Displaying publications 1 - 20 of 110 in total

  1. Sergeeva IA, Klinov DV, Schäffer TE, Dubrovin EV
    Int J Biol Macromol, 2023 Jul 01;242(Pt 2):124835.
    PMID: 37201883 DOI: 10.1016/j.ijbiomac.2023.124835
    Though the capability of chromium treatment to improve the stability and mechanical properties of collagen fibrils is well-known, the influence of different chromium salts on collagen molecules (tropocollagen) is not well characterized. In this study, the effect of Cr3+ treatment on the conformation and hydrodynamic properties of collagen was studied using atomic force microscopy (AFM) and dynamic light scattering (DLS). Statistical analysis of contours of adsorbed tropocollagen molecules using the two-dimensional worm-like chain model revealed a reduction of the persistence length (i.e., the increase of flexibility) from ≈72 nm in water to ≈56-57 nm in chromium (III) salt solutions. DLS studies demonstrated an increase of the hydrodynamic radius from ≈140 nm in water to ≈190 nm in chromium (III) salt solutions, which is associated with protein aggregation. The kinetics of collagen aggregation was shown to be ionic strength dependent. Collagen molecules treated with three different chromium (III) salts demonstrated similar properties such as flexibility, aggregation kinetics, and susceptibility to enzymatic cleavage. The observed effects are explained by a model that considers the formation of chromium-associated intra- and intermolecular crosslinks. The obtained results provide novel insights into the effect of chromium salts on the conformation and properties of tropocollagen molecules.
    Matched MeSH terms: Microscopy, Atomic Force/methods
  2. Kraevsky SV, Barinov NA, Morozova OV, Palyulin VV, Kremleva AV, Klinov DV
    Int J Mol Sci, 2023 Jun 06;24(12).
    PMID: 37372975 DOI: 10.3390/ijms24129827
    In the present work, complexes of DNA with nano-clay montmorillonite (Mt) were investigated by means of atomic force microscopy (AFM) under various conditions. In contrast to the integral methods of analysis of the sorption of DNA on clay, AFM allowed us to study this process at the molecular level in detail. DNA molecules in the deionized water were shown to form a 2D fiber network weakly bound to both Mt and mica. The binding sites are mostly along Mt edges. The addition of Mg2+ cations led to the separation of DNA fibers into separate molecules, which bound mainly to the edge joints of the Mt particles according to our reactivity estimations. After the incubation of DNA with Mg2+, the DNA fibers were capable of wrapping around the Mt particles and were weakly bound to the Mt edge surfaces. The reversible sorption of nucleic acids onto the Mt surface allows it to be used for both RNA and DNA isolation for further reverse transcription and polymerase chain reaction (PCR). Our results show that the strongest binding sites for DNA are the edge joints of Mt particles.
    Matched MeSH terms: Microscopy, Atomic Force/methods
  3. Ong HS, Syafiq-Rahim M, Kasim NH, Firdaus-Raih M, Ramlan EI
    J Biotechnol, 2016 Oct 20;236:141-51.
    PMID: 27569553 DOI: 10.1016/j.jbiotec.2016.08.017
    Fabrication of functional DNA nanostructures operating at a cellular level has been accomplished through molecular programming techniques such as DNA origami and single-stranded tiles (SST). During implementation, restrictive and constraint dependent designs are enforced to ensure conformity is attainable. We propose a concept of DNA polyominoes that promotes flexibility in molecular programming. The fabrication of complex structures is achieved through self-assembly of distinct heterogeneous shapes (i.e., self-organised optimisation among competing DNA basic shapes) with total flexibility during the design and assembly phases. In this study, the plausibility of the approach is validated using the formation of multiple 3×4 DNA network fabricated from five basic DNA shapes with distinct configurations (monomino, tromino and tetrominoes). Computational tools to aid the design of compatible DNA shapes and the structure assembly assessment are presented. The formations of the desired structures were validated using Atomic Force Microscopy (AFM) imagery. Five 3×4 DNA networks were successfully constructed using combinatorics of these five distinct DNA heterogeneous shapes. Our findings revealed that the construction of DNA supra-structures could be achieved using a more natural-like orchestration as compared to the rigid and restrictive conventional approaches adopted previously.
    Matched MeSH terms: Microscopy, Atomic Force
  4. Aryanto D, Zulkafli Othaman, Abd. Khamim Ismail, Amira Saryati Ameruddin
    In this research an atomic force microscopy (AFM) study on self-assembled In0.5Ga0.5As/GaAs quantum dots (QDs) was performed. Surface morphology of self-assembled In0.5Ga0.5As QDs changes with different growth time. Increasing growth time increased the dots size and decreased the dots density. In addiditon, self-assembled In0.5Ga0.5As QDs was grown on In0.1Ga0.9As underlying layer with different after-growth AsH3 flow time during cooling-down. The underlying layer caused lattice strain relaxation in the QDs on the surface. Increasing the period of AsH3 flow during cooling-down reduced the diameter of the dots and increased the density. The migration of groups III species in the growth of In0.5Ga0.5As/GaAs system was influenced by AsH3 flow during cooling-down period. This was due to the increase in surface population of active arsenic species. Underlying layer and the period of AsH3 flow during cooling-down are the two key factors in the fabrication of small and dense In0.5Ga0.5As QDs.
    Matched MeSH terms: Microscopy, Atomic Force
  5. Dehzangi A, Larki F, Hutagalung SD, Goodarz Naseri M, Majlis BY, Navasery M, et al.
    PLoS One, 2013;8(6):e65409.
    PMID: 23776479 DOI: 10.1371/journal.pone.0065409
    In this letter, we investigate the fabrication of Silicon nanostructure patterned on lightly doped (10(15) cm(-3)) p-type silicon-on-insulator by atomic force microscope nanolithography technique. The local anodic oxidation followed by two wet etching steps, potassium hydroxide etching for silicon removal and hydrofluoric etching for oxide removal, are implemented to reach the structures. The impact of contributing parameters in oxidation such as tip materials, applying voltage on the tip, relative humidity and exposure time are studied. The effect of the etchant concentration (10% to 30% wt) of potassium hydroxide and its mixture with isopropyl alcohol (10%vol. IPA ) at different temperatures on silicon surface are expressed. For different KOH concentrations, the effect of etching with the IPA admixture and the effect of the immersing time in the etching process on the structure are investigated. The etching processes are accurately optimized by 30%wt. KOH +10%vol. IPA in appropriate time, temperature, and humidity.
    Matched MeSH terms: Microscopy, Atomic Force/methods*
  6. Rasheed M, Jawaid M, Parveez B, Zuriyati A, Khan A
    Int J Biol Macromol, 2020 Oct 01;160:183-191.
    PMID: 32454108 DOI: 10.1016/j.ijbiomac.2020.05.170
    This work investigates the extraction of cellulose nanocrystals (CNC) from bamboo fibre as an alternative approach to utilize the waste bamboo fibre. In this study, bamboo fibre was subjected to acid hydrolysis for efficient isolation of CNC from bamboo fibre. The extracted CNC's were morphologically, characterized via Scanning Electron Microscopy (SEM), Transmission Electron Microscopy (TEM) and Atomic Force Microscopy (AFM). The energy Dispersive X-rays (EDX) provided the elemental composition of the prepared CNC's and X-ray diffractometer (XRD) exhibited their crystallinity. The physiochemical analysis was done via Fourier Transform Infrared (FTIR); and their thermal analysis was revealed by Thermogravimetric Analysis (TGA) and Differential scanning calorimetry (DSC). As from their morphological investigations, rod like structures of CNC's were observed under SEM analysis with higher carbon content as demonstrated by EDX, while needle shaped CNC's were observed from TEM and AFM studies. Acid hydrolysis for 45 min resulted into higher degree of crystallinity and higher yield of CNC's about 86.96% and 22% respectively. Owing to higher quality of CNC's obtained as a result of efficient and modified techniques, these can find potential usage in nanocomposites for biomedical and food packaging application.
    Matched MeSH terms: Microscopy, Atomic Force/methods
  7. Dehzangi A, Abdullah AM, Larki F, Hutagalung SD, Saion EB, Hamidon MN, et al.
    Nanoscale Res Lett, 2012;7(1):381.
    PMID: 22781031 DOI: 10.1186/1556-276X-7-381
    The junctionless nanowire transistor is a promising alternative for a new generation of nanotransistors. In this letter the atomic force microscopy nanolithography with two wet etching processes was implemented to fabricate simple structures as double gate and single gate junctionless silicon nanowire transistor on low doped p-type silicon-on-insulator wafer. The etching process was developed and optimized in the present work compared to our previous works. The output, transfer characteristics and drain conductance of both structures were compared. The trend for both devices found to be the same but differences in subthreshold swing, 'on/off' ratio, and threshold voltage were observed. The devices are 'on' state when performing as the pinch off devices. The positive gate voltage shows pinch off effect, while the negative gate voltage was unable to make a significant effect on drain current. The charge transmission in devices is also investigated in simple model according to a junctionless transistor principal.
    Matched MeSH terms: Microscopy, Atomic Force
  8. Wan Dagang WR, Bowen J, O'Keeffe J, Robbins PT, Zhang Z
    Biotechnol Lett, 2016 May;38(5):787-92.
    PMID: 26892223 DOI: 10.1007/s10529-016-2047-x
    The adhesion of colloidal probes of stainless steel, glass and cellulose to Pseudomonas fluorescens biofilms was examined using atomic force microscopy (AFM) to allow comparisons between surfaces to which biofilms might adhere.
    Matched MeSH terms: Microscopy, Atomic Force
  9. Lim, Kean Pah, Abdul Halim Shaari, Chen, Soo Kien, Ng, Siau Wei, Zalita Zainuddin, Ye, Chau Yuen
    A series of polycrystalline samples (La1-xSmx)0.67Sr0.33MnO3 (X=0.00, 0.05 and 0.10) were prepared using the conventional solid-state reaction method. The XRD analysis indicated that all the samples were fully crystalline and in a single phase with a rhombohedral structure after a sintering at 1200ºC for 24 hours in air. Meanwhile, the Atomic Force Microscopy measurements showed that a small amount of Sm doping in La sites affected the grain growth and this might affect the grain boundary layer, thus resulting in the reduction of the Curie temperature, TC. Extrinsic magnetoresistance (MR) was observed for all the samples with a large negative MR at low field (0-0.1 or 0.2T) region, followed by a slower varying MR at high field (0.1 or 0.2-1T). The highest low-field MR value of -4.6% (at 0.1T) and -6.1% (at 0.2T) were observed for sample X=0.10 and X=0.05, respectively. Hence, these indicated that the extrinsic MR was grain size dependent and was therefore enhanced with a small amount of Sm substitution in La sites.
    Matched MeSH terms: Microscopy, Atomic Force
  10. Taweepreda W
    Sains Malaysiana, 2014;43:241-245.
    Biodegradable polymeric films, obtained from chitosan/natural rubber latex (CS/NRL) blends with different compositions, have been prepared by wetting process. The blends were characterized by dynamic mechanical thermal analysis (DMTA) and found that the CS/NRL blends are thermodynamically incompatible. This is evident from the presence of two glass transitions, corresponding to CS and NRL phases in the blend. The mechanical properties of the CS/NRL blends were improved with increasing the amount of chitosan and after surface treatment with sulphuric acid due to the sulfonate ionic interaction. The dielectric properties was determined using Precision LCR meter in the frequency range 75 kHz up to 30 MHz. After CS/NRL surface treatment with sulphuric acid at high content of chitosan showed the highest dielectric constant. The surface properties of the CS/NRL blend films before and after surface treatment were confirmed by atomic force microscopy (AFM), respectively.
    Matched MeSH terms: Microscopy, Atomic Force
  11. Hutagalung SD, Darsono T, Khatijah A. Yaacob
    Atomic force microscopes (AFM) as one of the scanning probe microscopy (spm) modes have become useful tools, not only for observing surface morphology and nanostructure topography but also for fabrication of various nanostructures itself. In this work, silicon oxide (SiOx) patterns were formed on Si(100) surface by means of AFM anodization, where a non-contact mode used to oxidize Si wafer at the nanoscale size. The oxide patterns could serve as masks for the chemical etching of Si surface in alkaline solution in order to create the Si nanodots. A special attention is paid to finding relations between the size of dots and operational parameters as tip bias voltage and tip writing speed Dot arrays with 10 nm high and less than 50 nm in diameter have been successfully fabricated. The ability to control oxidation and scanning speed can be utilized in fabrication of complex nanostructures and make scanning probe lithography (SPL) as a very promising lithographic technique in nanoelectronic devices, nanophotonics and other high-tech areas.
    Matched MeSH terms: Microscopy, Atomic Force
  12. Yam F, Hassan Z, Omar K
    This article reports on the studies of structural and optical properties of nanoporous GaN prepared by Pt assisted electro chemical etching. The porous GaN samples were investigated by scanning electron microscopy (SEM), atomic force microscopy (AFM), and optical transmission (OT). SEM images liang indicated that the density of the pores increased with etching duration, however, the etching duration has no significant effect on the size and shape of the pores. AFM measurements exhibited that the surface roughness was increased with etching durations, however, for long etching duration, the increase of the surface roughness became insignificant. OT measurements revealed that the increase of pore density would lead to the reduction of light transmission. The studies showed that the porosity could influence the structural and optical properties of the GaN.
    Matched MeSH terms: Microscopy, Atomic Force
  13. Ibrahim N, Baqiah H, Abdullah M
    Sains Malaysiana, 2013;42:961-966.
    High quality indium oxide and iron doped indium oxide nanocrystalline films were prepared by the sol-gel method followed by a spin coating technique. The samples were characterized by an X-ray diffractometer, an atomic force microscopy and a UV-vis spectroscopy. All samples had good crystallinity with a preferred orientation in the (222) direction. The crystallite size increased from 12.1 nm for the pure sample to 16.1 nm for the sample with x=0.35 and then decreased to 12.1 nm for the sample with x=0.45. All samples contained nanometer grain sizes with a smooth surface. All films showed a high transmission of over 91% in the wavelength range of 200-800 nm.
    Matched MeSH terms: Microscopy, Atomic Force
  14. TermehYousefi A, Bagheri S, Shahnazar S, Rahman MH, Kadri NA
    Mater Sci Eng C Mater Biol Appl, 2016 Feb;59:636-642.
    PMID: 26652417 DOI: 10.1016/j.msec.2015.10.041
    Carbon nanotubes (CNTs) are potentially ideal tips for atomic force microscopy (AFM) due to the robust mechanical properties, nanoscale diameter and also their ability to be functionalized by chemical and biological components at the tip ends. This contribution develops the idea of using CNTs as an AFM tip in computational analysis of the biological cells. The proposed software was ABAQUS 6.13 CAE/CEL provided by Dassault Systems, which is a powerful finite element (FE) tool to perform the numerical analysis and visualize the interactions between proposed tip and membrane of the cell. Finite element analysis employed for each section and displacement of the nodes located in the contact area was monitored by using an output database (ODB). Mooney-Rivlin hyperelastic model of the cell allows the simulation to obtain a new method for estimating the stiffness and spring constant of the cell. Stress and strain curve indicates the yield stress point which defines as a vertical stress and plan stress. Spring constant of the cell and the local stiffness was measured as well as the applied force of CNT-AFM tip on the contact area of the cell. This reliable integration of CNT-AFM tip process provides a new class of high performance nanoprobes for single biological cell analysis.
    Matched MeSH terms: Microscopy, Atomic Force/instrumentation*; Microscopy, Atomic Force/methods
  15. Daud MN, Zakaria A, Jafari A, Ghazali MS, Abdullah WR, Zainal Z
    Int J Mol Sci, 2012;13(5):5706-14.
    PMID: 22754325 DOI: 10.3390/ijms13055706
    CdTe film was deposited using the electrophoretic deposition technique onto an ITO glass at various bath temperatures. Four batch film compositions were used by mixing 1 to 4 wt% concentration of CdTe powder with 10 mL of a solution of methanol and toluene. X-ray Diffraction analysis showed that the films exhibited polycrystalline nature of zinc-blende structure with the (111) orientation as the most prominent peak. From the Atomic Force Microscopy, the thickness and surface roughness of the CdTe film increased with the increase of CdTe concentration. The optical energy band gap of film decreased with the increase of CdTe concentration, and with the increase of isothermal bath temperature. The film thickness increased with respect to the increase of CdTe concentration and bath temperature, and following, the numerical expression for the film thickness with respect to these two variables has been established.
    Matched MeSH terms: Microscopy, Atomic Force
  16. Samavati A, Othaman Z, Ghoshal SK, Dousti MR, Kadir MR
    Int J Mol Sci, 2012;13(10):12880-9.
    PMID: 23202927 DOI: 10.3390/ijms131012880
    The visible luminescence from Ge nanoparticles and nanocrystallites has generated interest due to the feasibility of tuning band gap by controlling the sizes. Germanium (Ge) quantum dots (QDs) with average diameter ~16 to 8 nm are synthesized by radio frequency magnetron sputtering under different growth conditions. These QDs with narrow size distribution and high density, characterized using atomic force microscopy (AFM) and field emission scanning electron microscopy (FESEM) are obtained under the optimal growth conditions of 400 °C substrate temperature, 100 W radio frequency powers and 10 Sccm Argon flow. The possibility of surface passivation and configuration of these dots are confirmed by elemental energy dispersive X-ray (EDX) analysis. The room temperature strong visible photoluminescence (PL) from such QDs suggests their potential application in optoelectronics. The sample grown at 400 °C in particular, shows three PL peaks at around ~2.95 eV, 3.34 eV and 4.36 eV attributed to the interaction between Ge, GeO(x) manifesting the possibility of the formation of core-shell structures. A red shift of ~0.11 eV in the PL peak is observed with decreasing substrate temperature. We assert that our easy and economic method is suitable for the large-scale production of Ge QDs useful in optoelectronic devices.
    Matched MeSH terms: Microscopy, Atomic Force
  17. Ranjbar N, Mehrali M, Behnia A, Javadi Pordsari A, Mehrali M, Alengaram UJ, et al.
    PLoS One, 2016;11(1):e0147546.
    PMID: 26807825 DOI: 10.1371/journal.pone.0147546
    As a cementitious material, geopolymers show a high quasi-brittle behavior and a relatively low fracture energy. To overcome such a weakness, incorporation of fibers to a brittle matrix is a well-known technique to enhance the flexural properties. This study comprehensively evaluates the short and long term impacts of different volume percentages of polypropylene fiber (PPF) reinforcement on fly ash based geopolymer composites. Different characteristics of the composite were compared at fresh state by flow measurement and hardened state by variation of shrinkage over time to assess the response of composites under flexural and compressive load conditions. The fiber-matrix interface, fiber surface and toughening mechanisms were assessed using field emission scan electron microscopy (FESEM) and atomic force microscopy (AFM). The results show that incorporation of PPF up to 3 wt % into the geopolymer paste reduces the shrinkage and enhances the energy absorption of the composites. While, it might reduce the ultimate flexural and compressive strength of the material depending on fiber content.
    Matched MeSH terms: Microscopy, Atomic Force
  18. Haafiz MK, Hassan A, Khalil HP, Fazita MR, Islam MS, Inuwa IM, et al.
    Int J Biol Macromol, 2016 Apr;85:370-8.
    PMID: 26772914 DOI: 10.1016/j.ijbiomac.2016.01.004
    In this work, polylactic acid (PLA) reinforced cellulose nanowhiskers (CNW) were prepared through solution casting technique. The CNW was first isolated from oil palm empty fruit bunch microcrystalline cellulose (OPEFB-MCC) by using 64% H2SO4 and was designated as CNW-S. The optical microscopy revealed that the large particle of OPEFB-MCC has been broken down by the hydrolysis treatment. The atomic force microscopy confirmed that the CNW-S obtained is in nanoscale dimension and appeared in individual rod-like character. The produced CNW-S was then incorporated with PLA at 1, 3, and 5 parts per hundred (phr) resins for the PLA-CNW-S nanocomposite production. The synthesized nanocomposites were then characterized by a mean of tensile properties and thermal stability. Interestingly to note that incorporating of 3 phr/CNW-S in PLA improved the tensile strength by 61%. Also, CNW-S loading showed a positive impact on the Young's modulus of PLA. The elongation at break (Eb) of nanocomposites, however, decreased with the addition of CNW-S. Field emission scanning electron microscopy and transmission electron microscopy revealed that the CNW-S dispersed well in PLA at lower filler loading before it started to agglomerate at higher CNW-S loading (5phr). The DSC analysis of the nanocomposites obtained showed that Tg,Tcc and Tm values of PLA were improved with CNW-S loading. The TGA analysis however, revealed that incopreated CNW-S in PLA effect the thermal stability (T10,T50 and Tmax) of nanocomposite, where it decrease linearly with CNW-S loading.
    Matched MeSH terms: Microscopy, Atomic Force
  19. Waje, Samaila Bawa, Noorhana Yahya, Irmawati Ramli
    Monoclinic bismuth oxide (α-Bi2O3) nanoparticles were prepared via precipitation method and
    irradiated with a pulsed laser forming thin films. Their phase and surface morphological properties
    were investigated using x-ray diffraction (XRD), atomic force microscopy (AFM), scanning electron
    microscopy (SEM) and high resolution transmission electron microscopy (HR-TEM). The XRD
    analysis shows the phase transformation to a partially crystalline tetragonal phase β-Bi2O3 thin film.
    The SEM micrograph of the nanoparticles, with an average crystal size of 72 nm, was seen to form
    a thin film with a peculiar structure, coined as “cotton-like”, is attributed to the high surface energy
    absorbed by the nanoparticles during ablation. The HR-TEM micrograph shows the particulate with
    a clearly defined interlayer spacing.
    Matched MeSH terms: Microscopy, Atomic Force
  20. Azmer MI, Aziz F, Ahmad Z, Raza E, Najeeb MA, Fatima N, et al.
    Talanta, 2017 Nov 01;174:279-284.
    PMID: 28738579 DOI: 10.1016/j.talanta.2017.06.016
    This research work demonstrates compositional engineering of an organic-inorganic hybrid nano-composites for modifying absolute threshold of humidity sensors. Vanadyl-2,9,16,23-tetraphenoxy-29H,31H-phthalocyanine (VOPcPhO), an organic semiconductor, doped with Titanium-dioxide nanoparticles (TiO2NPs) has been employed to fabricate humidity sensors. The morphology of the VOPcPhO:TiO2nano-composite films has been analyzed by atomic force microscopy (AFM) and field emission scanning electron microscopy (FESEM). The sensors have been examined over a wide range of relative humidity i.e. 20-99% RH. The sensor with TiO2(90nm) shows reduced sensitivity-threshold and improved linearity. The VOPcPhO:TiO2(90nm) nano-composite film is comprised of uniformly distributed voids which makes the surface more favorable for adsorption of moisture content from environment. The VOPcPhO:TiO2nano-composite based sensor demonstrates remarkable improvement in the sensing parameter when equated with VOPcPhO sensors.
    Matched MeSH terms: Microscopy, Atomic Force
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