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  1. Yusuf Chong Yu Lok, Idris Abu Seman, Nor Aini Ab Shukor, Mohd Norfaizull Mohd Nor, Mohd Puad Abdullah
    Sains Malaysiana, 2018;47:1709-1723.
    The empty fruit bunches of oil palm have been used as the raw material to produce biofuel. However, the lignin present
    in oil palm tissues hampers the enzymatic saccharification of lignocellulosic biomass and lower the yield of biofuel
    produced. Hence, various efforts were taken to identify the lignin biosynthetic genes in oil palm and to investigate
    their regulation at the molecular level. In this study, a lignin biosynthetic gene, Eg4CL1 and its promoter were isolated
    from the oil palm. Eg4CL1 contains the acyl-activating enzyme consensus motif and boxes I & II which are present in
    other 4CL homologs. Eg4CL1 was clustered together with known type I 4CL proteins involved in lignin biosynthesis in
    other plants. Gene expression analysis showed that Eg4CL1 was expressed abundantly in different organs of oil palm
    throughout the course of development, reflecting its involvement in lignin biosynthesis in different organs at all stages
    of growth. The presence of the lignification toolbox - AC elements in the 1.5 kb promoter of Eg4CL1 further suggests the
    potential role of the gene in lignin biosynthesis in oil palm. Together, these results suggested that Eg4CL1 is a potential
    candidate gene involved in lignin biosynthesis in oil palm.
  2. Nawawi O, Abdullah MP, Yusuf CYL
    3 Biotech, 2023 Jul;13(7):224.
    PMID: 37292140 DOI: 10.1007/s13205-023-03647-3
    Positive selection vectors carry a lethal gene encoding a toxic product that is harmful to most laboratory E. coli strains. Previously, we reported a strategy for in-house production of a commercial positive selection vector, the pJET1.2/blunt cloning vector, using common laboratory E. coli strains. However, the strategy involves lengthy gel electrophoresis and extraction procedures to purify the linearized vector after digestion. Here, we streamlined the strategy to eliminate the gel-purification step. A uniquely designed short fragment called the Nawawi fragment was inserted into the coding sequence of the lethal gene of the pJET1.2 plasmid, resulting in the pJET1.2N plasmid that can be propagated in the E. coli strain DH5α. Digestion of the pJET1.2N plasmid with EcoRV released the Nawawi fragment, and the resulting blunt-ended pJET1.2/blunt cloning vector can be used directly for DNA cloning without prior purification. Cloning of a DNA fragment was not hindered by the Nawawi fragments carried over from the digestion step. After transformation, the pJET1.2N-derived pJET1.2/blunt cloning vector produced > 98% positive clones. The streamlined strategy accelerates the in-house production of the pJET1.2/blunt cloning vector and enables DNA cloning at a lower cost.

    SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s13205-023-03647-3.

  3. Ab'lah N, Yusuf CYL, Rojsitthisak P, Wong TW
    Int J Biol Macromol, 2023 Jun 30;241:124506.
    PMID: 37085071 DOI: 10.1016/j.ijbiomac.2023.124506
    Starch is a polysaccharide with varying amylose-to-amylopectin ratios as a function of its biological sources. It is characterized by low shear stress resistance, poor aqueous/organic solubility and gastrointestinal digestibility which limit its ease of processing and functionality display as an oral drug delivery vehicle. Modulation of starch composition through genetic engineering primarily alters amylose-to-amylopectin ratio. Greater molecular properties changes require chemical and enzymatic modifications of starch. Acetylation reduces water solubility and enzymatic digestibility of starch. Carboxymethylation turns starch acid-insoluble and aggregative at low pHs. The summative effects are sustaining drug release in the upper gut. Acid-insoluble carboxymethylated starch can be aminated to provide an ionic character essential for hydrogel formation which further reduces its drug release. Ionic starch can coacervate with oppositely charged starch, non-starch polyelectrolyte or drug into insoluble, controlled-release complexes. Enzymatically debranched and resistant starch has a small molecular size which confers chain aggregation into a helical hydrogel network that traps the drug molecules, protecting them from biodegradation. The modified starch has been used to modulate the intestinal/colon-specific or controlled systemic delivery of oral small molecule drugs and macromolecular therapeutics. This review highlights synthesis aspects of starch and starch derivatives, and their outcomes and challenges of applications in oral drug delivery.
  4. Yusuf CYL, Abdullah JO, Shaharuddin NA, Abu Seman I, Abdullah MP
    Plant Cell Rep, 2018 Feb;37(2):265-278.
    PMID: 29090330 DOI: 10.1007/s00299-017-2228-7
    KEY MESSAGE: The oil palm EgPAL1 gene promoter and its regulatory region were functional as a promoter in the heterologous system of Arabidopsis according to the cis-acting elements present in that region. The promoter was developmentally regulated, vascular tissue specific and responsive to water stress agents. Phenylalanine ammonia lyase (PAL, EC 4.3.1.24) is the key enzyme of the phenylpropanoid pathway which plays important roles in plant development and adaptation. To date, there is no report on the study of PAL from oil palm (Elaeis guineensis), an economically important oil crop. In this study, the 5' regulatory sequence of a highly divergent oil palm PAL gene (EgPAL1) was isolated and fused with GUS in Arabidopsis to create two transgenic plants carrying the minimal promoter with (2302 bp) and without its regulatory elements (139 bp). The regulatory sequence contained cis-acting elements known to be important for plant development and stress response including the AC-II element for lignin biosynthesis and several stress responsive elements. The promoter and its regulatory region were fully functional in Arabidopsis. Its activities were characterised by two common fundamental features of PAL which are responsive to plant internal developmental programme and external factors. The promoter was developmentally regulated in certain organs; highly active in young organs but less active or inactive in mature organs. The presence of the AC elements and global activity of the EgPAL1 promoter in all organs resembled the property of lignin-related genes. The existence of the MBS element and enhancement of the promoter activity by PEG reflected the behaviour of drought-responsive genes. Our findings provide a platform for evaluating oil palm gene promoters in the heterologous system of Arabidopsis and give insights into the activities of EgPAL1 promoter in oil palm.
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