In this study, the climate change, tsunami and biodiversity for 336 km coastline endangered at the South China Sea was investigated with the review for the past, current and prediction models for the future. The hydraulic study of the coastal area was conducted using a well-established 2D numerical model suite Delft3D. The study revealed that the generated earthquakes at the convergence zone in the last century are small (Mw7.3), the possibility that a megathrust earthquake event in the SCS basin occurs in the future. The study area comprises a narrow strip of vegetation notably dominated by Casuarina equisetifolia with other coastal plants. Mangrove forests are found along the coastline and estuaries that are overlaid with marine alluvial soils. The current paper is the first comprehensive study of the South China Sea, and the findings increase the awareness among the public to understand the risk associated with environmental pollution.