This study analyses the sampling performance of three benthic sampling tools
commonly used to collect freshwater macroinvertebrates. Efficiency of qualitative D-frame
and square aquatic nets were compared to a quantitative Surber sampler in tropical
Malaysian streams. The abundance and diversity of macroinvertebrates collected using
each tool evaluated along with their relative variations (RVs). Each tool was used to
sample macroinvertebrates from three streams draining different areas: a vegetable farm,
a tea plantation and a forest reserve. High macroinvertebrate diversities were recorded using the square net and Surber sampler at the forested stream site; however, very low
species abundance was recorded by the Surber sampler. Relatively large variations in the
Surber sampler collections (RVs of 36% and 28%) were observed for the vegetable farm
and tea plantation streams, respectively. Of the three sampling methods, the square net
was the most efficient, collecting a greater diversity of macroinvertebrate taxa and a
greater number of specimens (i.e., abundance) overall, particularly from the vegetable
farm and the tea plantation streams (RV
Algal communities possess many attributes as biological indicators of spatial and temporal environmental changes. Algal parameters, especially the community structural and functional variables that have been used in biological monitoring programs, are highlighted in this document. Biological indicators like algae have only recently been included in water quality assessments in some areas of Malaysia. The use of algal parameters in identifying various types of water degradation is essential and complementary to other environmental indicators.
To understand the effects of fish predator’s kairomones on Aedes mosquitoes’
oviposition, we established an experiment using gravid Aedes females. Kairomones
concentrations were established using Hampala macrolepidota. One individual fish was
placed inside containers with varying water levels (1 L, 5 L, and 10 L of water). The fish
were kept in the containers for 24 hours and were removed immediately at the start of
each trial in order to have the kairomones remnants. Twenty gravid adult females of
Aedes aegypti and Aedes albopictus were allowed to lay eggs on oviposition site with
various treatments: (1) control without any kairomones; (2) kairomone remnant in 1 L of
water; (3) kairomone remnant in 5 L of water; and (4) kairomone remnant in 10 L of water.
There are significant differences between the numbers of eggs laid by both Aedes species
for each different treatment (F = 9.131, df = 16, p
Heavy metal accumulation and depuration may alter the effectiveness of Meretrix meretrix as a biomonitoring organism for water quality assessment. Therefore, this study was conducted to evaluate the effects of heavy metal accumulation and depuration on M. meretrix, by immersing it in Copper (Cu), Zinc (Zn), and Lead (Pb)
solutions under laboratory conditions. The results showed that M. meretrix is able to accumulate Cu, Zn, and Pb at the rate of 0.99, 21.80, and 0.57 μg/g per day, respectively, and depurates at the rate of 0.42, 23.55, and 1.01 μg/g per day, respectively. These results indicate that M. meretrix could be effectively used as a biomonitoring organism for Cu because the accumulation rate is significantly (p ≤ 0.05) higher than the depuration rate. However, this was not the case for Zn because the accumulation rate was almost similar to the depuration rate, while for Pb, accumulation or depuration did not occur in M. meretrix.
Amyema are epiphytic hemiparasitic plants on different types of woody host plants and are abundant in temperate, subtropical, and tropical regions. In Marilog Forest Reserve, Southern Philippines, two Philippine endemic species of Amyema were recorded, viz., Amyema curranii (Merr.) Danser and A. seriata (Merr.) Barlow. In this study, these two species were compared and examined for their morphology and anatomy. Data revealed that the two Amyema species are morphologically distinct, with A. curranii having lanceolate leaves, pink flowers, and red fruits, whereas A. seriata has obovate leaves, red flowers, and yellow fruits. For the morpho-anatomy, A. curranii has a single-layered epidermis, paracytic stomata, collateral open vascular bundles, the Eustele type of stele with pith at the center, and the inferior free central type with a hairy ovary wall. Meanwhile, A. seriata has a pinkish, single-layered epidermis, paracytic stomata, collateral open vascular bundles, a eustele type of stele with the presence of pith at the center, and an inferior free central ovary type. As a result, employing these species' gross morphology and anatomy could scrutinise future evaluations and taxonomic placements.
F18 plays an important role in helping Enterotoxigenic Escherichia coli (ETEC) binds to specific receptors on small intestinal enterocytes, followed by secreting of toxins causing diarrhea in post-weaning piglets (post-weaning diarrhea, PWD). However, the F18 subunit vaccine is not sufficient to stimulate an immune response that can protect weaning pigs from F18-positive ETEC (F18+ETEC). Recently, a body of evidence shows that flagellin protein (FliC) helps to increase the immunity of fused proteins. Therefore, in this study, we combined FliC with F18 to enhance the immune response of F18. The f18 gene was obtained from F18+ETEC, then was fused with the fliC gene. The expression of recombinant FliC-F18 protein was induced by Isopropyl-beta-D-Thiogalactopyranoside (IPTG). The purified protein was tested in vivo in mouse models to evaluate the immunostimulation. Results showed that the fusion of FliC and F18 protein increased the production of anti-F18 antibodies. Besides, the anti-F18 antibody in the collected antiserum specifically identified F18+ETEC. This result provides proof-of-concept for the development of subunit vaccine to prevent PWD using F18 antigen.
Sacha inchi (Plukenetia volubilis L.) is a well-known oleaginous plant used as food source and traditional medicine by indigenous people for a long time. This study was conducted to evaluate anti-arthritis effect of ethanol extract of Sacha inchi leaves and provide scientific evidence to develop the new anti-arthritis remedy from Sacha inchi. Rheumatoid arthritis model was established by injection of complete Freund's adjuvant into right hind footpads of mice and three doses of ethanol extract of Sacha inchi leaves (100, 200 and 300 mg/kg body weight) were used for treatment. The severity of arthritis was evaluated by measuring the ankle diameter and arthritic score, hematological and biochemical parameters (erythrocytes, leukocytes, lymphocytes, monocytes, granulocytes counts, erythrocyte sedimentation rate, C-reactive protein and rheumatoid factor). The pro-and anti-inflammatory cytokines (TNF-α, INF-γ, IL-1β, IL-6, and IL-10) and the histology change of joint were also examined. All three doses of extracts significantly alleviated ankle diameter and arthritic score. Furthermore, the extracts could ameliorate the alternation of inflammatory cytokines as well histological features of CFA-induced mice. The efficacy of extract dose of 300 mg/kg body weight is comparable with reference drug (Mobic, 0.2 mg/kg body weight). This study indicates Sacha inchi leaf extract as the promising remedy for treatment of arthritis.
The body characteristics and yield indices of Clarias gariepinus, Bagrus bajad, Synodontis nigrita, Labeo senegalensis and Mormyrus rume from lower Benue River in Nigeria were determined in this study using 60 samples each for the fish species. Length, weight and fillet correlations were also determined during the study. Results obtained showed that M. rume, L. senegalensis and C. gariepinus had the highest percentage of edible parts (≥ 55%) compared to the other species (≤ 39%). Concerning correlations of the fillet with the morphological variables, results obtained suggest that fillet yield is independent of fish size (except for C. gariepinus which was positively correlated). Also, only samples of L. senegalensis showed isometric growth pattern; the other fish species had either positive (C. gariepinus and B. bajad) or negative (S. nigrita and M. rume) allometric growth. While the difference in fillet yield and body characteristics was attributed to the structural anatomy and other biological dynamics of the fishes, this study could not establish a connection between fillet yield and the length-weight relationship. It was concluded that M. rume, L. senegalensis and C. gariepinus would be better export products because of their higher fillet yields.
Bagworm Metisa plana is one of the major pests in Malaysia's oil palm plantation, with infestation resulting in huge economical loss. Currently, the microbial profile of the bagworm has yet to be study. Understanding the biology of the pest such as the bacterial community is crucial as bacteria associated with insects often provide benefits to the insect, giving the insect host a better chance of survival. Here, 16S amplicon sequencing was used to identify the bacteria community of M. plana. Additionally, two comparisons were made, the bacterial communities between two larval stages (early instar stage and late instar stage) from outbreak area; the bacterial communities of late instar stage larvae from non-outbreak between outbreak areas. From this study, it was found that the bacterial community of M. plana consisted of Proteobacteria, Actinobacteria, Bacterioidetes, Firmicutes and other minor phyla, with Proteobacteria being the most dominant phylum. Furthermore, bacterial genera of M. plana consisted of Pantoea, Curtobacterium, Pseudomonas, Massilia and other minor genera, with Pantoea being the most dominant. It was also found that the alpha and beta diversity in both comparisons were not significantly different. We present our data as a first insight towards the bacterial community of M. plana, paving a way towards understanding the biology of the bagworm M. plana.
Seeds of two selected clones of Artemisia annua L., TC1 and TC2, were germinated in a greenhouse. Four-week-old seedlings from both clones were grown in the Thù Đúc province of Ho Chi Minh City on 2(nd) January 2009 and Đà Lat on 20(th) January 2009. During this study period in Thù Đúc province, which is situated 4-5 m above sea level, was experiencing a tropical, dry season with temperatures ranging from 26.2°C-32.8°C. Đà Lat, situated at 1500-2000 m above sea level, was having temperate, dry season with lower temperatures, ranging from 10.5°C-18.0°C. The high temperatures and low elevation in Thù Đúc Province led to slow vegetative growth for all of the plants from the two different clones and the artemisinin contents were significantly reduced. The temperate environment of Đà Lat supported robustly growing plants, with plant heights and branch lengths 4-5 times taller and longer that those planted at Thù Đúc Province. The artemisinin contents of A. annua planted at Đà Lat were 3-4 times greater than those cultivated at Thù Đúc Province. Hence, this study indicated that the variations observed in plant growth and artemisinin contents were due to temperature effects because the two selected clones were genetically homogenous. The cold weather of Đà Lat was suitable for planting of A. annua as opposed to the tropical weather of Thù Đúc Province.
Agricultural development in the tropics lags behind development in the
temperate latitudes due to the lack of advanced technology, and various biotic and abiotic
factors. To cope with the increasing demand for food and other plant-based products,
improved crop varieties have to be developed. To breed improved varieties, a better
understanding of crop genetics is necessary. With the advent of next-generation DNA
sequencing technologies, many important crop genomes have been sequenced. Primary
importance has been given to food crops, including cereals, tuber crops, vegetables, and
fruits. The DNA sequence information is extremely valuable for identifying key genes
controlling important agronomic traits and for identifying genetic variability among the
cultivars. However, massive DNA re-sequencing and gene expression studies have to be
performed to substantially improve our understanding of crop genetics. Application of the
knowledge obtained from the genomes, transcriptomes, expression studies, and
epigenetic studies would enable the development of improved varieties and may lead to a
second green revolution. The applications of next generation DNA sequencing
technologies in crop improvement, its limitations, future prospects, and the features of
important crop genome projects are reviewed herein.
Genetic engineering is a powerful tool for the improvement of plant traits. Despite reported successes in the plant kingdom, this technology has barely scratched the surface of the Melastomataceae family. Limited studies have led to some optimisation of parameters known to affect the transformation efficiency of these plants. The major finding of this study was to optimise the presence of selected enhancers [e.g., monosaccharides (D-glucose, D-galactose and D-fructose), tyrosine, aluminium chloride (AICI3) and ascorbic
acid] to improve the transformation efficiency of Tibouchina semidecandra. Agrobacterium tumefaciens strain LBA4404 harbouring the disarmed plasmid pCAMBIA1304 was used to transform shoots and nodes of T. semidecandra. Different concentrations of the transformation enhancers were tested by using green fluorescent protein (GFP) as a reporter. The results obtained were based on the percentage of GFP expression, which was observed 14 days post-transformation. A combination of 120 µM galactose and 100
µM tyrosine supplemented with 600 µM AICI3 in the presence of 15 mg/l ascorbic acid gave the highest percentage of positive transformants for T. semidecandra shoots. Whereas 60 µM galactose and 50 µM tyrosine with 200 µM AICI3 in the presence of 15 mg/l ascorbic acid was optimum for T. semidecandra nodes. The presence of the hygromycin phosphotransferase II (hptII) transgene in the genomic DNA of putative
T. semidecandra transformants was verified by PCR amplification with specific primers.
An endophytic Escherichia coli USML2 originally isolated from the inner part of an oil palm (Elaeis guineensis Jacq.) leaf tissue was inoculated to rice seedlings to investigate its ability in colonising plant inner tissues and promoting growth. Infection of E. coli USML2 was initiated by colonisation on the root surface, invasion of the interior root system followed by endophytic spreading. Inoculation of E. coli USML2 in the rice rhizosphere zone resulted in a significant increase in leaf numbers (33.3%), chlorophyll content (33.3%), shoot height (34.8%) and plant dry weight (90.4%) of 42 days old rice seedlings as compared to the control. These findings also demonstrated the ability of E. coli USML2 to spread endophytically which serves as a beneficial strategy for the bacterium to colonise the host plant and gain protection against adverse soil conditions. The genome of E. coli USML2 had also revealed predicted genes essential for endophytic bacterial colonisation and plant growth promotion which further proven potentials of E. coli USML2 as Plant Growth Promoting Endophyte (PGPE).
The influence of the cool and warm temperatures on early life development and
survival of tropical oyster, Crassostrea iredalei was studied. D-hinged larvae (day 1 larvae)
were reared to three different temperatures (20°C, 27°C, and 34°C) for nine days. Oyster
larvae reared in temperature 27°C, acted as control (ambient temperature). The highest
survival rate occurred when the larvae were reared in 20°C and 27°C. Larvae reared at
34°C exhibited reduced survival but increase in the growth rate. The growth rate in larvae
reared in high temperature (34°C) was significantly higher compared to larvae reared in
20°C and 27°C (p
Nutritional quality of the hepatopancreas and gonads of orange portunid mud crab, Scylla olivacea was evaluated for each gender under four treatment of different water velocities (0, 20, 40 and 60 cm s-1), in terms of nutrient reserve and nutrient for reproduction. About 56 crabs were used in this study in which fatty acids composition was analysed using gas chromatography mass-spectrometry (GC-MS). For hepatopancreas analysis, monounsaturated fatty acids (MUFAs) were present in the highest fatty acids concentration, followed by polyunsaturated fatty acids (PUFAs) and, saturated fatty acids (SFAs). However, long-chain polyunsaturated fatty acids (LC-PUFAs) were displayed in low concentration in the hepatopancreas. Total fatty acid (TFAs) composition was significantly higher at moderate velocity of 20 cm s-1 compared to other water velocity treatments. For gonad analysis, 20 cm s-1 showed the highest TFA concentration of 93.34 mg g-1 while, the lowest concentration of 3.90 mg g-1 occurred at 0 cm s-1. There were significant differences in male and female crab's fatty acids contents of gonads at all flow velocities challenged (p < 0.05). PUFAs and MUFAs were dominant while, SFAs were observed at low concentration. This study revealed that, concentration of PUFAs increased as gonad maturation increased. The decreasing concentration of hepatopancreas fatty acids over the culture period indicated that nutrient was shifted from the hepatopancreas, to be used as energy reserved to gonads for further growth of eggs and offspring. The linkages between water flow strength, hepatopancreas, and gonad fatty acids concentrations, is fundamental knowledge useful in establishing efficient habitat velocities selection which will improve aquaculture production of mud crabs with high quality broodstock.
Silver nanoparticles (AgNPs) have numerous applications in plant biotechnology. The unique biological activities of AgNPs in reducing microbial contamination and promoting in vitro plant growth have encouraged their use in the development of novel culture systems for the in vitro cultivation of several plant species. In this study, the influence of (80 nm-100 nm) AgNPs on the micropropagation of banana was examined by incorporating AgNPs into shoot multiplication and rooting media at concentrations of 3 mg/L-15 mg/L. Biometric parameters for shoot multiplication (number of shoots/explant, shoot length and leaf surface area) and root development (number of roots/explant and root length) were analysed. In addition, shoot chlorophyll content, proline content and the possible impact of lipid peroxidation on membrane stability of plantlets were estimated. The results showed that all concentrations of AgNPs stimulated shoot growth and enhanced root development. The highest response was observed in media supplemented with 12 mg/L AgNPs. This optimal level of AgNPs caused a threefold increase in shoot growth parameter and a similar increase in root numbers/shoot and root length. Treatment with AgNPs at 12 mg/L also increased chlorophyll and proline content of shoots by 25% and 120% over control, respectively. Although the application of AgNPs increased the level of lipid peroxidation in shoots, it however, had a limited influence on membrane stability index. These results suggested that the administration of AgNPs to culture media can be effectively utilised for the enhancement of banana micropropagation with minimal toxic effects.
Alpinia conchigera Griff. is a plant species from the family Zingiberaceae. Coloquially known as wild ginger, Alpinia conchigera Griff. is used as food condiment and for traditional treatment of skin diseases. Isolation studies to identify bioactive compounds of rhizomes of Alpinia conchigera yielded seven compounds; 1'S-1'-acetoxychavicol acetate (1), trans-p-coumaryl diacetate (2), p-hydroxycinnamyl acetate (3), 1'S-1'-hydroxychavicol acetate (4) p-hydroxybenzaldehyde (5), stigmasterol (6) and β-sitosterol (7). Compounds 1, 2 and 5 were evaluated for antimicrobial activity against methicillin-resistant Staphylococcus aureus (MRSA). Among the compounds tested, Compound 1 showed good antimicrobial activity against the strain of MRSA with minimum inhibition concentration (MIC) value of 0.5 mg/mL. Meanwhile, Compounds 2 and 5 exhibited moderate activity with MIC value between 1.0 and 2.0 mg/mL. These findings indicate antimicrobial potential of 1'S-1'-acetoxychavicol acetate (1), compound derived from rhizome of Alpinia conchigera Griff. against MRSA, which warrant further investigation.
Kelantan is a chiefly agrarian state with abundant small-holder ruminant farms in the East Coast economic Region of Malaysia. Ectoparasitism affects small ruminant production in Malaysia. It often causes reduction in meat quality and milk production which affect the farmers' income. To date, no report for the prevalence of ectoparasitism on small ruminant in Kelantan compared to other state in Malaysia. This study aims to determine the prevalence and associated risk factor of ruminant ectoparasitism in Kelantan. Ectoparasites were collected by manual picking and skin scrapping from 462 sheep and goats in Kelantan between April and September 2017 (during dry season). 60% of the sampled animals were infested with at least one species of the ectoparasites. In this study, lice and ticks were the most prevalent ectoparasites on small ruminant, which were 43.64% and 22.98%, respectively. The high biotic potential of lice population on host might be one of the factors they become the most prevalent species found on the animals. There was no significant relationship between ectoparasitism prevalence and species of small ruminants (χ2 = 1.12, p = 0.293). However, there was significant variations in prevalence between the regions where the animals were sampled from (χ2 = 30.25, p = 0.002) and farm management system for both species. This present study provides baseline epidemiological data on the prevalence of ectoparasitism in small ruminant. This information is useful for the formulation of prevention and control measures in order to enhance ruminant productivity in Kelantan.
Andaliman (Zanthoxylum acanthopodium DC) is a native plant of North Sumatra province. Zanthoxylum acanthopodium is a member of Rutaceae family widely found in northern Sumatra, Indonesia. The aim of this study was to barcode Z. acanthopodium in North Sumatra province, Indonesia based on cpDNA maturase K (matK). Samples were collected in seven localities across six regions of North Sumatra province. Phylogenetic analysis was conducted using Maximum Likelihood method. The results of phylogenetic analysis indicate that Z. acanthopodium is a monophyletic group that is derived from a common ancestor. The results of the phylogenetic tree construction show that there is a grouping of accession between Z. acanthopodium species separate from other species in the Zanthoxylum genus as well as those of the Rutaceae family. The results showed that cpDNA matK marker can effectively be used as DNA barcoding to identify Z. acanthopodium.
The objective of this study was to investigate the mixed culture of Bacillus subtilis, B. licheniformis and B. megaterium to control acute hepatopancreatic necrosis disease (AHPND) or EMS (Early Mortality Syndrome) in white shrimp Litopenaeus vannamei as a model. The infected shrimps with Vibrio parahaemolyticus AHPND strain were divided into tanks and different feeding of either B. subtilis, B. licheniformis, B. megaterium or all Bacillus strains. The infected shrimps that were fed with a mixed culture of Bacillus showed significantly highest survival rate and revealed lower percent detection of V. parahaemolyticus AHPND strain by Polymerase Chain Reaction (PCR) (57.14%) with a small amount of viability count in their hepatopancreas. In contrast, the infected shrimps that were fed with each of B. subtilis, B. licheniformis or B. megaterium, revealed the spread of V. parahaemolyticus AHPND strain in all tissue by PCR detection (86.67%-100%) with a large amount of viability count (3.53 - 4.24 × 103 CFU/g). This study indicated that the mixed culture of Bacillus subtilis, B. licheniformis and B. megaterium could control the dissemination of V. parahaemolyticus in shrimps, especially in hepatopancreatic that is the target tissue of AHPND in white shrimp (L. vannamei). The result of this study revealed the efficiency and mechanism of the mixed culture of B. subtilis, B. licheniformis and B. megaterium to control the virulence of AHPND and support the application of this mixed culture in aquaculture of shrimp farms to avoid chemical and antibiotic treatment by using it as a biological control.