Results of a biodiversity study of Antarctic microfungi from ornithogenic soils are presented in this paper. A wide range of soil habitats within and adjacent to active and abandoned penguin rookeries were sampled in order to examine relationships between environmental factors and the biodiversity of soil microfungi. Soil samples were collected from two contrasting Antarctic locations: (1) Beaufort Island (Ross Sea, Continental Antarctica), which is largely ice- and snow-covered, isolated, difficult to access and infrequently visited, and (2) Barrientos Island (maritime Antarctica) which is mostly ice-free during summer and is often visited by scientists and tourists. Soil sampling at Beaufort and Barrientos Islands was completed during the austral summer seasons of 2004/05 and 2006/07, respectively. Warcup’s soil method was used for fungi cultivation. A total of 27 fungal taxa were isolated from the two study sites, consisting of 11 ascomycetes, 13 hyphomycetes
and three yeasts. Only three taxa — Geomyces sp., a pink and a white yeast — occurred on both sites. The isolated fungi were classified according to their thermal characteristics in culture, with seven psychrophilic, 10 psychrotrophic and 10 mesophilic fungi being isolated. Thelebolus microspores, Thelebolus sp., Geomyces sp. and Antarctomyces sp., were the most frequently isolated fungi. A total of 10 taxa were isolated from the 20 soil samples from Beaufort Island, consisting of five psychrophilic, four psychrotrophic and one mesophilic fungi. Thelebolus microsporus, Thelebolus sp., Asco BI8 and Phoma sp. were the most frequently obtained fungi
(20%–27% of isolates). A total of 22 fungal taxa were isolated from 23 soil samples from Barrientos Island, consisting of four psychrophilic, six psychrotrophic and 12 mesophilic fungi. Geomyces sp. and Antarctomyces sp. were the most frequently isolated taxa. Thus, the fungal diversity of Beaufort Island was dominated by Ascomycetes while that of Barrientos Island was dominated by hyphomycetes.
Katabatic winds dramatically affect the polar climate. Their activity depends on density of air and temperature in the source region. This paper presents for first time an analysis of the precipitable water vapour (PWV) variability and its relation to a katabatic event at Scott Base station, Antarctica. A significant effect in their characteristics toward calculation of a reliable user accuracy in GPS applications is addressed. Our investigations using the data between 21st and 30th of November 2002 showed that the PWV profile exhibited an irregular pattern with a maximum value of 7.38 mm (~ 6 mm on average), and was more strongly influenced by relative humidity than by wind speed activity. The dominant wind flow during this period was from the North-Northeast (blowing from the Ross Sea) with a median speed of 4.96 ms–1. The PWV was high when the temperature was between –15ºC and –11ºC. During the dates identified as a katabatic event between 21:30 UT of 28th November and 18:40 UT on 29th November, the wind blew from the Southeast-South direction (from the Ross Ice Shelf) with a maximum speed of 10.92 ms–1. The PWV increased ~1.4 mm (23%) from the mean value, indicating severe wind during this event which had pronounced effect on GPS observations.
There are relatively little data on bacteria with antimicrobial activities from Antarctic, especially from the South Shetland Islands when compared to the other parts of the world. Hence, this project was set to isolate and characterize bacteria that produce anti-microbial compounds from Greenwich Island (one of the South Shetland Islands), Antarctica. A total of 356 strains of bacteria were isolated from Greenwich Island. They were screened for antimicrobial activities against 13 Gram-negative and one Gram-positive indicator food-borne pathogens. Two out of the 356 Antarctic bacterial strains exhibited an antagonistic effect on the indicator strains, Escherichia coli, Salmonella spp., Klebsiella pneumoniae, Enterobacter cloacae, Vibrio parahaemolyticus and Bacillus cereus. The two Antarctic bacterial strains were designated as SS157 and SR13. Biochemical and 16S rDNA analysis indicated that the strain SS157 was closely related to Pseudomonas congelans while the strain SR13 was closely related to Pseudomonas tremae. The anti-microbial compounds produced by the two Antarctic bacteria were not sensitive to temperature and were not degraded by trypsin or pronase indicating that they were likely to be chemical compounds or antibiotics. Antimicrobial compounds from strains SS157 and SR13 were broad spectrum, and targeted both Gram-positive and negative pathogens.
The effects of topical application of Orthosiphon stamineus leaf extract on the rate of wound healing and histology of the healed wound were assessed. Four groups of adult male Sprague Dawley rats were experimentally wounded in the posterior neck area. A thin layer of blank placebo was applied topically to wounds of Group 1 rats. Wounds of experimental animals (Group 2 and 3) were dressed with placebo containing 5% and 10% O. stamineus extract, respectively. A thin layer of Intrasite gel® was applied topically to wounds of Group 4 animals as reference. Macroscopically, wounds dressed with placebo containing 5% (healed on day 14.50 ± 0.43) and 10% (healed on day 13.83 ± 0.21) O. stamineus extract each or Intrasite gel® (healed on day 13.13 ± 0.42) significantly accelerated the rate of wound healing compared to wounds dressed with blank placebo. Histological analysis of healed wounds confirmed the results. Wounds dressed with placebo containing 5%, 10% O.stamineus or Intrasite gel® showed markedly less scar width at wound enclosure and granulating tissue contained markedly more collagen, proliferating fibroblast with angiogenesis, and no inflammatory cells compared to wounds dressed with blank placebo. In conclusion, placebo containing 5% or 10% O. stamineus on extract-dressed wounds significantly accelerated the rate of wound healing in rats.
This paper introduces a method for modification of the formula of the fractal box counting dimension. The method is based on the utilization of the probability distribution formula in the fractal box count. The purpose of this method is to use it for the discrimination of oil spill areas from the surrounding features e.g. sea surface and look-alikes in RADARSAT-1 SAR data. The result showed that the new formula of the fractal box counting dimension was able to discriminate between oil spills and look-alike areas. The low wind area had the highest fractal dimension peak of 2.9, as compared to the oil slick and the surrounding rough sea. The maximum error standard deviation of the low wind area was 0.68 which performed with a 2.9 fractal dimension value.
The Nipah virus was first discovered in 1999, following a severe outbreak of viral encephalitis among pig farm workers in Malaysia. The virus was thought to have spread from Pteropus bats to pigs, then from infected pigs to humans by close contact. Mortality of the disease was high at about 40%. The main necropsy finding was disseminated microinfarction associated with vasculitis and direct neuronal involvement. Relapsed encephalitis was seen in approximately 10% of those who survived the initial illness. Since its first recorded emergence in peninsular Malaysia, 10 outbreaks of Nipah virus encephalitis have been reported in Bangladesh and West Bengal in India. The outbreaks occurred from January to May, with Pteropus giganteus as the reservoir of the virus. In Bangladesh, evidence indicated that the virus transmitted directly from bats to human, with human to human transmission as an important mode of spread. The mortality of the illness was higher in Bangladesh which stood at around 70%. This was likely to be due to genetic variation of the virus.
A 2.4 GHz variable-gain low noise amplifier (VGLNA) intended for use in a Wide-band Code Division
Multiple Access receiver was designed in 0.18 um CMOS process for low voltage and low power applications. Rivaling classical designs using voltage mode approach, this design used the current mode approach, utilizing the current mirror principle to obtain a controllable gain range from 8.26 dB to 16.95 dB with good input and output return losses. By varying the current through the widths of transistors and a bias resistor, the VGLNA was capable of exhibiting 8 dB gain tuning range without degrading the noise figure. Therefore, higher gain was possible at lower current and thus at lower power consumption. Total power consumption simulated was 4.63 mW from a 1 V supply and this gave a gain/power quotient of 3.66 dB/mW. Comparing this with available published data, it was observed that this work demonstrated a good gain tuning range and the lowest noise figure with such power consumption.
Fractional factorial design was utilized to evaluate the effect of combinations of nitric acid, hydrogen peroxide, hydrochloric acid and water for microwave digestion of fish muscle. Upon digestion, copper, iron and zinc were determined by flame atomic absorption spectroscopy. H2O2 and HCl volumes were found to be the most significant parameters which resulted in good metal recoveries. This is especially so for the effect of HCl on Fe recovery. The results indicated that the combination of 4 mL 65% HNO3, 2 mL 30% H2O2 and 2 mL 30% HCl gave the most satisfactory percentage recovery. There was good agreement between measured and certified values for all metals with respect to the DORM-3 fish protein.
Computational chemistry is a discipline that concerns the computing of physical and chemical properties of atoms and molecules using the fundamentals of quantum mechanics. The expense of computational chemistry calculations is significant and limited by available computational capabilities. The use of high-performance computing clusters alleviate such calculations. However, as high-performance computing (HPC) clusters have always required a balance between four major factors: raw computing power, memory size, I/O capacity, and communication capacity. In this paper, we present the results of standard HPC benchmarks in order to help assess the performance characteristics of the various hardware and software components of a home-built commodity-class Linux cluster. We optimized a range of TCP/MPICH parameters and achieved a maximum MPICH bandwidth of 666 Mbps. The bandwidth and latency of GA put/get operations were better than the corresponding MPICH send/receive ones. We also examined the NFS, PVFS2, and Lustre parallel filesystems and Lustre provided the best read/write bandwidths with more than 90% of those of the local filesystem.
Responses were recorded from normal healthy subjects and age-related macular degeneration (AMD) patients and evaluated, using a new variant of mfVEP. Subjects information was recorded using 64 EEG channels with a computer-based acquisition system. The stimulus layout was a 84 region corticallyscaled dartboard comprising 12 sectors and seven concentric rings subtending a diameter of 23º, presented dichoptically at 60 Hz. Data from the control and AMD patients were statistically compared when fitted concurrently into the multiple regression analysis. The Pattern-pulse mfVEP technique could distinguish between normal eyes and those with a definite diagnosis of dry and wet AMD when responses from the macula were considered.
Recent studies by the United Nations University - Institute of Advanced Studies (UNU-IAS) demonstrate that bioprospecting is taking place in Antarctica and the Southern Ocean and that related commercial applications were being marketed. The bioprospectors’ interest in Antarctica stems from two reasons. First, the lack of knowledge surrounding Antarctic biota provides opportunities to discover novel organisms of potential use to biotechnology. Second, Antarctica’s environmental extremes, such as cold temperatures, extreme aridity and salinity present conditions in which biota have evolved unique characteristics for survival (UNU-IAS 2003). Thus bioprospecting opportunities include, inter alia, the discovery of novel bioactives in species found in cold and dry lithic habitat, novel pigments found in hyper-saline lakes and antifreezes in sea-lakes (Cheng & Cheng 1999).
3-Nitro-2-phenoxypyridine and 3-nitro-2-(4-methyl)phenoxypyridine were obtained when 2-chloro-3-nitropyridine was treated with phenol and p-cresol, respectively. Fluorescence studies were carried out in various solvents, in capped and uncapped conditions and for differing concentrations. Both 3-nitro-2-phenoxypyridine and 3-nitro-2-(4-methyl)phenoxypyridine were fluorescent compounds but 3-Nitro-2-(4-methyl)phenoxypyridine was more fluorescent than 3-nitro-2-phenoxypyridine in all the solvents used. The fluorescence intensity decreased with concentration and time.
The genus Streptomonospora is a group of extremely halophilic filamentous actinomycetes that form a distinct branch in the 16S rRNA gene phylogenetic tree adjacent to the genera Nocardiopsis and Thermobifida, family Norcadiopsaceae. To date, genus Streptomonospora only contain two validly described species which are Streptomonospora salina and Streptomonospora alba. During a biodiversity study on halophilic filamentous actinomycetes from 18 co-ordinates in Barrientos Island, Antarctic, numerous actinomycetes strains were isolated. To identify whether these isolates were members of the genus Streptomonospora, a genus specific primer that allow the rapid detection of the genus Streptomonospora by means of PCR amplification was used. Furthermore molecular cloning was performed to make identical and multiple copies of the target gene. In addition, morphological characteristic identification was performed to validate isolates with positive amplification during PCR.
Chlorella is one of the common microalgae found in a wide range of habitats, including Antarctica. Chlorella UMACC 234 is an interesting isolate in the collection of Antarctic microalgae in the University of Malaya algae culture collection (UMACC) as it grows well at temperatures much higher than the ambience. The alga was isolated from snow samples collected from Casey, Antarctica. This study investigates the influence of nitrogen source on the growth, biochemical composition and fatty acid profile of Chlorella UMACC 234. The cultures were grown in Bold’s Basal Medium with 3.0 mM NaNO3, NH4Cl or urea. The cultures grown on NaNO3 attained the highest specific growth rate (μ = 0.43 day–1) while the specific growth rates of those grown on NH4Cl and urea were not significantly different (p > 0.05). The urea-grown cells produced the highest amounts of lipids (25.7% dry weight) and proteins (52.5% dry weight) compared to those grown on other nitrogen sources. The cell numbers attained by the cultures grown at NaNO3 levels between 0.3 and 3.0 mM were similar but decreased markedly at 9.0 mM NaNO3. The fatty acids of Chlorella UMACC 234 were dominated by saturated fatty acids, especially 16:0 and 18:0. The percentage of polyunsaturated fatty acids was very low, especially in cells grown on urea (0.9% total fatty acids). Characterisation of the growth and biochemical composition of this Antarctic Chlorella is important to our studies on the relationship of Chorella isolates from tropical, temperate and polar regions, especially in terms of phylogeny and stress adaptation.
Surface coverage and some properties soil chemicals were assessed at the Punta Fort William, Greenwich Island during the summer from 1–11 February 2008. Twenty sampling points were established along two strip transects covering a total area of 160 m2. Punta Fort William was basically barren. Rocks, stones and pebbles covered 89.4% of the Punta Fort William. The diversity of vegetation in Punta Fort William was relatively low as compared to other South Shetland Islands. Mosses predominated the area and covered 9.1% of the total surface. Colobantus quitensis was the only vascular plant found at the Punta Fort William. It covered 0.5% of the total surface area. Lichens contributed 0.2% of the surface coverage. Although lichen coverage was low, its frequency of occurrence was among the highest. Total organic carbon (TOC) and total nitrogen (TN) in the study area ranged from 1 g to 39 g C kg–1 and 12 μg to 3892 μg N kg–1, respectively. The level of TOC and TN were comparable to those reported in other maritime locations in Antarctic. Higher levels of TOC and TN were detected in the areas with intensive biological activities. Hydrocarbon concentration was very low in this area and the sources of hydrocarbons were both natural and anthropogenic. The natural hydrocarbons source was mostly biogenic while the petrogenic hydrocarbons input was anthropogenic.
Three techniques to retrieve information on sea ice thickness from both active and passive radar backscatter data are presented. The first inversion model is a combination of the radiative transfer theory with dense medium phase and amplitude correction theory (DMPACT), and the Levenberg-Marquardt optimization algorithm. The radiative transfer theory was applied as the forward model to generate radar backscatter data, while the DMPACT was included to account for the close spacing effect among the scatterers within the medium. The Levenberg-Marquardt optimization algorithm was then applied to reduce the error between the model generated radar backscatter data and the measured radar backscatter data from satellite images so that the sea ice thickness could be estimated. The second method presented was the neural network inversion method which utilizes a chain of neurons with variable weights. Once the network was fully operational it would be possible to predict the sea ice thickness, provided sufficient training data are given. The last method was the genetic algorithm which is a search technique used in order to predict the approximate sea ice thickness from the measured data. Data from ground truth measurements carried out in Ross Island, Antarctica, together with radar backscatter data extracted from purchased satellite images were used as input to verify the models. All three models were tested and successfully predicted sea ice thickness from actual terrain using the ground truth measurement data, with several constraints and assumptions placed to avoid problems during the retrieval process. While the models still have their own limitations, the potential use of the models for actual sea ice thickness retrieval was confirmed.
In this project, a Geographic Information System (GIS) was used to collect and compile various field data in the Pedro Vicente Maldonado Ecuadorian Scientific Station Antarctica Base area. The main source of data was obtained from a global positioning system (GPS) survey using kinematic GPS (GPS-RTK) which allowed continuous point mapping in the terrain. GPS units were utilized in the collection of spatial data for all field work. The co-ordinates obtained were used to produce a point map which was then exported into GIS software where the proximity of cartographic phenomena and boundaries were mapped. All the collected data were subsequently gathered to develop the GIS database which was then used to generate and compile different maps to test for spatial and temporal relationships. The output of the project comprises a GIS database, spatial maps and 3D terrain model of the area. The developed GIS database can be used with other ecological datasets to provide biogeographical information, potential range distribution and sampling adequacy. The database is also applicable to geographical management and multi-disciplinary research projects.
Stem cells from human extracted deciduous teeth (SHED) have the ability to multiply much faster and double their population in culture at a greater rate, indicating that it may be in a more immature state than other type of adult stem cells. Mesenchymal stem cells (MSC) from human primary molars were isolated and cultured in media supplemented with 20% fetal bovine serum. The MSCs were confirmed using CD 105 and CD 166 and the identification of the osteoblast cells were done using reverse transcriptase polymerase chain reaction (RT-PCR) analysis. Differentiated osteoblast cells (DOC) were characterized by alkaline phosphotase and von Kossa staining followed by immunocytochemistry staining using osteocalcin and osteonectin antibodies. Further validation of SHED was done by RT-PCR to detect the presence of insulin-like growth factor 2 (IGF-2) and discoidin domain tyrosine kinase-2 (DDTK-2) transcripts, while the presence of Runx-2 mRNA was used to characterize DOC. The results showed that SHED was found positive for CD 105 and CD 166 and could differentiate into osteoblast, bone forming cells. The findings revealed the presence of distinct MSC population which had the capability to generate living human cells that could be a possible source for tissue engineering in the future.
Introducing CO2 flux as the carbonate source had an effect on the carbonate content of carbonate apatite (CAp) synthesized by solid state reaction. The reactants were CaCO3 and beta-tricalcium phosphate (β-TCP) and the heat treatment in air was performed at 1250ºC followed by instant cooling in CO2 flux for temperatures ranging from 800ºC room temperature (RT) . The influence of CO2 flux at various temperature drop differences in the cooling process (1250ºC RT, 1250ºC–500ºC, 1250ºC–600ºC, 1250ºC–700ºC, and 1250ºC–800ºC) was tested to optimize the carbonation degree and subsequent effects on the physical and mechanical properties of CAp. Thermally treated samples revealed an increasing degree of carbonation, achieving a maximum of 5.2 wt% at the highest (1250ºC RT) and a minimum of 2.7 wt% at the lowest (1250ºC–800ºC) temperature drop differences, respectively. This showed that the carbonate content was correlated with the increase in exposure to CO2 flux. However, consistent compressive strength, tensile strength, density and porosity were observed against increasing temperature drop differences which indicated that the degree of carbonation exerted no influence on the physical and mechanical properties of CAp. This method enabled the synthesis of solid state CAp simply by exposing calcium phosphate mixtures to CO2 flux. It also allowed the control of carbonate content for desired medical applications.
Ordered microporous NaY zeolite and mesoporous copper oxide are high performance material as catalysts and adsorbents. The copper oxide-NaY zeolite modification in combination of their physicochemical properties could provide excellent opportunities for the creation of new gas adsorbents. In this study, modified NaY zeolite properties and methane adsorptive characteristics were investigated by dispersing copper oxide onto the NaY zeolite structure using the thermal dispersion method. The structures of the copper oxide modified zeolites were characterized by powder X-ray diffraction and Micromeritics ASAP 2000, while the methane adsorption characteristics were analyzed using a thermogravimetric analyzer. The results revealed that types of copper oxide, copper oxide loading concentration, calcination temperature and calcination time greatly affected the modified zeolite structure and gas methane adsorption characteristics.