have turned researches investigation in waste foods for next generation fuel. Biodiesel is usually considered to be environmentally friendly as it reduces greenhouse gas emission. Fish wastes rich in fatty acids and can be used as the raw material to produce biodiesel through transesterification reaction. The results showed that the seven peaks are fatty acid methyl esters, indicating all the triglycerides were successfully methylated to methyl esters. Fish based biodiesel provided a significant reduction in carbon monoxide (CO) and hydrocarbon (HC) emissions under engine loads of 15 (Nm) and required no engine modification. The viscosity of the produced biodiesel was within the range of international standards (ASTM). The biodiesel was found to contain a low base number and exhibited a lower specific fuel consumption compared to the conventional diesel. It can be concluded that biodiesel derived from waste fish oil can be considered as a potential source of commercial biodiesel.
Dispersal of soil-dwelling organisms via the repeatedly exposed Sunda shelf through much of the Pleistocene in Southeast Asia has not been studied extensively, especially for invertebrates. Here we investigated the phylogeography of an endemic termite species, Macrotermes gilvus (Hagen), to elucidate the spatiotemporal dynamics of dispersal routes of terrestrial fauna in Pleistocene Southeast Asia. We sampled 213 termite colonies from 66 localities throughout the region. Independently inherited microsatellites and mtDNA markers were used to infer the phylogeographic framework of M. gilvus. Discrete phylogeographic analysis and molecular dating based on fossil calibration were used to infer the dynamics of M. gilvus dispersal in time and space across Southeast Asia. We found that the termite dispersal events were consistently dated within the Pleistocene time frame. The dispersal pattern was multidirectional, radiating eastwards and southwards out of Indochina, which was identified as the origin for dispersal events. We found no direct dispersal events between Sumatra and Borneo despite the presence of a terrestrial connection between them during the Pleistocene. Instead, central Java served as an important link allowing termite colonies to be established in Borneo and Sumatra. Our findings support the hypothesis of a north-south dispersal corridor in Southeast Asia and suggest the presence of alternative dispersal routes across Sundaland during the Pleistocene. For the first time, we also propose that a west-east dispersal through over-water rafting likely occurred across the Pleistocene South China Sea. We found at least two independent entry routes for terrestrial species to infiltrate Sumatra and Borneo at different times.
The origin of the elephant on the island of Borneo remains elusive. Research has suggested two alternative hypotheses: the Bornean elephant stems either from a recent introduction in the 17th century or from an ancient colonization several hundreds of thousands years ago. Lack of elephant fossils has been interpreted as evidence for a very recent introduction, whereas mtDNA divergence from other Asian elephants has been argued to favor an ancient colonization. We investigated the demographic history of Bornean elephants using full-likelihood and approximate Bayesian computation analyses. Our results are at odds with both the recent and ancient colonization hypotheses, and favour a third intermediate scenario. We find that genetic data favour a scenario in which Bornean elephants experienced a bottleneck during the last glacial period, possibly as a consequence of the colonization of Borneo, and from which it has slowly recovered since. Altogether the data support a natural colonization of Bornean elephants at a time when large terrestrial mammals could colonise from the Sunda shelf when sea levels were much lower. Our results are important not only in understanding the unique history of the colonization of Borneo by elephants, but also for their long-term conservation.
Inferring interfamilial relationships within the eudicot order Ericales has remained one of the more recalcitrant problems in angiosperm phylogenetics, likely due to a rapid, ancient radiation. As a result, no comprehensive time-calibrated tree or biogeographical analysis of the order has been published. Here, we elucidate phylogenetic relationships within the order and then conduct time-dependent biogeographical and diversification analyses by using a taxon and locus-rich supermatrix approach on one-third of the extant species diversity calibrated with 23 macrofossils and two secondary calibration points. Our results corroborate previous studies and also suggest several new but poorly supported relationships. Newly suggested relationships are: (1) holoparasitic Mitrastemonaceae is sister to Lecythidaceae, (2) the clade formed by Mitrastemonaceae + Lecythidaceae is sister to Ericales excluding balsaminoids, (3) Theaceae is sister to the styracoids + sarracenioids + ericoids, and (4) subfamilial relationships with Ericaceae suggest that Arbutoideae is sister to Monotropoideae and Pyroloideae is sister to all subfamilies excluding Arbutoideae, Enkianthoideae, and Monotropoideae. Our results indicate Ericales began to diversify 110 Mya, within Indo-Malaysia and the Neotropics, with exchange between the two areas and expansion out of Indo-Malaysia becoming an important area in shaping the extant diversity of many families. Rapid cladogenesis occurred along the backbone of the order between 104 and 106 Mya. Jump dispersal is important within the order in the last 30 My, but vicariance is the most important cladogenetic driver of disjunctions at deeper levels of the phylogeny. We detect between 69 and 81 shifts in speciation rate throughout the order, the vast majority of which occurred within the last 30 My. We propose that range shifting may be responsible for older shifts in speciation rate, but more recent shifts may be better explained by morphological innovation.