Displaying publications 1 - 20 of 389 in total

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  1. Fayle TM, Turner EC, Basset Y, Ewers RM, Reynolds G, Novotny V
    Trends Ecol Evol, 2015 Jun;30(6):334-46.
    PMID: 25896491 DOI: 10.1016/j.tree.2015.03.010
    Tropical forests are highly diverse systems involving extraordinary numbers of interactions between species, with each species responding in a different way to the abiotic environment. Understanding how these systems function and predicting how they respond to anthropogenic global change is extremely challenging. We argue for the necessity of 'whole-ecosystem' experimental manipulations, in which the entire ecosystem is targeted, either to reveal the functioning of the system in its natural state or to understand responses to anthropogenic impacts. We survey the current range of whole-ecosystem manipulations, which include those targeting weather and climate, nutrients, biotic interactions, human impacts, and habitat restoration. Finally we describe the unique challenges and opportunities presented by such projects and suggest directions for future experiments.
    Matched MeSH terms: Forests*
  2. Clements GR, Lynam AJ, Gaveau D, Yap WL, Lhota S, Goosem M, et al.
    PLoS One, 2014;9(12):e115376.
    PMID: 25521297 DOI: 10.1371/journal.pone.0115376
    Habitat destruction and overhunting are two major drivers of mammal population declines and extinctions in tropical forests. The construction of roads can be a catalyst for these two threats. In Southeast Asia, the impacts of roads on mammals have not been well-documented at a regional scale. Before evidence-based conservation strategies can be developed to minimize the threat of roads to endangered mammals within this region, we first need to locate where and how roads are contributing to the conversion of their habitats and illegal hunting in each country. We interviewed 36 experts involved in mammal research from seven Southeast Asian countries to identify roads that are contributing the most, in their opinion, to habitat conversion and illegal hunting. Our experts highlighted 16 existing and eight planned roads - these potentially threaten 21% of the 117 endangered terrestrial mammals in those countries. Apart from gathering qualitative evidence from the literature to assess their claims, we demonstrate how species-distribution models, satellite imagery and animal-sign surveys can be used to provide quantitative evidence of roads causing impacts by (1) cutting through habitats where endangered mammals are likely to occur, (2) intensifying forest conversion, and (3) contributing to illegal hunting and wildlife trade. To our knowledge, ours is the first study to identify specific roads threatening endangered mammals in Southeast Asia. Further through highlighting the impacts of roads, we propose 10 measures to limit road impacts in the region.
    Matched MeSH terms: Forests*
  3. Hussein Aliu Sule, Ahmad Ismail, Mohammad Noor Azmai Amal, Syaizwan Zahmir Zulkifli, Mohd Fauzul Aidil Mohd Roseli, Shamarina Shohaimi
    Sains Malaysiana, 2018;47:2589-2600.
    Tropical peat swamp forest (PSF) is one of the most endangered ecosystems in the world. However, the impacts of
    anthropogenic activities in PSF and its conversion area towards fish biodiversity are less understood. This study
    investigates the influences of water physico-chemical parameters on fish occurrences in peat swamp, paddy field and
    oil palm plantation in the North Selangor peat swamp forest (NSPSF), Selangor, Malaysia. Fish and water samples were
    collected from four sites located in the peat swamps, while two sites were located in the paddy field and oil palm plantation
    areas. Multivariate analyses were used to determine the associations between water qualities and fish occurrences in
    the three habitats. A total of 1,382 individual fish, belonging to 10 families, 15 genera and 20 species were collected.
    The family Cyprinidae had the highest representatives, followed by Bagridae and Osphronemidae. The most abundant
    species was Barbonymus schwanefeldii (Bleeker 1854), while the least abundant was Wallago leerii Bleeker, 1851. The
    paddy field and oil palm plantation area recorded significantly higher fish diversity and richness relative to peat swamp
    (p<0.05). The water physico-chemical parameters, such as pH, DO, NH3
    -N, PO4, SO4
    , and Cl2 showed no significant
    difference between paddy field and oil palm plantation (p>0.05), but was significantly different from the peat swamp
    (p<0.05). However, no water quality parameter was consistently observed to be associated with fish occurrences in all
    of the three habitats, but water temperature, NH3
    -N, Cl2, SO4
    , and EC were at least associated with fish occurrences in
    two habitats studied. This study confirmed that each habitat possess different water quality parameters associated with
    fish occurrences. Understanding all these ecological aspects could help future management and conservation of NSPSF.
    Matched MeSH terms: Forests
  4. Tham HW, Balasubramaniam V, Ooi MK, Chew MF
    Front Microbiol, 2018;9:1040.
    PMID: 29875751 DOI: 10.3389/fmicb.2018.01040
    Zika virus (ZIKV) has emerged as a new global health threat. Since its first discovery in Zika forest in Uganda, this virus has been isolated from several mosquito species, including Aedes aegypti and Aedes albopictus. The geographical distribution of these mosquito species across tropical and subtropical regions has led to several outbreaks, including the recent pandemic in Brazil, followed by the Pacific islands and other areas of North and South America. This has gained attention of the scientific community to elucidate the epidemiology and transmission of ZIKV. Despite its strong attention on clinical aspects for healthcare professionals, the relationships between ZIKV and its principal vectors, A. aegypti and A. albopictus, have not gained substantial interest in the scientific research community. As such, this review aims to summarize the current knowledge on ZIKV tropism and some important mechanisms which may be employed by the virus for effective strategies on viral survival in mosquitoes. In addition, this review identifies the areas of research that should be placed attention to, for which to be exploited for novel mosquito control strategies.
    Matched MeSH terms: Forests
  5. Hawkes FM, Manin BO, Cooper A, Daim S, R H, Jelip J, et al.
    Sci Rep, 2019 09 16;9(1):13312.
    PMID: 31527622 DOI: 10.1038/s41598-019-49842-2
    In lowland areas of Malaysia, Plasmodium knowlesi infection is associated with land use change and high proportions of the vector Anopheles balabacensis. We conducted a 15-month study in two Malaysian villages to determine the effect of habitat on vector populations in understudied high-altitude, high-incidence districts. Anopheles mosquitoes were sampled in human settlements, plantations and forest edges, and screened for Plasmodium species by PCR. We report the first An. donaldi positive for P. knowlesi. This potential vector was associated with habitat fragmentation measured as disturbed forest edge:area ratio, while An. balabacensis was not, indicating fragmented land use could favour An. donaldi. Anopheline species richness and diversity decreased from forest edge, to plantation, to human settlement. Greater numbers of An. balabacensis and An. donaldi were found in forest edges compared to human settlements, suggesting exposure to vectors and associated zoonoses may be greater for people entering this habitat.
    Matched MeSH terms: Forests
  6. Ummul-Nazrah AR, Mohd Hairul MA, Kamin I, Kiew R, Ong PT
    PhytoKeys, 2018.
    PMID: 29780269 DOI: 10.3897/phytokeys.98.23903
    Vatica najibiana Ummul-Nazrah (Dipterocarpaceae), from the Relai Forest Reserve, Gua Musang, Kelantan and Gua Tanggang, Merapoh, Pahang, is described and illustrated. This species is Endangered and known from small populations restricted to two isolated karst limestone hills. The type locality, Relai Forest Reserve limestone, is currently under threat from encroaching oil palm plantations and ongoing logging, which, if it continues, will threaten the Kelantan population with extinction. The morphology of V. najibiana and the similar V. odorata subsp. odorata and V. harmandiana is compared.
    Matched MeSH terms: Forests
  7. Yeoh SH, Satake A, Numata S, Ichie T, Lee SL, Basherudin N, et al.
    Mol Ecol, 2017 Oct;26(19):5074-5085.
    PMID: 28749031 DOI: 10.1111/mec.14257
    Elucidating the physiological mechanisms of the irregular yet concerted flowering rhythm of mass flowering tree species in the tropics requires long-term monitoring of flowering phenology, exogenous and endogenous environmental factors, as well as identifying interactions and dependencies among these factors. To investigate the proximate factors for floral initiation of mast seeding trees in the tropics, we monitored the expression dynamics of two key flowering genes, meteorological conditions and endogenous resources over two flowering events of Shorea curtisii and Shorea leprosula in the Malay Peninsula. Comparisons of expression dynamics of genes studied indicated functional conservation of FLOWERING LOCUS T (FT) and LEAFY (LFY) in Shorea. The genes were highly expressed at least 1 month before anthesis for both species. A mathematical model considering the synergistic effect of cool temperature and drought on activation of the flowering gene was successful in predicting the observed gene expression patterns. Requirement of both cool temperature and drought for floral transition suggested by the model implies that flowering phenologies of these species are sensitive to climate change. Our molecular phenology approach in the tropics sheds light on the conserved role of flowering genes in plants inhabiting different climate zones and can be widely applied to dissect the flowering processes in other plant species.
    Matched MeSH terms: Forests
  8. Boakes EH, Fuller RA, McGowan PJ, Mace GM
    Biol Lett, 2016 Mar;12(3).
    PMID: 26961894 DOI: 10.1098/rsbl.2015.0824
    Identifying local extinctions is integral to estimating species richness and geographic range changes and informing extinction risk assessments. However, the species occurrence records underpinning these estimates are frequently compromised by a lack of recorded species absences making it impossible to distinguish between local extinction and lack of survey effort-for a rigorously compiled database of European and Asian Galliformes, approximately 40% of half-degree cells contain records from before but not after 1980. We investigate the distribution of these cells, finding differences between the Palaearctic (forests, low mean human influence index (HII), outside protected areas (PAs)) and Indo-Malaya (grassland, high mean HII, outside PAs). Such cells also occur more in less peaceful countries. We show that different interpretations of these cells can lead to large over/under-estimations of species richness and extent of occurrences, potentially misleading prioritization and extinction risk assessment schemes. To avoid mistakes, local extinctions inferred from sightings records need to account for the history of survey effort in a locality.
    Matched MeSH terms: Forests
  9. Fish-Low CY, Abu Bakar S, Othman F, Chee HY
    Trop Biomed, 2018 Dec 01;35(4):1154-1159.
    PMID: 33601863
    Dengue virus (DENV) is maintained and circulated in both sylvatic/enzootic and endemic/human cycles and spill over infection of sylvatic DENV into human populations has been reported. Extensive deforestation and increase human activities in forest may increase the risk of human exposure to sylvatic dengue infection and this may become a threat to human. Present study investigated the changes in cell morphology and viral morphogenesis upon infection with sylvatic and endemic ecotypes in human monocytic U-937 cells using transmission electron microscopy. Autophagy, a process that is either pro-viral or anti-viral, was observed in U-937 cells of both infections, however only the replication of endemic DENV was evidenced. An insight into the infection responses of sylvatic progenitors of DENV in susceptible host cells may provide better understanding on dengue emergence in human populations.
    Matched MeSH terms: Forests
  10. Ng YF, Mound LA
    Zootaxa, 2016 Mar 07;4088(1):141-5.
    PMID: 27394331 DOI: 10.11646/zootaxa.4088.1.8
    The survey of Thysanoptera in peninsular Malaysia has been concentrated largely in areas growing crops and flowers around Kuala Lumpur, and the Cameron Highlands, and there are few records of these insects from native forests particularly in the northern part of the country. The two species described here were collected during a recent visit to Belum-Temengor Forest Complex, in Perak State, part of the second largest forested area on the peninsular, and connected to the Bang Lang National Park, in Yala Province, Thailand. This forest has been well known as home to a number of endangered animals, including Malayan tigers and Asian elephants, as well as remarkable plant species such as Rafflesia with the world's largest flowers (Abdullah et al. 2011). Despite this, forest areas are facing a major challenge from the insatiable demand for timber, palm oil and minerals, with an 80% increase in deforestation rate in Malaysia between 1990 and 2005 (FAO 2010). Forested land in peninsular Malaysia has been estimated at 5.88 million-ha or 44% of total area, but the coverage of reserved virgin forest is about 0.40 % or 23,002-ha (Dahlan 2008).
    Matched MeSH terms: Forests
  11. Harvey MB, O'connell KA, Barraza G, Riyanto A, Kurniawan N, Smith EN
    Zootaxa, 2015;4020(3):495-516.
    PMID: 26624112 DOI: 10.11646/zootaxa.4020.3.5
    We describe Cyrtodactylus psarops sp. nov. and C. semicinctus sp. nov., two new species of bent-toed geckos from montane forests in the southern Bukit Barisan Range of Sumatra, Indonesia. The new species are closely related to one another and to C. semenanjungensis, a lowland species currently known only from Peninsular Malaysia. Three characters of the new species immediately distinguish them from most congeners in the Sunda Region: they lack transversely enlarged subcaudals, have a precloacal depression, and have a greatly enlarged scale positioned at the apex of a continuous series of femoral and precloacal pore-bearing scales. They differ from one another in cephalic pattern, tuberculation of the brachium, and in numbers of cloacal tubercles, dorsal bands, and ventrals in a transverse row. The greatly enlarged scale at the apex of the precloacal pores appears to be a rare apomorphy of these two species and C. agamensis.
    Matched MeSH terms: Forests
  12. Grismer LL, Wood PL, Anuar S, Grismer MS, Quah ES, Murdoch ML, et al.
    Zootaxa, 2016 Apr 25;4105(5):401-29.
    PMID: 27394789 DOI: 10.11646/zootaxa.4105.5.1
    A new species of limestone cave-adapted gecko of the Cyrtodactylus pulchellus complex, C. hidupselamanya sp. nov., is described from an isolated karst formation at Felda Chiku 7, Kelantan, Peninsular Malaysia. This formation is scheduled to be completely quarried for its mineral content. From what we know about the life history of C. hidupselamanya sp. nov., this will result in its extinction. A new limestone forest-adapted species, C. lenggongensis sp. nov., from the Lenggong Valley, Perak was previously considered to be conspecific with C. bintangrendah but a re-evaluation of morphological, color pattern, molecular, and habitat preference indicates that it too is a unique lineage worthy of specific recognition. Fortunately C. lenggongensis sp. nov. is not facing extinction because its habitat is protected by the UNESCO Archaeological Heritage of the Lenggong Valley due to the archaeological significance of that region. Both new species can be distinguished from all other species of Cyrtodactylus based on molecular evidence from the mitochondrial gene ND2 and its flanking tRNAs as well as having unique combinations of morphological and color pattern characteristics. Using a time-calibrated BEAST analysis we inferred that the evolution of a limestone habitat preference and its apparently attendant morphological and color pattern adaptations evolved independently at least four times in the C. pulchellus complex between 26.1 and 0.78 mya.
    Matched MeSH terms: Forests
  13. Edwards FA, Edwards DP, Hamer KC, Fayle TM
    Oecologia, 2021 Mar;195(3):705-717.
    PMID: 33559003 DOI: 10.1007/s00442-020-04829-z
    Tropical rainforest disturbance and conversion are critical drivers of biodiversity loss. A key knowledge gap is understanding the impacts of habitat modification on mechanisms of community assembly, which are predicted to respond differently between taxa and across spatial scales. We use a null model approach to detect trait assembly of species at local- and landscape-scales, and then subdivide communities with different habitat associations and foraging guilds to investigate whether the detection of assembly mechanisms varies between groups. We focus on two indicator taxa, dung beetles and birds, across a disturbance gradient of primary rainforest, selectively logged rainforest, and oil palm plantations in Borneo, Southeast Asia. Random community assembly was predominant for dung beetles across habitats, whereas trait convergence, indicative of environmental filtering, occurred across the disturbance gradient for birds. Assembly patterns at the two spatial scales were similar. Subdividing for habitat association and foraging guild revealed patterns hidden when focusing on the overall community. Dung beetle forest specialists and habitat generalists showed opposing assembly mechanisms in primary forest, community assembly of habitat generalists for both taxa differed with disturbance intensity, and insectivorous birds strongly influenced overall community assembly relative to other guilds. Our study reveals the sensitivity of community assembly mechanisms to anthropogenic disturbance via a shift in the relative contribution of stochastic and deterministic processes. This highlights the need for greater understanding of how habitat modification alters species interactions and the importance of incorporating species' traits within assessments.
    Matched MeSH terms: Forests
  14. Gustafsson M, Gustafsson L, Alloysius D, Falck J, Yap S, Karlsson A, et al.
    Data Brief, 2016 Mar;6:466-70.
    PMID: 26900591 DOI: 10.1016/j.dib.2015.12.048
    The data presented in this paper is supporting the research article "Life history traits predict the response to increased light among 33 tropical rainforest tree species" [3]. We show basic growth and survival data collected over the 6 years duration of the experiment, as well as data from traits inventories covering 12 tree traits collected prior to and after a canopy reduction treatment in 2013. Further, we also include canopy closure and forest light environment data from measurements with hemispherical photographs before and after the treatment.
    Matched MeSH terms: Forests
  15. Cannon CH, Peart DR, Leighton M
    Science, 1998 Aug 28;281(5381):1366-8.
    PMID: 9721105
    The effects of commercial logging on tree diversity in tropical rainforest are largely unknown. In this study, selectively logged tropical rainforest in Indonesian Borneo is shown to contain high tree species richness, despite severe structural damage. Plots logged 8 years before sampling contained fewer species of trees greater than 20 centimeters in diameter than did similar-sized unlogged plots. However, in samples of the same numbers of trees (requiring a 50 percent larger area), logged forest contained as many tree species as unlogged forest. These findings warrant reassessment of the conservation potential of large tracts of commercially logged tropical rainforest.
    Matched MeSH terms: Forests
  16. Sloan S, Campbell MJ, Alamgir M, Lechner AM, Engert J, Laurance WF
    PLoS One, 2019;14(9):e0221947.
    PMID: 31532810 DOI: 10.1371/journal.pone.0221947
    The Heart of Borneo initiative has promoted the integration of protected areas and sustainably-managed forests across Malaysia, Indonesia, and Brunei. Recently, however, member states of the Heart of Borneo have begun pursuing ambitious unilateral infrastructure-development schemes to accelerate economic growth, jeopardizing the underlying goal of trans-boundary integrated conservation. Focusing on Sabah, Malaysia, we highlight conflicts between its Pan-Borneo Highway scheme and the regional integration of protected areas, unprotected intact forests, and conservation-priority forests. Road developments in southern Sabah in particular would drastically reduce protected-area integration across the northern Heart of Borneo region. Such developments would separate two major clusters of protected areas that account for one-quarter of all protected areas within the Heart of Borneo complex. Sabah has proposed forest corridors and highway underpasses as means of retaining ecological connectivity in this context. Connectivity modelling identified numerous overlooked areas for connectivity rehabilitation among intact forest patches following planned road development. While such 'linear-conservation planning' might theoretically retain up to 85% of intact-forest connectivity and integrate half of the conservation-priority forests across Sabah, in reality it is very unlikely to achieve meaningful ecological integration. Moreover, such measure would be exceedingly costly if properly implemented-apparently beyond the operating budget of relevant Malaysian authorities. Unless critical road segments are cancelled, planned infrastructure will fragment important conservation landscapes with little recourse for mitigation. This likelihood reinforces earlier calls for the legal recognition of the Heart of Borneo region for conservation planning as well as for enhanced tri-lateral coordination of both conservation and development.
    Matched MeSH terms: Forests
  17. Jucker T, Bongalov B, Burslem DFRP, Nilus R, Dalponte M, Lewis SL, et al.
    Ecol Lett, 2018 07;21(7):989-1000.
    PMID: 29659115 DOI: 10.1111/ele.12964
    Topography is a key driver of tropical forest structure and composition, as it constrains local nutrient and hydraulic conditions within which trees grow. Yet, we do not fully understand how changes in forest physiognomy driven by topography impact other emergent properties of forests, such as their aboveground carbon density (ACD). Working in Borneo - at a site where 70-m-tall forests in alluvial valleys rapidly transition to stunted heath forests on nutrient-depleted dip slopes - we combined field data with airborne laser scanning and hyperspectral imaging to characterise how topography shapes the vertical structure, wood density, diversity and ACD of nearly 15 km2 of old-growth forest. We found that subtle differences in elevation - which control soil chemistry and hydrology - profoundly influenced the structure, composition and diversity of the canopy. Capturing these processes was critical to explaining landscape-scale heterogeneity in ACD, highlighting how emerging remote sensing technologies can provide new insights into long-standing ecological questions.
    Matched MeSH terms: Forests*
  18. Ahmad MF, Abdullah H, Hassan MN, Jamaludin MI, Sivam A, Komatsu K, et al.
    Int J Mol Sci, 2023 Jan 03;24(1).
    PMID: 36614337 DOI: 10.3390/ijms24010872
    Soil ecosystems are home to a diverse range of microorganisms, but they are only partially understood because no single-cell sequencing or whole-community sequencing provides a complete picture of these complex communities. Using one of such metagenomics approaches, we succeeded in monitoring the microbial diversity and stress-response gene in the soil samples. This study aims to test whether known differences in taxonomic diversity and composition are reflected in functional gene profiles by implementing whole gene sequencing (WGS) metagenomic analysis of geographically dispersed soils from two distinct pristine forests. The study was commenced by sequencing three rainforest soil samples and three peat swamp soil samples. Soil richness effects were assessed by exploring the changes in specific functional gene abundances to elucidate physiological constraints acting on different soil systems and identify variance in functional pathways relevant to soil biogeochemical cycling. Proteobacteria shows abundances of microbial diversity for 52.15% in Royal Belum Reserved Forest and 48.28% in Raja Musa; 177 out of 1,391,841 and 449 out of 3,586,577 protein coding represent acidic stress-response genes for Royal Belum and Raja Musa, respectively. Raja Musa indicates pH 2.5, which is extremely acidic. The analysis of the taxonomic community showed that Royal Belum soils are dominated by bacteria (98% in Sungai Kooi (SK), 98% in Sungai Papan (SP), and 98% in Sungai Ruok (SR), Archaea (0.9% in SK, 0.9% in SP, and 1% in SR), and the remaining were classed under Eukaryota and viruses. Likewise, the soils of Raja Muda Musa are also dominated by bacteria (95% in Raja Musa 1 (RM1), 98% in Raja Musa 2 (RM2), and 96% in Raja Musa 3 (RM3)), followed by Archaea (4% in RM1, 1% in RM2, and 3% in RM3), and the remaining were classed under Eukaryota and viruses. This study revealed that RBFR (Royal Belum Foresr Reserve) and RMFR (Raja Musa Forest Reserve) metagenomes contained abundant stress-related genes assigned to various stress-response pathways, many of which did not show any difference among samples from both sites. Our findings indicate that the structure and functional potential of the microbial community will be altered by future environmental potential as the first glimpse of both the taxonomic and functional composition of soil microbial communities.
    Matched MeSH terms: Forests
  19. Sakai S, Kato M, Inoue T
    Am J Bot, 1999 May;86(5):646-58.
    PMID: 10330067
    The pollinators of 29 ginger species representing 11 genera in relation to certain floral morphological characteristics in a mixed-dipterocarp forest in Borneo were investigated. Among the 29 species studied, eight were pollinated by spiderhunters (Nectariniidae), 11 by medium-sized Amegilla bees (Anthophoridae), and ten by small halictid bees. These pollination guilds found in gingers in Sarawak are comparable to the pollination guilds of neotropical Zingiberales, i.e., hummingbird-, and euglossine-bee-pollinated guilds. Canonical discriminant analysis revealed that there were significant correlations between floral morphology and pollination guilds and suggests the importance of plant-pollinator interactions in the evolution of floral morphology. Most species in the three guilds were separated on the plot by the first and second canonical variables. Spiderhunter-pollinated flowers had longer floral tubes, while Amegilla-pollinated flowers had wider lips than the others, which function as a platform for the pollinators. Pistils and stamens of halictid-pollinated flowers were smaller than the others. The fact that gingers with diverse morphologies in a forest with high species diversity were grouped into only three pollination guilds and that the pollinators themselves showed low species diversity suggests that many species of rare understory plants have evolved without segregating pollinators in each pollination guild.
    Matched MeSH terms: Forests
  20. Zhang BS, Zhang F
    Zookeys, 2018.
    PMID: 30344434 DOI: 10.3897/zookeys.789.24261
    Three new species of the genus Asceua Thorell, 1887, from the natural forests of Malaysia, are described as Asceuabifurcasp. n. (♂♀), A.curvasp. n. (♂), and A.trimaculatasp. n. (♀). The genus Asceua is reported from Malaysia for the first time.
    Matched MeSH terms: Forests
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