Affiliations 

  • 1 Department of Smart Computing, Kyungdong University, Global Campus, 46 4-gil, Gosung, Gangwondo 24764, Republic of Korea
  • 2 Faculty of Computer and Information Technology, Al-Madinah International University, 2 Jalan Tengku Ampuan Zabedah E/9E, 40100 Shah Alam, Selangor, Malaysia
  • 3 Department of Computer & Information Engineering, Dongseo University, 47 Jurye-ro, Sasang-gu, Busan 47011, Republic of Korea
Biomed Res Int, 2018;2018:7501042.
PMID: 30417014 DOI: 10.1155/2018/7501042

Abstract

MapReduce is the preferred cloud computing framework used in large data analysis and application processing. MapReduce frameworks currently in place suffer performance degradation due to the adoption of sequential processing approaches with little modification and thus exhibit underutilization of cloud resources. To overcome this drawback and reduce costs, we introduce a Parallel MapReduce (PMR) framework in this paper. We design a novel parallel execution strategy of Map and Reduce worker nodes. Our strategy enables further performance improvement and efficient utilization of cloud resources execution of Map and Reduce functions to utilize multicore environments available with computing nodes. We explain in detail makespan modeling and working principle of the PMR framework in the paper. Performance of PMR is compared with Hadoop through experiments considering three biomedical applications. Experiments conducted for BLAST, CAP3, and DeepBind biomedical applications report makespan time reduction of 38.92%, 18.00%, and 34.62% considering the PMR framework against Hadoop framework. Experiments' results prove that the PMR cloud computing platform proposed is robust, cost-effective, and scalable, which sufficiently supports diverse applications on public and private cloud platforms. Consequently, overall presentation and results indicate that there is good matching between theoretical makespan modeling presented and experimental values investigated.

* Title and MeSH Headings from MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.