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  1. Ahmed H, Hameed MA, Javed N, Yousra M, Niaz M, Baloch B, et al.
    Environ Geochem Health, 2026 Aug 19;48(13).
    PMID: 42618830 DOI: 10.1007/s10653-026-03435-x
    Nitrogen (N) deficiency and inefficient fertilizer use pose serious challenges to sustainable citrus production in Pakistan, particularly in major citrus-growing regions such as Sargodha. This study integrated pedometric mapping, geostatistics, and satellite remote sensing to diagnose the nitrogen status of citrus orchards in District Sargodha, Pakistan. Geo-referenced soil samples were collected from 90 orchard sites at three depths (0-20, 20-40, and 40-60 cm) and analyzed for plant-available nitrate-N (NO3--N), while diagnostic leaf samples were analyzed for total nitrogen content. Spatial variability was assessed using semivariogram modeling and ordinary kriging to generate digital nutrient distribution maps. Landsat-8 OLI imagery was used to compute 43 vegetation indices (VIs) involving two and three spectral bands, and their relationships with soil NO3--N and foliage N were evaluated through correlation and regression analyses. Results revealed widespread deficiency of plant-available NO₃⁻-N in soils and total N in foliage across the study area. Surface soil NO3--N showed significant positive relationships with deeper soil layers, indicating that surface soil analysis can reliably predict N availability within the 0-60 cm soil profile. Geostatistical analysis indicated moderate to strong spatial dependence for soil NO3--N and strong spatial dependence for foliage N content. Several vegetation indices, particularly Ratio Vegetation Indices (RVI-1, RVI-2, RVI-3), NDVI-based indices, and soil-adjusted indices, exhibited strong correlations with both soil NO3--N and foliage N, explaining up to 70% of variability. The findings demonstrate the strong potential of combining pedometric mapping and Landsat-based remote sensing for regional-scale diagnosis of nitrogen status in citrus orchards, providing a foundation for site-specific and precision nitrogen management strategies.
  2. Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, Abdellatif M, Abdoli A, Abel S, et al.
    Autophagy, 2021 Jan;17(1):1-382.
    PMID: 33634751 DOI: 10.1080/15548627.2020.1797280
    In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field.
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