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  1. Ryan PG
    Mar Pollut Bull, 2013 Apr 15;69(1-2):128-36.
    PMID: 23415747 DOI: 10.1016/j.marpolbul.2013.01.016
    A size and distance-based technique was used to assess the distribution, abundance and composition of floating marine debris in the northeast Indian Ocean. Densities of floating litter (>1 cm) were greater and more variable in the Straits of Malacca (578±219 items km(-2)) than in oceanic waters of the Bay of Bengal (8.8±1.4 items km(-2)). The density of debris in the Straits was correlated with terrestrial vegetation, and peaked close to urban centres, indicating the predominance of land-based sources. In the Bay of Bengal, debris density increased north of 17°N mainly due to small fragments probably carried in run-off from the Ganges Delta. The low densities in the Bay of Bengal relative to model predictions may result from biofouling-induced sinking and wind-driven export of debris items. Standardised data collection protocols are needed for counts of floating debris, particularly as regards the size classes used, to facilitate comparisons among studies.
  2. Ryan PG, Pichegru L, Connan M
    Mar Pollut Bull, 2024 Apr;201:116186.
    PMID: 38402698 DOI: 10.1016/j.marpolbul.2024.116186
    Water and soft drink bottles made from polyethylene terephthalate (PET) sink at sea unless they contain trapped air, whereas their lids are made from polymers that float and can drift long distances. We sampled loose lids and bottles at 21 South African beaches to compare their origins. The proportions of foreign-made bottles and lids were correlated, and increased away from urban centres, indicating that much land-based litter strands close to source areas. Over 80 % of foreign-made drink bottles and 90 % of lids came from Asia, but most bottles were manufactured in China, Malaysia-Singapore and the UAE, and were dumped from ships. By comparison, most loose lids were in poor condition after being carried across the Indian Ocean from Indonesia by the South Equatorial Current. Reducing PET drink bottles at sea requires enforcement of regulations banning dumping at sea, whereas reducing their lids requires better control of littering in source countries.
  3. Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, et al.
    Nature, 2021 Apr;592(7856):E24.
    PMID: 33833441 DOI: 10.1038/s41586-021-03473-8
  4. Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, et al.
    Nature, 2020 11;587(7833):252-257.
    PMID: 33177665 DOI: 10.1038/s41586-020-2873-9
    Whole-genome sequencing projects are increasingly populating the tree of life and characterizing biodiversity1-4. Sparse taxon sampling has previously been proposed to confound phylogenetic inference5, and captures only a fraction of the genomic diversity. Here we report a substantial step towards the dense representation of avian phylogenetic and molecular diversity, by analysing 363 genomes from 92.4% of bird families-including 267 newly sequenced genomes produced for phase II of the Bird 10,000 Genomes (B10K) Project. We use this comparative genome dataset in combination with a pipeline that leverages a reference-free whole-genome alignment to identify orthologous regions in greater numbers than has previously been possible and to recognize genomic novelties in particular bird lineages. The densely sampled alignment provides a single-base-pair map of selection, has more than doubled the fraction of bases that are confidently predicted to be under conservation and reveals extensive patterns of weak selection in predominantly non-coding DNA. Our results demonstrate that increasing the diversity of genomes used in comparative studies can reveal more shared and lineage-specific variation, and improve the investigation of genomic characteristics. We anticipate that this genomic resource will offer new perspectives on evolutionary processes in cross-species comparative analyses and assist in efforts to conserve species.
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