Displaying publications 61 - 80 of 371 in total

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  1. Engku Kamarudin EM, Wan Sulaiman WS, Sarnon NH, Amin AS
    Data Brief, 2020 Jun;30:105586.
    PMID: 32346583 DOI: 10.1016/j.dib.2020.105586
    The readiness to change among drug addicts is a key strength for successful treatment. Self-awareness, self-determination, and self-efficacy have been identified as the fundamentals of readiness that should be embraced by drug addicts while in treatment. In this article, the shared data were applied to assess the effect of individual psycho-educational intervention based on integrated self-awareness and self-determination theories (i-SEAZ) on self-efficacy amongst opioid-dependent patients undergoing methadone treatment (MT). The effectiveness of the i-SEAZ module was evaluated in a total of 75 opioid-dependent MT participants from five Methadone Clinics under the Ministry of Health, Malaysia located across Klang Valley. The experimental group consisted of 38 participants who received 10 sessions of individual i-SEAZ alongside MT, whereas 37 participants of the control group only received MT. The shared data were collected through three questionnaires, namely Scale for Self-Consciousness Assessment (SSCA), Treatment Motivation Questionnaire (TMQ), and General Self Efficacy (GSE). Data collection was performed twice; the first instance was two weeks prior to initiation of i-SEAZ (pretest), and the second was two weeks post completion of i-SEAZ (posttest). The extracted data were precisely represented in terms of means and standard deviations (SDs).
  2. Razali MH, Ismail NA, Amin KAM
    Data Brief, 2020 Jun;30:105478.
    PMID: 32346560 DOI: 10.1016/j.dib.2020.105478
    Gellan gum incorporating titanium dioxide nanoparticles biofilm was synthesized and characterized using UV, FTIR and XRD to study their physical and chemical properties. The mechanical properties were measured using universal mechanical testing. Meanwhile, the biological properties were investigated towards for antibacterial and cell proliferation. This comprehensive data are relevant with the research article entitled "Gellan gum incorporating titanium dioxide nanoparticles biofilm as wound dressing: Physicochemical, mechanical, antibacterial properties and wound healing studies" [1].
  3. Idris MS, Lee Siang H, Amin RM
    Data Brief, 2020 Feb;28:104982.
    PMID: 31890817 DOI: 10.1016/j.dib.2019.104982
    The biophysical data presented in this article were collected in the east coast of Peninsular Malaysia from May to November 2009. These monthly surface data were obtained from 32 stations along the coastal-offshore transect and were analyzed to understand the spatial and temporal distributions of biophysical parameters during different monsoon seasons. The data presented here include sea surface temperature (SST), sea surface salinity (SSS), Secchi disk depth (SDD), Chlorophyll-a (Chl-a), suspended particulate matter (SPM), mineral suspended solid (MSS) and chromophoric dissolved organic matter (CDOM).
  4. Vassiliev P, Iezhitsa I, Agarwal R, Marcus AJ, Spasov A, Zhukovskaya O, et al.
    Data Brief, 2018 Jun;18:340-347.
    PMID: 29896521 DOI: 10.1016/j.dib.2018.02.067
    This article contains data that relate to the study carried out in the work of Marcus et al. (2018) [1]. Data represent an information about pharmacophore analysis of imidazo[1,2-a]benzimidazole and pyrimido[1,2-a]benzimidazole derivatives and results of construction of the relationship between intraocular pressure (IOP) lowering activity and hypotensive activity of imidazo[1,2-a]benzimidazole and pyrimido[1,2-a]benzimidazole derivatives using a multilayer perceptron artificial neural network. In particular, they include the ones listed in this article: 1) table of all pharmacophores of imidazo[1,2-a]benzimidazole and pyrimido[1,2-a]benzimidazole derivatives that showed IOP lowering activity; 2) table of all pharmacophores of the compounds that showed absence of IOP lowering activity; 3) table of initial data for artificial neural network analysis of relationship between IOP activity and hypotensive activity of this chemical series; 4) graphical representation of the best neural network model of this dependence; 5) original txt-file of results of pharmacophore analysis; 6) xls-file of initial data for neural network modeling; 7) original stw-file of results of neural network modeling; 8) original xml-file of the best neural network model of dependence between IOP lowering activity and hypotensive activity of these azole derivatives. The data may be useful for researchers interested in designing new drug substances and will contribute to understanding of the mechanisms of IOP lowering activity.
  5. Fesol SFA, Arshad MM
    Data Brief, 2020 Dec;33:106421.
    PMID: 33102666 DOI: 10.1016/j.dib.2020.106421
    This paper presents the dataset of undergraduates learning habits during and before the occurrence of pandemic COVID-19 under the scope of sociodemographic and psychological aspects. This dataset consists of four (4) main sections which are students' demographic, psychological disruption, students' learning habits and integration of online sessions with sustainability topics. A total of 37 variables were distributed via an online survey platform. The link of the online survey was circulated to the students using few social media platforms such as WhatsApp groups, Telegram, and faculties' Facebook starting from June 1 until June 31, 2020. There was a total of 668 respondents accompanied by consent were agreed to join the survey. This dataset can have an important role for research and education in identifying the impact on learning performance among the undergraduate students during COVID-19 pandemic based on different sociodemographic and psychological aspects.
  6. Osman UM, Farizal ASN, Kadir MA, Razali MH, Rozaini MZH, Arshad S
    Data Brief, 2019 Dec;27:104673.
    PMID: 31720328 DOI: 10.1016/j.dib.2019.104673
    New compound, namely (Z)-1-[4-(trifluoromethyl)benzylidene]thiosemicarbazide was successfully synthesized using thiosemicarbazide with 4-(trifluoromethyl)-benzaldehyde in ethanol solution. The data presented in this articles is related to our research articles entitled "Crystal Structure of (Z)-1-[4-(Trifluoromethyl)benzylidene]thiosemicarbazide" (Osman et al., 2017) [1]. This work shows the continue data from experimental spectroscopic measurement which are Fourier Transform Infrared (FTIR) and 13C Nuclear Magnetic Resonance (13C NMR). Assessment on the correlation with theoretical computational data was also carried out through GaussView 5.0.9 and Gaussian09 software. Molecular Electrostatic Potential (MEP) and Highest Occupied Molecular Orbital-Lowest Unoccupied Molecular Orbital (HOMO-LUMO) were also illustrated.
  7. Aziz AA, Zulbahri AS, Sharif MF, Mohamad MAN, Gan HM, Azizan NH
    Data Brief, 2022 Dec;45:108718.
    PMID: 36624876 DOI: 10.1016/j.dib.2022.108718
    Bacillus sp. has been reported to be involved in the biodegradation of various hydrocarbon pollutants which can potentially be useful in cleaning up hydrocarbon pollutants. Here we report the draft genome of Bacillus altitudinis strain ST14 isolated from Tunggak river, Gebeng, Kuantan, an area in close proximity to industrial activities. Genome sequencing was conducted using Illumina NovaSEQ 6000 technology. Structural genes in the genome were described, including rRNAs, tRNAs, and ncRNAs. Bacillus altitudinis strain ST14 was sequenced with a length of 3,801,811 bp containing 3,891 coding sequences (CDS). Functional gene annotation reported the presence of six enzymes involved in the degradation of aromatic compounds often found in hydrocarbon pollutants.
  8. Taheri S, Abdullah TL, Noor YM, Padil HM, Sahebi M, Azizi P
    Data Brief, 2018 Aug;19:2452-2454.
    PMID: 30246104 DOI: 10.1016/j.dib.2018.07.038
    Curcuma alismatifolia, is an Asian crop from Zingiberaceae family, popularly used as ornamental plant in floriculture industry of Thailand and Cambodia. Different varieties with a wide range of colors can be found in species. Until now, few breeding programs have been done on this species and most commercially important cultivars are hybrids that are propagated vegetatively. In spite of other flowering plants, there is still lack of transcriptomic-based data on the functions of genes related to flower color in C. alismatifolia. The raw data presented in this article provides information on new original transcriptome data of two cultivars of C. alismatifolia by Illumina Hiseq. 4000 RNA-Seq technology which is the first ever report about this plant. The data is accessible via European Nucleotide Archive (ENA) under project number PRJEB18956.
  9. Arifin MH, Kayode JS, Ismail KI, Abdullah M, Embrandiri A, Nazer SM, et al.
    Data Brief, 2020 Dec;33:106595.
    PMID: 33318980 DOI: 10.1016/j.dib.2020.106595
    Industrial, and municipal wastes are part of the main sources of environmental hazards as well as groundwater and surface water pollutions. If not well composed, treated, and safely disposed, it could permeate through the subsurface lithologies by reaching down to the underground water aquifers, particularly in zones of unprotected aquifer units. Pollutants, most especially the landfills leachates that encompassed organic contaminants, ammonia, nitrates, total nitrogen, suspended solids, heavy metals and soluble inorganic salts, i.e., soluble nitrogen, sulphur compound, sulphate and chlorides, could posed undesirable environmental impacts due to inappropriate disposals that may give rise to gaseous fumes and leachate formations. An electrical resistivity geophysical technique utilizing the RES2D no-invasive, cost-effective and rapid method of data collection was integrated with the 3D Oasis Montaj software to approximate the volume of the generated rectangular prism model of the contaminants delineated from mixtures of the industrial, and municipal wastes plumes to be 312,000 m 3.
  10. Arifin H, Kayode J, Arifin K, Zahir Z, Abdullah M, Azmi A
    Data Brief, 2020 Jun;30:105491.
    PMID: 32373680 DOI: 10.1016/j.dib.2020.105491
    The Transient Electro-Magnetic (TEM) geophysical technique was deployed to map and characterized the subsurface of Pahang River Basin along the East Coast Peninsula Malaysia. The data aimed at differentiating between the massive zones and the weak zones within the region, to also assess and differentiate the subsurface structures and comes up with recommendations for policy decision, formulation and plans on the flooding impact, surface water and groundwater managements, in addition to other environmental related issues ravaging the area. The data presented in this paper, showed the properties of the subsurface rocks underlain the region as beneficial to the Agriculturists; Climatologists; Engineers; Environmentalists; Geoscientists, Hydrologists and Policy formulation officers. The TEM data collection utilized a 100 m x 100 m single loop coil for both the Transmitter (Tx) loop and the Receiver (Rx) loop to produce a total surface area coverage of 10,000 m2 per survey line along a single profile. The total area covered in the data extended across an average area of 30 km x 40 km in parts of Maran, Temerloh and Jerantut districts, within the State of Pahang, East Coast, Peninsula Malaysia. The conductivity data recorded varied from -20 mS/m to about 440 mS/m at a maximum depth of about 375 m. On the other hand, the resistivity data recorded varied from 0 Oh-m to about 1000 Oh-m. The information derived from the data are intended for potential abstraction by the Malaysian Groundwater Management Board; the Department of Mineral and Geoscience; Department of Irrigation and Drainage; the Pahang State Water Board, and the Department of Agriculture.
  11. Yan TK, Asari A, Abdullah S, Ismail M, Azmi WA
    Data Brief, 2019 Aug;25:104227.
    PMID: 31367662 DOI: 10.1016/j.dib.2019.104227
    Rhynchophorus ferrugineus or red palm weevil (RPW) is a destructive insect pest of major cultivated palms such as coconut, date and oil palm. One of the control management of RPW is trunk injection using monocrotophos or methamidophos, but these chemicals are found to affect ecosystems and human health. Thus, we aimed to determine a bio-pesticide to replace these synthetic chemicals. We tested the antifeedant activity of three eugenol-based compounds as potential control agent against RPW larvae in vitro condition for two weeks. All these compounds show significant effect as feeding deterrent agent on 4th instar larvae, while WN16 (4-allyl-2-methoxy-1-(4-trifluoromethyl-benzyloxy)-benzene) shows the highest feeding deterrent index (FDI = 64.42%). Here we present the data regarding the biological aspect on treated RPW larvae as well as antifeedant activity index of these eugenol derived compounds.
  12. Cheong JL, Azmi WA
    Data Brief, 2020 Jun;30:105482.
    PMID: 32368576 DOI: 10.1016/j.dib.2020.105482
    Red palm weevil (RPW), Rhynchophorus ferrugineus, is a polyphagous insect that caused economic damage in various palm species, particularly coconut plantation in Malaysia. Therefore, entomopathogenic fungus Metarhizium anisopliae was being introduced in attempts to control biologically the RPW. The entomopathogenicity of an indigenous (Met-Gra4) and foreign (Met-TH) strains of M. anisopliae isolated from the soil of Malaysia and Thailand, were tested against RPW adults in laboratory bioassays at 50, 70, 90% relative humidity (RH). Bioassays indicate no significance differences in efficacy between both the conidia of M. anisopliae strains against RPW adults. Met-Gra4 showed the highest efficacy at 90% RH (LT50 = 6.17 days). However, LT50 only slightly differed from Met-TH (6.33 days; 90% RH). Scanning el ectron microscopy for the treated RPWs showed that Met-Gra4 (90% RH) was densely sporulated within the abdomen, while Met-TH can be found mainly across cuticular surface of RPW.
  13. Ikhwanuddin M, Abol-Munafi AB, Azra MN
    Data Brief, 2019 Aug;25:104196.
    PMID: 31321277 DOI: 10.1016/j.dib.2019.104196
    This data article includes raw and analyze data for molting duration and time of hardening of blue swimming crab, Portunus pelagicus instar at three different temperatures of 24 °C, 28 °C, and 32 °C. Two sets of experimental data are included: first, the recorded on time-lapse video of duration of successful molted crabs (from emergence of swimming legs to chelae); and second, the time interval of shell hardening up to before molting occurred. Shell hardening were calculated in 1 h interval with a unit of x hour molting crab-1, meanwhile the molting duration of the crabs were calculated in x second molting crab-1. Video files were then analyzed using the latest version of Solomon Coder software developed by A. Peter. Relationship between culture temperature and the time of molting and carapace hardening are also included in this article. The dataset is made publicly available to enable critical or extended analyzes.
  14. Ikhwanuddin M, Amin-Safwan A, Hasyima-Ismail N, Azra MN
    Data Brief, 2019 Oct;26:104477.
    PMID: 31667242 DOI: 10.1016/j.dib.2019.104477
    The present paper contains two datasets; i) the growth band count (GBC) of mud crab, Scylla olivacea collected from Setiu Wetlands, Terengganu coastal water, East coast of Peninsular Malaysia and ii) the increment sizes of body weight (BW) and carapace width (CW) of immature S. olivace after molting. The datasets presented here were associated with the research articles entitled i) "Study on carapace width growth band counts relationship of orange mud crab, S. olivacea (Herbst, 1796) from Terengganu Coastal Waters, Malaysia" (Hasyima-Ismail et al. 2017) [1] and ii) "Relationship between the carapace width and body weight increments and the confirmation of Stage 1 ovary after the molting of immature orange mud crabs, S. olivacea (Herbst, 1796), in captivity" (Amin-Safwan et al. 2019-2020) [2], and provided here as raw data of Supplementary materials. Raw datasets for GBC in the wild were generated by examination of the thin cross sectioning process of the gastric mill of S. olivacea. The GBC were measured for each individual crab wherein band counts ranged from 1 to 3. The analysis provides evidence that the GBC of the crabs can be determined through both mesocardiac and zygocardiac ossicles. This data is of importance to researchers for estimation of stock assessment and improvement of fisheries management to further improve policy. For the BW-CW increment data, a total of 135 immature crabs were sampled from Setiu Wetlands, Terengganu, Malaysia, and were introduced to limb autotomy technique in order to induced molt. Crabs were reared until successful molting and immediately prior to hardened shell, before final measurement of body weight and carapace width determination. Recorded data was analyzed by calculating the increment sizes, along with correlation and regression analysis between body weight and carapace width of mud crabs.
  15. Jazamuddin FM, Aizat WM, Goh HH, Low CF, Baharum SN
    Data Brief, 2018 Feb;16:466-469.
    PMID: 29255779 DOI: 10.1016/j.dib.2017.11.024
    Vibriosis disease by Vibrio spp. greatly reduced productivity of aquaculture, such as brown-marbled grouper (Epinephelus fuscoguttatus), which is an economically important fish species in Malaysia. Preventive measures and immediate treatment are critical to reduce the mortality of E. fuscoguttatus from vibriosis. To investigate the molecular mechanisms associated with immune response and host-bacteria interaction, a transcriptomic analysis was performed to compare between healthy and Vibrio-infected groupers. This permits the discovery of immune-related genes, specifically the resistance genes upon infection. Herein, we provide the raw transcriptome data from Illumina HiSeq. 4000 that have been deposited into NCBI SRA database with the BioProject accession number PRJNA396437. A total of 493,403,076 raw sequences of 74.5 Gb were obtained. Trimming of the raw data produced 437,186,232 clean reads of ~58 Gb. These datasets will be useful to elucidate the defence mechanisms of E. fuscoguttatus against Vibrio vulnificus infection for future development of effective prevention and treatment of vibriosis.
  16. Rahman MNIA, Jeofry H, Basarian MS
    Data Brief, 2020 Oct;32:106194.
    PMID: 32904202 DOI: 10.1016/j.dib.2020.106194
    The survey data on potential aquifer was collected at two sites located in Banggi Island (i.e. Laksian Primary School [LPS] and Padang Primary School [PPS]), Malaysia on 25 and 26 April 2013. Both locations are geologically surrounded by various types of lithologies, namely, sandstone, mudstone, siltstone, shale, chert, conglomerate, lignite, tuff, limestone, terrace sand, gravel and coral. The resistivity data consisted of six-line pole-dipole short arrays and were recorded in-situ using SAS 4000 ABEM Lund Imaging System, together with a relay switching unit (Electrode Selector ES 464), six multiconductor cables, steel rod electrodes and jumpers. The data, namely electrode spacing, depth of investigation, subsurface resistivity, type of material and horizontal data coverage were used to assess the characteristics of the potential aquifer. The recorded data were then processed using RES2DINV software to obtain 2-D inversion model of the subsurface. The data were also equipped with six models of inverse resistivity section for both areas. The data obtained can be used by the government and stakeholders for groundwater exploration and extraction in order to provide water supplies for local communities, especially since access to these resources from the surrounding water treatment plants on the island is limited.
  17. Gosztonyi M, Havran D, Pollák Z, Berlinger E
    Data Brief, 2023 Apr;47:108946.
    PMID: 36845647 DOI: 10.1016/j.dib.2023.108946
    The dataset presented in this paper consists of a network of interpersonal lending relations from a single village of a deprivated area of Hungary. The data are originated from quantitative surveys from May 2014 to June 2014. The data collection was embedded in a Participatory Action Research (PAR) which aimed to investigate the financial survival strategies of low-income households in a Hungarian village in a disadvantaged region. The directed graphs of lending and borrowing are a unique dataset that empirically captures a hidden and informal financial activity between households. The network contains 164 households and 281 credit connections among them.
  18. Amelia TSM, Lau NS, Amirul AA, Bhubalan K
    Data Brief, 2020 Aug;31:105971.
    PMID: 32685631 DOI: 10.1016/j.dib.2020.105971
    Marine sponges are acknowledged as a bacterial hotspot and resource of novel natural products or genetic material with industrial or commercial potential. However, sponge-associated bacteria are difficult to be cultivated and the production of their desirable metabolites is inadequate in terms of rate and quantity, yet bioinformatics and metagenomics tools are steadily progressing. Bacterial diversity profiles of high-microbial-abundance wild tropical marine sponges Aaptos aaptos and Xestospongia muta were obtained by sample collection at Pulau Bidong and Pulau Redang islands, 16S rRNA amplicon sequencing on Illumina HiSeq2500 platform (250 bp paired-end) and metagenomics analysis using Ribosomal Database Project (RDP) classifier. Raw sequencing data in fastq format and relative abundance histograms of the dominant 10 species are available in the public repository Discover Mendeley Data (http://dx.doi.org/10.17632/zrcks5s8xp). Filtered sequencing data of operational taxonomic unit (OTU) with chimera removed is available in NCBI accession numbers from MT464469 to MT465036.
  19. Govindasamy S, Syafiq IM, Amirul AA, Amin RM, Bhubalan K
    Data Brief, 2019 Apr;23:103675.
    PMID: 30788397 DOI: 10.1016/j.dib.2019.01.023
    A significant source of microplastics is from the usage of microbeads in the market since petrochemical plastic bead is a material used in cosmetic scrubs. A possible way to counteract the problem is by the substitution of synthetic plastic to natural biodegradable polymer. Polyhydroxyalkanoate (PHA) is a general class of thermoplastic microbial polymer and it is the best alternative to some petrochemical plastics due to its biodegradability. Some PHA has earned its way into cosmetic application due to its biocompatibility. This data article reports data on the development of biodegradable microbeads by using the double emulsion solvent evaporation technique. Our data describe the extraction of biopolymer from marine bacteria that was cultivated in shaken flask culture, removal of endotoxins using oxidizing agent, the production of microbeads using a peristaltic pump with a specific flowrate and silicon tubing, and the cytotoxicity of the microbeads.
  20. Amelia TSM, Amirul AA, Bhubalan K
    Data Brief, 2018 Feb;16:75-80.
    PMID: 29188224 DOI: 10.1016/j.dib.2017.11.011
    We report data associated with the identification of three polyhydroxyalkanoate synthase genes (phaC) isolated from the marine bacteria metagenome of Aaptos aaptos marine sponge in the waters of Bidong Island, Terengganu, Malaysia. Our data describe the extraction of bacterial metagenome from sponge tissue, measurement of purity and concentration of extracted metagenome, polymerase chain reaction (PCR)-mediated amplification using degenerate primers targeting Class I and II phaC genes, sequencing at First BASE Laboratories Sdn Bhd, and phylogenetic analysis of identified and known phaC genes. The partial nucleotide sequences were aligned, refined, compared with the Basic Local Alignment Search Tool (BLAST) databases, and released online in GenBank. The data include the identified partial putative phaC and their GenBank accession numbers, which are Rhodocista sp. phaC (MF457754), Pseudomonas sp. phaC (MF437016), and an uncultured bacterium AR5-9d_16 phaC (MF457753).
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