Displaying publications 21 - 22 of 22 in total

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  1. Chu C, Liu D, Wang D, Hu S, Zhang Y
    Int J Immunopathol Pharmacol, 2023;37:3946320231211795.
    PMID: 37942552 DOI: 10.1177/03946320231211795
    BACKGROUND: The TP53 gene is estimated to be mutated in over 50% of tumors, with the majority of tumors exhibiting abnormal TP53 signaling pathways. However, the exploration of TP53 mutation-related LncRNAs in Hepatocellular carcinoma (HCC) remains incomplete. This study aims to identify such LncRNAs and enhance the prognostic accuracy for Hepatoma patients.

    MATERIAL AND METHODS: Differential gene expression was identified using the "limma" package in R. Prognosis-related LncRNAs were identified via univariate Cox regression analysis, while a prognostic model was crafted using multivariate Cox regression analysis. Survival analysis was conducted using Kaplan-Meier curves. The precision of the prognostic model was assessed through ROC analysis. Subsequently, the Tumor Immune Dysfunction and Exclusion (TIDE) algorithm were executed on the TCGA dataset via the TIDE database. Fractions of 24 types of immune cell infiltration were obtained from NCI Cancer Research Data Commons using deconvolution techniques. The protein expression levels encoded by specific genes were obtained through the TPCA database.

    RESULTS: In this research, we have identified 85 LncRNAs associated with TP53 mutations and developed a corresponding signature referred to as TP53MLncSig. Kaplan-Meier analysis revealed a lower 3-year survival rate in high-risk patients (46.9%) compared to low-risk patients (74.2%). The accuracy of the prognostic TP53MLncSig was further evaluated by calculating the area under the ROC curve. The analysis yielded a 5-year ROC score of 0.793, confirming its effectiveness. Furthermore, a higher score for TP53MLncSig was found to be associated with an increased response rate to immune checkpoint blocker (ICB) therapy (p = .005). Patients possessing high-risk classification exhibited lower levels of P53 protein expression and higher levels of genomic instability.

    CONCLUSION: The present study aimed to identify and validate LncRNAs associated with TP53 mutations. We constructed a prognostic model that can predict chemosensitivity and response to ICB therapy in HCC patients. This novel approach sheds light on the role of LncRNAs in TP53 mutation and provides valuable resources for analyzing patient prognosis and treatment selection.

  2. Ouyang D, Liu T, Astimar AA, Lau HLN, Teh SS, Nursyairah J, et al.
    Bioresour Technol, 2023 Jan 13;372:128626.
    PMID: 36642202 DOI: 10.1016/j.biortech.2023.128626
    A novel process for simultaneous production of furfural and pretreatment of oil palm empty fruit bunch (EFB) by dilute acid pre-hydrolysis was developed based on non-isothermal kinetic modeling. Mass transfer analysis suggested that the internal diffusion could be neglected as diffusion time of sulfuric acid in EFB particles was significantly shorter than the pre-hydrolysis period, whereas the heating stage could not be neglected due to a significant part of xylan was solubilized at the stage. A strategy for increasing furfural yield was developed by intermittent discharging of steam, resulting in 71.4 % furfural yield. The pretreated solids showed good enzymatic digestibility. 136.3 g/L glucose corresponding to 81.6 % yield was obtained by high-solid loading hydrolysis. 95.4 g furfural and 212 g glucose could be obtained from 1 kg dry EFB. Therefore, non-isothermal effects on polysaccharide hydrolysis and pentose decomposition should be considered carefully for an efficient process design of EFB biorefining.
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