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Fulltext Molecular characterization of pathogenic Fusarium species in cucurbit plants from Kermanshah province, Iran

Chehri K, Salleh B, Yli-Mattila T, Reddy KR, Abbasi S

Saudi J Biol Sci, 2011 Oct;18(4):341-51.
PMID: 23961146 DOI: 10.1016/j.sjbs.2011.01.007

Fusarium is one of the important phytopathogenic genera of microfungi causing serious losses on cucurbit plants in Kermanshah province, the largest area of cucurbits plantation in Iran. Therefore, the objectives in this study were to isolate and identify disease-causing Fusarium spp. from infected cucurbit plants, to ascertain their pathogenicity, and to determine their phylogenetic relationships. A total of 100 Fusarium isolates were obtained from diseased cucurbit plants collected from fields in different geographic regions in Kermanshah province, Iran. According to morphological characters, all isolates were identified as Fusarium oxysporum, Fusarium proliferatum, Fusarium equiseti, Fusarium semitectum and Fusarium solani. All isolates of the five Fusarium spp. were evaluated for their pathogenicity on healthy cucumber (Cucumis sativus) and honeydew melon (Cucumis melo) seedlings in the glasshouse. F. oxysporum caused damping-off in 20-35 days on both cucurbit seedlings tested. Typical stem rot symptoms were observed within 15 days after inoculation with F. solani on both seedlings. Based on the internal transcribed spacer (ITS) regions of ribosomal DNA (rDNA) restriction fragment length polymorphism (RFLP) analysis, the five Fusarium species were divided into two major groups. In particular, isolates belonging to the F. solani species complex (FSSC) were separated into two RFLP types. Grouping among Fusarium strains derived from restriction analysis was in agreement with criteria used in morphological classification. Therefore, the PCR-ITS-RFLP method provides a simple and rapid procedure for the differentiation of Fusarium strains at species level. This is the first report on identification and pathogenicity of major plant pathogenic Fusarium spp. causing root and stem rot on cucurbits in Iran.
Fulltext In vitro and in silico studies of the potential cytotoxic, antioxidant, and HMG CoA reductase inhibitory effects of chitin from Indonesia mangrove crab (Scylla serrata) shells

Fajriaty I, Fidrianny I, Kurniati NF, Fauzi NM, Mustafa SH, Adnyana IK

Saudi J Biol Sci, 2024 May;31(5):103964.
PMID: 38500815 DOI: 10.1016/j.sjbs.2024.103964

This study aimed to characterize chitin extracted from Indonesia mangrove crab (Scylla serrata) shells, as well as to assess its in vitro cytotoxic, antioxidant, and HMG CoA reductase inhibitory potentials. In silico molecular docking, molecular dynamic, and ADMET prediction analyses were also carried out. Chitin was extracted from mangrove crab shells using deproteination and demineralization processes, Scanning Electron Microscopy (SEM) and Fourier Transform Infrared (FTIR) characterization are then performed. The MTT method was further tested in a study of cell viability, while in vitro method was used to assess HMG CoA reductase inhibitory and antioxidant activities. The extracted chitin was found to have a moderate level of cytotoxic and antioxidant activities. In vitro studies showed that it has an IC50 of 36,65 ± 0,082 μg/mL as an HMG CoA reductase inhibitor, and decreased enzyme activity by 68.733 % at 100 μg/mL as a concentration. Furthermore, in the in silico study, chitin showed a strong affinity to several targets, including HMG CoA reductase, HMG synthase, LDL receptor, PPAR-alfa, and HCAR-2 with binding energies of -5.7; -5.8; -3.6; -5.6; -4.6 kcal/mol, respectively. Based on the ADMET properties, it had non-toxic molecules, which were absorbed and distributed across the blood-brain barrier. The molecular dynamics (MD) simulation also showed that it remained stable in the active sites of HMG CoA reductase receptor for 100 ns. These results indicated that chitin from Indonesian mangrove crab shells can be used to develop more potent HMG CoA reductase inhibitor with antioxidant and cytotoxic activities for effective dyslipidemia therapy.
Fulltext Computational drug screening against the SARS-CoV-2 Saudi Arabia isolates through a multiple-sequence alignment approach

Mok PL, Koh AE, Farhana A, Alsrhani A, Alam MK, Suresh Kumar S

Saudi J Biol Sci, 2021 Apr;28(4):2502-2509.
PMID: 33551661 DOI: 10.1016/j.sjbs.2021.01.051

COVID-19 is a rapidly emerging infectious disease caused by the SARS-CoV-2 virus currently spreading throughout the world. To date, there are no specific drugs formulated for it, and researchers around the globe are racing against the clock to investigate potential drug candidates. The repurposing of existing drugs in the market represents an effective and economical strategy commonly utilized in such investigations. In this study, we used a multiple-sequence alignment approach for preliminary screening of commercially-available drugs on SARS-CoV sequences from the Kingdom of Saudi Arabia (KSA) isolates. The viral genomic sequences from KSA isolates were obtained from GISAID, an open access repository housing a wide variety of epidemic and pandemic virus data. A phylogenetic analysis of the present 164 sequences from the KSA provinces was carried out using the MEGA X software, which displayed high similarity (around 98%). The sequence was then analyzed using the VIGOR4 genome annotator to construct its genomic structure. Screening of existing drugs was carried out by mining data based on viral gene expressions from the ZINC database. A total of 73 hits were generated. The viral target orthologs were mapped to the SARS-CoV-2 KSA isolate sequence by multiple sequence alignment using CLUSTAL OMEGA, and a list of 29 orthologs with purchasable drug information was generated. The results showed that the SARS CoV replicase polyprotein 1a had the highest sequence similarity at 79.91%. Through ZINC data mining, tanshinones were found to have high binding affinities to this target. These compounds could be ideal candidates for SARS-CoV-2. Other matches ranged between 27 and 52%. The results of this study would serve as a significant endeavor towards drug discovery that would increase our chances of finding an effective treatment or prevention against COVID19.
Fulltext Recombinant Human erythropoietin reduces viability of MCF-7 breast cancer cells from 3D culture without caspase activation

ShujaaEdin HY, Al-Haj NA, Rasedee A, Alitheen NB, Kadir AA, How CW, et al.

Saudi J Biol Sci, 2021 Apr;28(4):2549-2557.
PMID: 33935571 DOI: 10.1016/j.sjbs.2021.01.059

Recombinant human erythropoietin (rHuEPO) is the erythropoiesis-stimulating hormone that is being used concurrently with chemotherapeutic drugs in the treatment of anemia of cancer. The effect of rHuEPO on cancer cells in 3-dimensional (3D) cultures is not known. The objective of the study was to determine the effect of rHuEPO on the viability of MCF-7 breast cancer cells from 2-dimensional (2D) and 3D cell cultures. The monolayer MCF-7 cells from 2D culture and MCF-7 cell from 3D culture generated by ultra-low adhesive microplate technique, were treated with 0, 0.1, 10, 100 or 200 IU/mL rHuEPO for 24, 48 or 72 h. The effects of rHuEPO on MCF-7 cell viability and proliferation were determined using the (4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide assay (MTT), neutral red retention time (NRRT), trypan blue exclusion assay (TBE), DNA fragmentation, acridine orange/propidium iodide staining (AO/PI) assays. The MCF-7 cells for 3D culture were also subjected to caspase assays and cell cycle analysis using flow cytometry. rHuEPO appeared to have greater effect at lowering the viability of MCF-7 cells from 3D than 2D cultures. rHuEPO significantly (p
Fulltext Animal cloning and consumption of its by-products: A scientific and Islamic perspectives

Kashim MIAM, Hasim NA, Zin DMM, Amin L, Mokhtar MH, Shahimi S, et al.

Saudi J Biol Sci, 2021 May;28(5):2995-3000.
PMID: 34025177 DOI: 10.1016/j.sjbs.2021.02.040

Islam is a religion that inspires its followers to seek knowledge continually and nurtures innovation, within the realms of Islamic rulings, towards an ameliorated quality of life. Up-to-date biotechnological techniques, specifically animal cloning, are involved in advancing society's health, social, and economic domains. The goal of animal cloning includes the production of genetically modified animal for human consumption. Therefore, this research endeavoured to study animal cloning's current scientific findings, examine the by-product of said process, and determine its permissibility in an Islamic context. This study employed descriptive literature reviews. Results concluded that animal cloning, especially in mammals, does not occur naturally as in plants. A broadly trusted and efficient animal cloning method is known as Somatic Cell Nuclear Transfer (SCNT), which includes three principal steps: oocyte enucleation; implantation of donor cells (or nucleus); and the activation of the embryo. Nevertheless, the limitations of SCNT, particularly to the Large Offspring Syndrome (LOS), should be noted. One of the forms of the application of animal cloning is in agriculture. From an Islamic perspective, determining the permissibility of consuming cloned animals as food is essentially based on whether the cloned animal conforms to Islamic law's principles and criteria. Islam interdicts animal cloning when it is executed without benefiting humans, religion, or society. Nonetheless, if it is done to preserve the livelihood and the needs of a community, then the process is deemed necessary and should be administered following the conditions outlined in Islam. Hence, the Islamic ruling for animal cloning is not rigid and varies proportionately with the current fatwa.
Fulltext Urethrographic examinations: Patient and staff exposures and associated radiobiological risks

Alkhorayef M, Sulieman A, Barakat H, Al-Mohammed HI, Theodorou K, Kappas C, et al.

Saudi J Biol Sci, 2021 Jan;28(1):35-39.
PMID: 33424280 DOI: 10.1016/j.sjbs.2020.08.026

Medical exposure of the general population due to radiological investigations is the foremost source of all artificial ionising radiation. Here, we focus on a particular diagnostic radiological procedure, as only limited data are published with regard to radiation measurements during urethrograpic imaging. Specifically, this work seeks to estimate patient and occupational effective doses during urethrographic procedures at three radiology hospitals. Both staff and patient X-ray exposure levels were calculated in terms of entrance surface air kerma (ESAK), obtained by means of lithium fluoride thermoluminescent dosimeters (TLD-100(LiF:Mg:Cu.P)) for 243 urethrographic examinations. Patient radiation effective doses per procedure were estimated using conversion factors obtained from the use of Public Health England computer software. In units of mGy, the median and range of ESAK per examination were found to be 10.8 (3.6-26.2), 7.0 (0.2-32.3), and 24.3 (9.0-32.0) in Hospitals A, B, and C, respectively. The overall mean and range of staff doses (in µGy) were found to be 310 (4.0-1750) per procedure. With the exception of hospital C, the present evaluations of radiation dose have been found to be similar to those of previously published research. The wide range of patient and staff doses illustrate the need for radiation dose optimisation.
Fulltext Bioassay studies on the reaction of Aedes aegypti & Aedes albopictus (Diptera: Culicidae) on different attractants

Nur Athen MH, Nazri CD, Siti Nazrina C

Saudi J Biol Sci, 2020 Oct;27(10):2691-2700.
PMID: 32994728 DOI: 10.1016/j.sjbs.2020.06.016

BACKGROUND: The studies on mosquito attractants had been develop intensively in the recent years. However, the study on fruit peel extract as mosquito attractant was scarce, even though various fruits had demonstrated the ability to attract different types of mosquito species.
OBJECTIVE: This study aims to determine the potential of Carica papaya (papaya) and Ananas comosus (pineapple) peel extracts to attract Aedes albopictus and Aedes aegypti.
METHODS: The Aedes mosquitoes response to the fruit peel extracts were conducted in the no-choice and choice assay using modified olfactometer. The Preference Index (PI) in each assay was calculated and arcsine transformed before conducting independent t-test to determine the significant different between the mean arcsine transformed PI and the tested hypothesis mean PI.
RESULT: No choice assay indicate both Aedes species have significant attraction to the papaya and pineapple peel extracts (p  0.05) while Ae. aegypti is significantly attracted to the papaya peel extract (p 
Fulltext Mechanical characteristics of antibacterial epoxy resin adhesive wood biocomposites against skin disease

Chen ZX, Zhang ZF, Aqma WS

Saudi J Biol Sci, 2016 Jan;23(1):S126-36.
PMID: 26858557 DOI: 10.1016/j.sjbs.2015.09.026

Moldy wood can cause some skin disease. However epoxy resin adhesive (EP) can inhibit mold growth. Therefore, antibacterial EP/wood biocomposites were reinforced and analyzed by the nonlinear finite element. Results show that glass fiber cloth and aluminum foil have the obvious reinforced effect under flat pressure, but this was not the case under side pressure. And when the assemble pattern was presented in 5A way, the strengthening effect was better. The nonlinear finite element showed that the aluminum foil and glass fiber cloth have the obvious reinforced effect. The mutual influence and effect of span, thickness and length on the ultimate bearing capacity of specimen were studied. And the simulation results agreed with the test. It provided a theoretical basis on the preparation of antibacterial EP/wood biocomposites against skin disease.
Fulltext Review on antibacterial biocomposites of structural laminated veneer lumber

Chen ZX, Lei Q, He RL, Zhang ZF, Chowdhury AJ

Saudi J Biol Sci, 2016 Jan;23(1):S142-7.
PMID: 26858559 DOI: 10.1016/j.sjbs.2015.09.025

In this review, the characteristics and applications of structural laminated veneer lumber made from planted forest wood is introduced, and its preparation is explained, including various tree species and slab qualities, treatments for multiple effects and reinforced composites. The relevant factors in the bonding technology and pressing processes as well as the mechanical properties, research direction and application prospects of structural laminated veneer lumber made from planted forest wood are discussed.
Fulltext Physio-chemical characterization of indigenous agricultural waste materials for the development of potting media

Kiran S, Iqbal J, Danish S, Bakhsh A, Bukhari SIUS, Bibi F, et al.

Saudi J Biol Sci, 2021 Dec;28(12):7491-7498.
PMID: 34867054 DOI: 10.1016/j.sjbs.2021.08.058

Organic residues are an important factor that directly affects fruiting tree seedlings' health at earlier stages. It provides a suitable environment for seedling growth by providing better nutrient ions, water, and aeration. However, low organic contents and high shrinkage of most organic materials mostly deteriorate ideal potting media characteristics. Low aeration, high water, and nutrients leaching decrease seedling growth and cause a significant loss of valuable resources. That is why the current study was conducted to screen out the best indigenous materials based on particle size to produce good characteristics bearing potting media. For that, eight different ingredients, i.e., "sugarcane", "coconut coir", "wheat straw", "rice straw", "corn cob", "leaf litter", "farmyard manure", and "sunflower heads" were collected. Initially, all the materials were air-dried and processes as per requirement. After grinding, three particles size (fine = < 2 mm, medium = 3 mm and coarse = 5 mm) were separated by sieving. Results showed that decreasing particle size in "rice straw", "corn cob", "farmyard manure," and "sunflower head" decreased leachate pH. Higher EC in leachates was negatively correlated with particle size in all potting media ingredients. Except for farmyard manure, fine particle size increases the water-holding ability of potting media ingredients. However, air-filled porosity was associated with a decrease in particle size of potting media in gradients. In conclusion, farmyard manure, "sunflower heads", "leaf litter" and "sugarcane" should be incorporated while making a combination for potting media. More investigations are suggested by mixing different particle size ingredients to prepare potting media.
Fulltext Effect of feeding pineapple waste on growth performance, texture quality and flesh colour of nile tilapia (Oreochromis niloticus) fingerlings

Anis Mohamad Sukri S, Andu Y, Tuan Harith Z, Sarijan S, Naim Firdaus Pauzi M, Seong Wei L, et al.

Saudi J Biol Sci, 2022 Apr;29(4):2514-2519.
PMID: 35531242 DOI: 10.1016/j.sjbs.2021.12.027

The study aims to evaluate the effects of pineapples waste on the growth, texture quality and flesh colour of Nile tilapia (Oreochromis niloticus) fingerlings. Fingerlings were fed with four different levels of pineapple waste diets throughout 56 days, which contain a control group (Diet 1) and experimental diets that formulated with 10% (Diet 2), 20% (Diet 3) and 30% (Diet 4) of pineapple waste. The experimental diet was formulated with rice bran, fish meal, soybean meal, vitamin and mineral premix, vegetable oil and binder to attain 32% dietary protein. The results revealed that the formulated fish diet with pineapple waste given the optimum weight gain, weight gain percentage, specific growth rate than the control group, where Diet 4 has shown the highest value (p
Fulltext Seminal exosomes - An important biological marker for various disorders and syndrome in human reproduction

Vickram AS, Srikumar PS, Srinivasan S, Jeyanthi P, Anbarasu K, Thanigaivel S, et al.

Saudi J Biol Sci, 2021 Jun;28(6):3607-3615.
PMID: 34121904 DOI: 10.1016/j.sjbs.2021.03.038

BACKGROUND: Exosomes are nano-sized membrane vesicles, secreted by different types of cells into the body's biological fluids. They are found in abundance in semen as compared to other fluids. Exosomes contain a cargo of lipid molecules, proteins, phospholipids, cholesterol, mRNAs, and miRNAs. Each molecule of seminal exosomes (SE) has a potential role in male reproduction for childbirth. Many potential candidates are available within the seminal exosomes that can be used as diagnostic markers for various diseases or syndromes associated with male reproduction. Also these seminal exospmes play a major role in female reproductive tract for effective fertilization.
AIM: The aim of this review is to focus on the advancement of human seminal exosomal research and its various properties.
METHODS: We used many databases like Scopus, Google scholar, NCBI-NLM and other sources to filter the articles of interest published in exosomes. We used phrases like "Exosomes in human semen", "Composition of exosomes in human semen" and other relevant words to filter the best articles.
RESULTS: Seminal exosomes play a major role in sperm functions like cell-to-cell communication, motility of the sperm cells, maintaining survival capacity for the sperm in the female reproductive tract and spermatogenesis. Also, seminal exosomes are used as a carrier for many regulatory elements using small RNA molecules. miRNAs of the seminal exosomes can be used as a diagnostic marker for prostate cancer instead of prostate specific antigen (PSA). Epididymosomes can be used as a biomarker for reproductive diseases and male infertility.
CONCLUSION: Seminal exosomes could be used as biological markers for various reproductive disorders, male infertility diagnosis, and it can be used in anti-retroviral research for the identification of novel therapeutics for HIV-1 infection and transmission.
Fulltext Biochar and Arbuscular mycorrhizal fungi mediated enhanced drought tolerance in Okra (Abelmoschus esculentus) plant growth, root morphological traits and physiological properties

Jabborova D, Annapurna K, Al-Sadi AM, Alharbi SA, Datta R, Zuan ATK

Saudi J Biol Sci, 2021 Oct;28(10):5490-5499.
PMID: 34588859 DOI: 10.1016/j.sjbs.2021.08.016

Drought is a major abiotic factor limiting plant growth and crop production. There is limited information on effect of interaction between biochar and Arbuscular mycorrhizal fungi (AMF) on okra growth, root morphological traits and soil enzyme activities under drought stress. We studied the influence of biochar and AMF on the growth of Okra (Abelmoschus esculentus) in pot experiments in a net house under drought condition. The results showed that the biochar treatment significantly increased plant growth (the plant height by 14.2%, root dry weight by 30.0%) and root morphological traits (projected area by 22.3% and root diameter by 22.7%) under drought stress. In drought stress, biochar treatment significantly enhanced the chlorophyll 'a' content by 32.7%, the AMF spore number by 22.8% and the microbial biomass as compared to the control. Plant growth parameters such as plant height, shoot and root dry weights significantly increased by AMF alone, by 16.6%, 21.0% and 40.0% respectively under drought condition. Other plant biometrics viz: the total root length, the root volume, the projected area and root diameter improved significantly with the application of AMF alone by 38.3%, 60.0%,16.8% and 15.9% respectively as compared with control. Compared to the control, AMF treatment alone significantly enhanced the total chlorophyll content by 36.6%, the AMF spore number by 39.0% and the microbial biomass by 29.0% under drought condition. However, the highest values of plant growth parameters (plant height, shoot dry weight, root dry weight) and root morphological traits (the total root length, root volume, projected area, root surface area) were observed in the combined treatment of biochar and AMF treatment viz: 31.9%, 34.2%, 60.0% and 68.6%, 66.6%, 45.5%, 41.8%, respectively compared to the control under drought stress. The nitrogen content, total chlorophyll content and microbial biomass increased over un-inoculated control. The soil enzymes; alkaline phosphatase, dehydrogenase and fluorescein diacetate enzyme activities significantly increased in the combined treatment by 55.8%, 68.7% and 69.5%, respectively as compared to the control under drought stress. We conclude that biochar and AMF together is potentially beneficial for cultivation of okra in drought stress conditions.
Fulltext Interleukin-35 and Thymoquinone nanoparticle-based intervention for liver protection against paracetamol-induced liver injury in rats

Abduh MS, Saghir SAM, Al-Gabri NA, Ahmeda AF, Abdelkarim M, Aldaqal SM, et al.

Saudi J Biol Sci, 2023 Oct;30(10):103806.
PMID: 37766887 DOI: 10.1016/j.sjbs.2023.103806

Paracetamol (PAR) is a commonly used antipyretic and analgesic agent, but its excessive usage can induce liver damage and major health consequences. Interleukin-35 (IL-35) is utilized to treat immunological disorders, intestinal illness, arthritis, allergic disease, hepatitis, and cancer. Thymoquinone (THYO) is also effective against a wide range of disorders. Consequently, this study sought out to explore the ameliorative effects of IL-35 and THYO against PAR-induced hepatotoxicity in rats. Sixty male rats were separated into six groups (10 rats/group): I control (0.5 mL NaCl, 0.9%/rat via oral gavage); II (IL-35), and III (TYHO) received intraperitoneal (i.p) injection of IL-35 (200 ng/kg) or THYO (0.5 mg/kg), respectively. Group IV (PAR) received 600 mg/kg of PAR orally; V (PAR + IL-35) and VI (PAR + TYHO); rats received 600 mg/kg of PAR orally and i.p injection of IL-35 (200 ng/kg) or THYO (0.5 mg/kg), respectively. Administration of IL-35 or THYO markedly mitigated the increasing in the levels of liver parameters triggered by PAR and noticeable enhancement of antioxidant and immunological markers were observed. Additionally, IL-35 or THYO decreased TNF-α, NF-κB, IL-10, IL-6 and IFN-γ in contrast to the PAR control group. Moreover, levels of Capase-3, and cytochrome C were significantly reduced by THYO or IL35, while, levels of Bcl-2 were markedly increased. Furthermore, significant downregulation of IL1-β, TNF-α, TGF-β, and Caspas-3 genes, as well as significant upregulation of Bcl-2 and IL-10 expression were detected. In conclusion, IL-35 and THYO insulated liver from PAR toxicity by mitigating oxidative stress, tissue damage, inflammation, and apoptosis.
Fulltext Botanicals against some important nematodal diseases: Ascariasis and hookworm infections

Ramlal A, Nautiyal A, Kumar J, Mishra V, Sogan N, Nasser B Singab A

Saudi J Biol Sci, 2023 Nov;30(11):103814.
PMID: 37841664 DOI: 10.1016/j.sjbs.2023.103814

Ascariasis and intestinal parasitic nematodes are the leading cause of mass mortality infecting many people across the globe. In light of the various deleterious side effects of modern chemical-based allopathic drugs, our preferences have currently shifted towards the use of traditional plant-based drugs or botanicals for treating diseases. The defensive propensities in the botanicals against parasites have probably evolved during their co-habitation with parasites, humans and plants in nature and hence their combative interference in one another's defensive mechanisms has occurred naturally ultimately being very effective in treating diseases. This article broadly outlines the utility of plant-based compounds or botanicals prepared from various medicinal herbs that have the potential to be developed as effective therapies against the important parasites causing ascariasis and intestinal hookworm infections leading to ascariasis & infections and thereby human mortality, wherein allopathic treatments are less effective and causes enormous side-effects.
Fulltext Identification of key biomarkers and associated pathways of pancreatic cancer using integrated transcriptomic and gene network analysis

Rambabu M, Konageni N, Vasudevan K, Dasegowda KR, Gokul A, Jayanthi S, et al.

Saudi J Biol Sci, 2023 Nov;30(11):103819.
PMID: 37860809 DOI: 10.1016/j.sjbs.2023.103819

Pancreatic cancer shows malignancy around the world standing in 4th position for causing death globally. This cancer is majorly divided into exocrine and neuroendocrine where exocrine pancreatic ductal adenocarcinoma is observed to be nearly 85% of cases. The lack of diagnosis of pancreatic cancer is considered to be one of the major drawbacks to the prognosis and treatment of pancreatic cancer patients. The survival rate after diagnosis is very low, due to the higher incidence of drug resistance to cancer which leads to an increase in the mortality rate. The transcriptome analysis for pancreatic cancer involves dataset collection from the ENA database, incorporating them into quality control analysis to the quantification process to get the summarized read counts present in collected samples and used for further differential gene expression analysis using the DESeq2 package. Additionally, explore the enriched pathways using GSEA software and represented them by utilizing the enrichment map finally, the gene network has been constructed by Cytoscape software. Furthermore, explored the hub genes that are present in the particular pathways and how they are interconnected from one pathway to another has been analyzed. Finally, we identified the CDKN1A, IL6, and MYC genes and their associated pathways can be better biomarker for the clinical processes to increase the survival rate of of pancreatic cancer.
Fulltext Efficacy of encapsulated biogenic silver nanoparticles and its disease resistance against Vibrio harveyi through oral administration in Macrobrachium rosenbergii

Thanigaivel S, Thomas J, Vickram AS, Anbarasu K, Karunakaran R, Palanivelu J, et al.

Saudi J Biol Sci, 2021 Dec;28(12):7281-7289.
PMID: 34867032 DOI: 10.1016/j.sjbs.2021.08.037

Biological synthesis of silver nanoparticles (AgNPs) by Cheatomorpha antennia and its in vitro and in vivo antibacterial activity against Vibrio harveyi in Macrobrachium rosenbergii was demonstrated in the study. In vitro growth curve analysis, cell viability and bacterial inhibitory assays were performed to test the efficacy of synthesised AgNPs against bacteria. Sodium caseinate was used as an encapsulating agent to deliver the antibacterial drugs and the commercial process of microencapsulation comprises the antibacterial bioelements for oral administration to improve the disease resistance of AgNPs against V. harveyi due to the eco-friendly for non-toxic behaviour of nanoparticle and their treatment. Characterisation of antibacterial silver was performed by UV spectroscopy, X-ray diffraction, Fourier Transform Infrared spectroscopy and Scanning Electron Microscopy. The peak at 420 nm showed the presence of nanoparticles in the solution and the crystal nature of the particle was identified by the XRD. FTIR characterised the functional harveyi biomolecules and further SEM confirmed the size of the nanoparticles around 24 ± 2.4 nm. Experimental pathogenicity of V. harveyi showed 100% mortality at the 120th hour. Treatment of encapsulated AgNPs was administered orally for the relative percentage of survival which acquired almost 90% of survival till 30 days of exposure. In conclusion, the microencapsulation of AgNPs in the biopolymer matrices promotes the health, growth responses, immunity and disease resistance of encapsulated AgNPs with an improved relative percentage of survival.
Fulltext Anti-aging and antioxidant of four traditional malaysian plants using simplex centroid mixture design approach

Ranneh Y, Abu Bakar MF, Ismail NA, Kormin F, Mohamed M, Md Akim A, et al.

Saudi J Biol Sci, 2021 Dec;28(12):6711-6720.
PMID: 34866970 DOI: 10.1016/j.sjbs.2021.07.048

Aging is a naturally biological process with adverse effects. The continuous accumulation of reactive oxygen species (ROS) trigger cellular and tissue damage by activating several aging enzymes. The antioxidant properties of traditional medicinal plants used by Jakun aborigine's community are a promising approach to alleviate aging process and prevent Alzheimer. The aim of the current investigation was to optimize a novel anti-aging formulation from traditional plants (Cnestis palala stem, Urceola micrantha stem, Marantodes pumilum stem and Microporus xanthopus fruiting bodies) using simplex centroid mixture design (SCMD). After selecting the optimal formulations based on desirability function of antioxidant activity (DPPḢ, ABTS ˙ + and FRAP), they were further examined against the activity of aging-related-enzymes (collagenase, tyrosinase, acetyl- and butyrylcholinesterase). The single extracts of C. palala, U. micrantha and the binary mixture of C. palala and U. micrantha were the optimal formulations with high antioxidant activities. Single extract of U. micrantha showed the highest inhibition towards matrix metalloproteinase-1 (49.44 ± 4.11 %), while C. palala water extract showed highest inhibitions towards tyrosinase (14.06 ± 0.31%), acetylcholinesterase (32.92 ± 2.13%) and butyrylcholinesterase (34.89 ± 2.84%) enzymes. The single extracts of C. palala and U. micrantha displayed better activity as compared to the binary mixture formulation. In conclusion, these findings could be a baseline for further exploration of novel anti-aging agents from natural resources.
Fulltext Hepatitis E Virus: An emerging enigmatic and underestimated pathogen

Raji YE, Toung OP, Taib NM, Sekawi ZB

Saudi J Biol Sci, 2022 Jan;29(1):499-512.
PMID: 35002446 DOI: 10.1016/j.sjbs.2021.09.003

Hepatitis E virus (HEV) is an RNA virus causing hepatitis E disease. The virus is of one serotype but has diverse genotypes infecting both humans and animals. Based on evidence from seroprevalence studies, about 2 billion people are estimated to have been infected with HEV globally. HEV, therefore, poses a significant public health and economic challenge worldwide. HEV was discovered in the 1980s and was traced back to the 1955 - 1956 outbreak of hepatitis that occurred in India. Subsequently, several HEV epidemics involving thousands of individuals have occurred nearly annually in different countries in Asia and Africa. Initially, the virus was thought to be only enterically transmitted, and endemic in developing countries. Due to the environmental hygiene and sanitation challenges in those parts of the world. However, recent studies have suggested otherwise with the report of autochthonous cases in industrialised countries with no history of travel to the so-called endemic countries. Thus, suggesting that HEV has a global distribution with endemicity in both developing and industrialised nations. Studies have also revealed that HEV has multiple risk factors, and modes of transmission as well as zoonotic potentials. Additionally, recent findings have shown that HEV leads to severe disease, particularly among pregnant women. In contrast to the previous narration of a strictly mild and self-limiting infection. Studies have likewise demonstrated chronic HEV infection among immunocompromised persons. Consequent to these recent discoveries, this pathogen is considered a re - emerging virus, particularly in the developed nations. However, despite the growing public health challenges of this pathogen, the burden is still underestimated. The underestimation is often attributed to poor awareness among clinicians and a lack of routine checks for the disease in the hospitals. Thus, leading to misdiagnosis and underdiagnosis. Hence, this review provides a concise overview of epidemiology, diagnosis, and prevention of hepatitis E.
Fulltext Improvement of efficient in vitro regeneration potential of mature callus induced from Malaysian upland rice seed (Oryza sativa cv. Panderas)

Mohd Din AR, Iliyas Ahmad F, Wagiran A, Abd Samad A, Rahmat Z, Sarmidi MR

Saudi J Biol Sci, 2016 Jan;23(1):S69-77.
PMID: 26858569 DOI: 10.1016/j.sjbs.2015.10.022

A new and rapid protocol for optimum callus production and complete plant regeneration has been assessed in Malaysian upland rice (Oryza sativa) cv. Panderas. The effect of plant growth regulator (PGR) on the regeneration frequency of Malaysian upland rice (cv. Panderas) was investigated. Mature seeds were used as a starting material for callus induction experiment using various concentrations of 2,4-D and NAA. Optimal callus induction frequency at 90% was obtained on MS media containing 2,4-D (3 mg L(-1)) and NAA (2 mg L(-1)) after 6 weeks while no significant difference was seen on tryptophan and glutamine parameters. Embryogenic callus was recorded as compact, globular and light yellowish in color. The embryogenic callus morphology was further confirmed with scanning electron microscopy (SEM) analysis. For regeneration, induced calli were treated with various concentrations of Kin (0.5-1.5 mg L(-1)), BAP, NAA and 0.5 mg L(-1) of TDZ. The result showed that the maximum regeneration frequency (100%) was achieved on MS medium containing BAP (0.5 mg L(-1)), Kin (1.5 mg L(-1)), NAA (0.5 mg L(-1)) and TDZ (0.5 mg L(-1)) within four weeks. Developed shoots were successfully rooted on half strength MS free hormone medium and later transferred into a pot containing soil for acclimatization. This cutting-edge finding is unique over the other existing publishable data due to the good regeneration response by producing a large number of shoots.

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