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Displaying publications 41 - 46 of 46 in total

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Mapping the influence of hydrocarbons mixture on molecular mechanisms, involved in breast and lung neoplasms: in silico toxicogenomic data-mining

Abu-Bakar A, Ismail M, Zulkifli MZI, Zaini NAS, Shukor NIA, Harun S, et al.

Genes Environ, 2024 Jul 09;46(1):15.
PMID: 38982523 DOI: 10.1186/s41021-024-00310-y

BACKGROUND: Exposure to chemical mixtures inherent in air pollution, has been shown to be associated with the risk of breast and lung cancers. However, studies on the molecular mechanisms of exposure to a mixture of these pollutants, such as hydrocarbons, in the development of breast and lung cancers are scarce. We utilized in silico toxicogenomic analysis to elucidate the molecular pathways linked to both cancers that are influenced by exposure to a mixture of selected hydrocarbons. The Comparative Toxicogenomics Database and Cytoscape software were used for data mining and visualization.
RESULTS: Twenty-five hydrocarbons, common in air pollution with carcinogenicity classification of 1 A/B or 2 (known/presumed or suspected human carcinogen), were divided into three groups: alkanes and alkenes, halogenated hydrocarbons, and polyaromatic hydrocarbons. The in silico data-mining revealed 87 and 44 genes commonly interacted with most of the investigated hydrocarbons are linked to breast and lung cancer, respectively. The dominant interactions among the common genes are co-expression, physical interaction, genetic interaction, co-localization, and interaction in shared protein domains. Among these genes, only 16 are common in the development of both cancers. Benzo(a)pyrene and tetrachlorodibenzodioxin interacted with all 16 genes. The molecular pathways potentially affected by the investigated hydrocarbons include aryl hydrocarbon receptor, chemical carcinogenesis, ferroptosis, fluid shear stress and atherosclerosis, interleukin 17 signaling pathway, lipid and atherosclerosis, NRF2 pathway, and oxidative stress response.
CONCLUSIONS: Within the inherent limitations of in silico toxicogenomics tools, we elucidated the molecular pathways associated with breast and lung cancer development potentially affected by hydrocarbons mixture. Our findings indicate adaptive responses to oxidative stress and inflammatory damages are instrumental in the development of both cancers. Additionally, ferroptosis-a non-apoptotic programmed cell death driven by lipid peroxidation and iron homeostasis-was identified as a new player in these responses. Finally, AHR potential involvement in modulating IL-8, a critical gene that mediates breast cancer invasion and metastasis to the lungs, was also highlighted. A deeper understanding of the interplay between genes associated with these pathways, and other survival signaling pathways identified in this study, will provide invaluable knowledge in assessing the risk of inhalation exposure to hydrocarbons mixture. The findings offer insights into future in vivo and in vitro laboratory investigations that focus on inhalation exposure to the hydrocarbons mixture.
Multiplex sequencing of SARS-Cov-2 genome directly from clinical samples using the Ion Personal Genome Machine (PGM)

Tan KK, Tiong V, Tan JY, Wong JE, Teoh BT, Abd-Jamil J, et al.

Trop Biomed, 2021 Sep 01;38(3):283-288.
PMID: 34362871 DOI: 10.47665/tb.38.3.069

Various methods have been developed for rapid and high throughput full genome sequencing of SARS-CoV-2. Here, we described a protocol for targeted multiplex full genome sequencing of SARS-CoV-2 genomic RNA directly extracted from human nasopharyngeal swabs using the Ion Personal Genome Machine (PGM). This protocol involves concomitant amplification of 237 gene fragments encompassing the SARS-CoV-2 genome to increase the abundance and yield of viral specific sequencing reads. Five complete and one near-complete genome sequences of SARS-CoV-2 were generated with a single Ion PGM sequencing run. The sequence coverage analysis revealed two amplicons (positions 13 751-13 965 and 23 941-24 106), which consistently gave low sequencing read coverage in all isolates except 4Apr20-64- Hu. We analyzed the potential primer binding sites within these low covered regions and noted that the 4Apr20-64-Hu possess C at positions 13 730 and 23 929, whereas the other isolates possess T at these positions. The genome nucleotide variations observed suggest that the naturally occurring variations present in the actively circulating SARS-CoV-2 strains affected the performance of the target enrichment panel of the Ion AmpliSeq™ SARS CoV 2 Research Panel. The possible impact of other genome nucleotide variations warrants further investigation, and an improved version of the Ion AmpliSeq™ SARS CoV 2 Research Panel, hence, should be considered.
Fulltext The Effect of Graphene Oxide and SEBS-g-MAH Compatibilizer on Mechanical and Thermal Properties of Acrylonitrile-Butadiene-Styrene/Talc Composite

Joynal Abedin FN, Hamid HA, Alkarkhi AFM, Amr SSA, Khalil NA, Ahmad Yahaya AN, et al.

Polymers (Basel), 2021 Sep 19;13(18).
PMID: 34578081 DOI: 10.3390/polym13183180

In this study, acrylonitrile butadiene styrene (ABS)/talc/graphene oxide/SEBS-g-MAH (ABS/Talc/GO/SEBS-g-MAH) and acrylonitrile butadiene styrene/graphene oxide/SEBS-g-MAH (ABS/GO/SEBS-g-MAH) composites were isolated with varying graphene oxide (0.5 to 2.0 phr) as a filler and SEBS-g-MAH as a compatibilizer (4 to 8 phr), with an ABS:talc ratio of 90:10 by percentage. The influences of graphene oxide and SEBS-g-MAH loading in ABS/talc composites were determined on the mechanical and thermal properties of the composites. It was found that the incorporation of talc reduces the stiffness of composites. The analyses of mechanical and thermal properties of composites revealed that the inclusion of graphene oxide as a filler and SEBS-g-MAH as a compatibilizer in the ABS polymer matrix significantly improved the mechanical and thermal properties. ABS/talc was prepared through melt mixing to study the fusion characteristic. The mechanical properties showed an increase of 30%, 15%, and 90% in tensile strength (TS), flexural strength (FS), and flexural modulus (FM), respectively. The impact strength (IS) resulted in comparable properties to ABS, and it was better than the ABS/talc composite due to the influence of talc in the composite that stiffens and reduces the extensibility of plastic. The incorporation of GO and SEBS-g-MA also shows a relatively higher thermal stability in both composites with and without talc. The finding of the present study reveals that the graphene oxide and SEBS-g-MAH could be utilized as a filler and a compatibilizer in ABS/talc composites to enhance the thermo-mechanical stability because of the superior interfacial adhesion between the matrix and filler.
Fulltext Synthesis and Characterization of a Novel Nanosized Polyaniline

Banjar MF, Joynal Abedin FN, Fizal ANS, Muhamad Sarih N, Hossain MS, Osman H, et al.

Polymers (Basel), 2023 Nov 29;15(23).
PMID: 38232004 DOI: 10.3390/polym15234565

Polyaniline (PANI) is a conductive polymer easily converted into a conducting state. However, its limited mechanical properties have generated interest in fabricating PANI composites with other polymeric materials. In this study, a PANI-prevulcanized latex composite film was synthesized and fabricated in two phases following chronological steps. The first phase determined the following optimum parameters for synthesizing nanosized PANI, which were as follows: an initial molar ratio of 1, a stirring speed of 600 rpm, a synthesis temperature of 25 °C, purification via filtration, and washing using dopant acid, acetone, and distilled water. The use of a nonionic surfactant, Triton X-100, at 0.1% concentration favored PANI formation in a smaller particle size of approximately 600 nm and good dispersibility over seven days of observation compared to the use of anionic sodium dodecyl sulfate. Ultraviolet-visible spectroscopy (UV-Vis) showed that the PANI synthesized using a surfactant was in the emeraldine base form, as the washing process tends to decrease the doping level in the PANI backbone. Our scanning electron microscopy analysis showed that the optimized synthesis parameters produced colloidal PANI with an average particle size of 695 nm. This higher aspect ratio explained the higher conductivity of nanosized PANI compared to micron-sized PANI. Following the chronological steps to determine the optimal parameters produced a nanosized PANI powder. The nanosized PANI had higher conductivity than the micron-sized PANI because of its higher aspect ratio. When PANI is synthesized in smaller particle sizes, it has higher conductivity. Atomic force microscopy analysis showed that the current flow is higher across a 5 µm2 scanned area of nanosized PANI because it has a larger surface area. Thus, more sites for the current to flow through were present on the nanosized PANI particles.
The thermoluminescence glow curve and the deconvoluted glow peak characteristics of erbium doped silica fiber exposed to 70-130 kVp x-rays

Alawiah A, Bauk S, Marashdeh MW, Nazura MZ, Abdul-Rashid HA, Yusoff Z, et al.

Appl Radiat Isot, 2015 Oct;104:197-202.
PMID: 26188687 DOI: 10.1016/j.apradiso.2015.07.011

In regard to thermoluminescence (TL) applied to dosimetry, in recent times a number of researchers have explored the role of optical fibers for radiation detection and measurement. Many of the studies have focused on the specific dopant concentration, the type of dopant and the fiber core diameter, all key dependencies in producing significant increase in the sensitivity of such fibers. At doses of less than 1 Gy none of these investigations have addressed the relationship between dose response and TL glow peak behavior of erbium (Er)-doped silica cylindrical fibers (CF). For x-rays obtained at accelerating potentials from 70 to 130 kVp, delivering doses of between 0.1 and 0.7 Gy, present study explores the issue of dose response, special attention being paid to determination of the kinetic parameters and dosimetric peak properties of Er-doped CF. The effect of dose response on the kinetic parameters of the glow peak has been compared against other fiber types, revealing previously misunderstood connections between kinetic parameters and radiation dose. Within the investigated dose range there was an absence of supralinearity of response of the Er-doped silica CF, instead sub-linear response being observed. Detailed examination of glow peak response and kinetic parameters has thus been shown to shed new light of the rarely acknowledged issue of the limitation of TL kinetic model and sub-linear dose response of Er-doped silica CF.
A review of the treatment technologies for hexavalent chromium contaminated water

Ramli NN, Kurniawan SB, Ighalo JO, Mohd Said NS, Marsidi N, Buhari J, et al.

Biometals, 2023 May 20.
PMID: 37209220 DOI: 10.1007/s10534-023-00512-x

The toxicity of hexavalent chromium (Cr(VI)) present in the environment has exceeded the current limits or standards and thus may lead to biotic and abiotic catastrophes. Accordingly, several treatments, including chemical, biological, and physical approaches, are being used to reduce Cr(VI) waste in the surrounding environment. This study compares the Cr(VI) treatment approaches from several areas of science and their competence in Cr(VI) removal. As an effective combination of physical and chemical approaches, the coagulation-flocculation technique removes more than 98% of Cr(VI) in less than 30 min. Most membrane filtering approaches can remove up to 90% of Cr(VI). Biological approaches that involve the use of plants, fungi, and bacteria also successfully eliminate Cr(VI) but are difficult to scale up. Each of these approaches has its benefits and drawbacks, and their applicability is determined by the research aims. These approaches are also sustainable and environmentally benign, thus limiting their effects on the ecosystem.