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Fulltext The worldwide trend of Campylobacter spp., infection from duck-related isolates and associated phenotypic and genotypic antibiotic resistance, since 1985: identifying opportunities and challenges for prevention and control

Jafari S, Ebrahimi M, Luangtongkum T

Poult Sci, 2021 Apr 23;100(8):101213.
PMID: 34237548 DOI: 10.1016/j.psj.2021.101213

Campylobacter, a leading cause of foodborne diseases, is well recognized worldwide. Poultry and poultry products are considered as major sites for Campylobacter infection in humans. The extensive uses of antibiotics mostly as growth promoters and for therapeutic purposes have led to the emergence of antibiotic-resistant strains of foodborne pathogens including Campylobacter. A key tenet of this paper is the need for reviewing the previous studies conducted around the globe on the prevalence and antimicrobial resistance of Campylobacter spp. isolates in duck to better understand the sources and trends of infection. Based on published data, the prevalence of Campylobacter spp. in duck and duck-related samples ranged from 0% to 100% and was largely influenced by the isolation method. Among Campylobacter spp., C. jejuni was the predominant cause of campylobacteriosis, followed by C. coli. Campylobacter spp. from ducks were mostly resistant to fluoroquinolones and tetracycline and a lesser extent to gentamicin, chloramphenicol, and erythromycin. Some studies showed that ducks may pose a risk for acquiring campylobacteriosis because they had genotypes quite similar to human isolates detected previously. A continued monitoring approach is needed, at national and international levels, with enhanced surveillance and reporting of trends, as well as harmonization of surveillance systems toward a one-health approach to monitoring antimicrobial resistance in animal production particularly if increased resistance rates are being demonstrated.
Manipulation of Rumen Microbial Fermentation by Polyphenol Rich Solvent Fractions from Papaya Leaf to Reduce Green-House Gas Methane and Biohydrogenation of C18 PUFA

Jafari S, Meng GY, Rajion MA, Jahromi MF, Ebrahimi M

J Agric Food Chem, 2016 Jun 08;64(22):4522-30.
PMID: 27192629 DOI: 10.1021/acs.jafc.6b00846

Different solvents (hexane, chloroform, ethyl acetate, butanol, and water) were used to identify the effect of papaya leaf (PL) fractions (PLFs) on ruminal biohydrogenation (BH) and ruminal methanogenesis in an in vitro study. PLFs at a concentration of 0 (control, CON) and 15 mg/250 mg dry matter (DM) were mixed with 30 mL of buffered rumen fluid and were incubated for 24 h. Methane (CH4) production (mL/250 mg DM) was the highest (P < 0.05) for CON (7.65) and lowest for the chloroform fraction (5.41) compared to those of other PLFs at 24 h of incubation. Acetate to propionate ratio was the lowest for PLFs compared to that of CON. Supplementation of the diet with PLFs significantly (P < 0.05) decreased the rate of BH of C18:1n-9 (oleic acid; OA), C18:2n-6 (linoleic acid; LA), and C18:3n-3 (α-linolenic acid; LNA) compared to that of CON after 24 h of incubation. Real time PCR indicated that total protozoa and total methanogen population in PLFs decreased (P < 0.05) compared to those of CON.
Papaya (Carica papaya) leaf methanolic extract modulates in vitro rumen methanogenesis and rumen biohydrogenation

Jafari S, Goh YM, Rajion MA, Jahromi MF, Ahmad YH, Ebrahimi M

Anim Sci J, 2017 Feb;88(2):267-276.
PMID: 27345820 DOI: 10.1111/asj.12634

Papaya leaf methanolic extract (PLE) at concentrations of 0 (CON), 5 (LLE), 10 (MLE) and 15 (HLE) mg/250 mg dry matter (DM) with 30 mL buffered rumen fluid were incubated for 24 h to identify its effect on in vitro ruminal methanogenesis and ruminal biohydrogenation (BH). Total gas production was not affected (P > 0.05) by addition of PLE compared to the CON at 24 h of incubation. Methane (CH4 ) production (mL/250 mg DM) decreased (P
Fulltext Synchronization and chimera states in the network of electrochemically coupled memristive Rulkov neuron maps

Mehrabbeik M, Parastesh F, Ramadoss J, Rajagopal K, Namazi H, Jafari S

Math Biosci Eng, 2021 Oct 28;18(6):9394-9409.
PMID: 34814351 DOI: 10.3934/mbe.2021462

Map-based neuronal models have received much attention due to their high speed, efficiency, flexibility, and simplicity. Therefore, they are suitable for investigating different dynamical behaviors in neuronal networks, which is one of the recent hottest topics. Recently, the memristive version of the Rulkov model, known as the m-Rulkov model, has been introduced. This paper investigates the network of the memristive version of the Rulkov neuron map to study the effect of the memristor on collective behaviors. Firstly, two m-Rulkov neuronal models are coupled in different cases, through electrical synapses, chemical synapses, and both electrical and chemical synapses. The results show that two electrically coupled memristive neurons can become synchronous, while the previous studies have shown that two non-memristive Rulkov neurons do not synchronize when they are coupled electrically. In contrast, chemical coupling does not lead to synchronization; instead, two neurons reach the same resting state. However, the presence of both types of couplings results in synchronization. The same investigations are carried out for a network of 100 m-Rulkov models locating in a ring topology. Different firing patterns, such as synchronization, lagged-phase synchronization, amplitude death, non-stationary chimera state, and traveling chimera state, are observed for various electrical and chemical coupling strengths. Furthermore, the synchronization of neurons in the electrical coupling relies on the network's size and disappears with increasing the nodes number.
Fulltext Dynamic analysis of the discrete fractional-order Rulkov neuron map

Vivekanandhan G, Abdolmohammadi HR, Natiq H, Rajagopal K, Jafari S, Namazi H

Math Biosci Eng, 2023 Jan;20(3):4760-4781.
PMID: 36896521 DOI: 10.3934/mbe.2023220

Human evolution is carried out by two genetic systems based on DNA and another based on the transmission of information through the functions of the nervous system. In computational neuroscience, mathematical neural models are used to describe the biological function of the brain. Discrete-time neural models have received particular attention due to their simple analysis and low computational costs. From the concept of neuroscience, discrete fractional order neuron models incorporate the memory in a dynamic model. This paper introduces the fractional order discrete Rulkov neuron map. The presented model is analyzed dynamically and also in terms of synchronization ability. First, the Rulkov neuron map is examined in terms of phase plane, bifurcation diagram, and Lyapunov exponent. The biological behaviors of the Rulkov neuron map, such as silence, bursting, and chaotic firing, also exist in its discrete fractional-order version. The bifurcation diagrams of the proposed model are investigated under the effect of the neuron model's parameters and the fractional order. The stability regions of the system are theoretically and numerically obtained, and it is shown that increasing the order of the fractional order decreases the stable areas. Finally, the synchronization behavior of two fractional-order models is investigated. The results represent that the fractional-order systems cannot reach complete synchronization.
Retraction Note: The best drug supplement for obesitytreatment: a systematic review and network meta-analysis

Salari N, Jafari S, Darvishi N, Valipour E, Mohammadi M, Mansouri K, et al.

Diabetol Metab Syndr, 2023 Apr 17;15(1):74.
PMID: 37062832 DOI: 10.1186/s13098-023-01048-3
Fulltext The best drug supplement for obesity treatment: a systematic review and network meta-analysis

Salari N, Jafari S, Darvishi N, Valipour E, Mohammadi M, Mansouri K, et al.

Diabetol Metab Syndr, 2021 Oct 18;13(1):110.
PMID: 34663429 DOI: 10.1186/s13098-021-00733-5

BACKGROUND: Obesity is a complex disease with an increasing prevalence worldwide. There are different weight-management options for obesity treatment, including dietary control, exercise, surgery, and medication. Medications are always associated with different responses from different people. More safety and efficacy of drugs with fewer side effects are valuable for any clinical condition. In this systematic review and network meta-analysis, different anti-obesity drugs are compared to identify the most effective drug.
METHODS: All relevant studies were extracted by searching national and international databases of SID, MagIran, ProQuest, PubMed, Science Direct, Scopus, Web of Science (WoS), and Google Scholar without time limit until October 2020. Finally, the meta-analysis was performed with the 11 remaining studies containing 14 different drug supplements. The standardized mean difference (SMD) was calculated at a 95% confidence interval (CI) to evaluate the effects of each treatment group compared with placebo. A random-effect model was used to evaluate the effect of individual studies on the final result. Heterogeneity and incompatibility of the network were assessed by Cochran's Q and Higgins I2, and the Net Heat chart, respectively. Data analysis was performed using R software.
RESULTS: Our results showed that there were significant mean effects in people intervened with Phentermine 15.0 mg + Topiramate 92.0 mg, Phentermine 7.5 mg + Topiramate 46.0 mg, Pramlintide, Naltrexone + Bupropion 32, and Liraglutide, with SMD effects size = - 9.1, - 7.4, - 6.5, - 5.9, - 5.35, respectively.
CONCLUSION: This study was performed to compare the effect of different drugs used for weight loss in obese patients. The most effective drugs for weight loss were phentermine and topiramate, pramlintide, naltrexone, bupropion, and liraglutide compared to placebo treatment, respectively. This study provides new insights into anti-obesity drugs and hopes to shed new light on future research to manage and treat obesity.
Fulltext Effects of dietary n-6: n-3 polyunsaturated fatty acid ratios on meat quality, carcass characteristics, tissue fatty acid profiles, and expression of lipogenic genes in growing goats

Ebrahimi M, Rajion MA, Jafari S, Faseleh Jahromi M, Oskoueian E, Qurni Sazili A, et al.

PLoS One, 2018;13(8):e0188369.
PMID: 30067750 DOI: 10.1371/journal.pone.0188369

The present study was conducted to investigate the effects of altering the ratio of n-6 to n-3 fatty acids in the diet on meat quality, fatty acid composition of muscle, and expression of lipogenic genes in the muscle of Boer goats. A total of twenty-one Boer goats (5 months old; 31.66±1.07 kg body weight) were randomly assigned to three dietary treatments with n-6:n-3 fatty acid ratios of 2.27:1 (LR), 5.01:1 (MR) and 10.38:1 (HR), fed at 3.7% of body weight. After 100 days of feeding, all goats were slaughtered and the longissimus dorsi muscle was sampled for analysis of fatty acids and gene expression. The dietary treatments did not affect (P>0.05) the carcass traits, and meat quality of growing goats. The concentrations of cis-9,trans-11 conjugated linoleic acid, trans vaccenic acid, polyunsaturated fatty acids, and unsaturated/saturated fatty acid ratios linearly increased (P<0.01) with decreasing dietary n-6:n-3 fatty acid ratios, especially for LR in the longissimus dorsi muscle of goats. In contrast, the mRNA expression level of the PPARα and PPARγ was down-regulated and stearoyl-CoA desaturase up-regulated in the longissimus dorsi of growing goats with increasing dietary n-6:n-3 fatty acid ratios (P<0.01). In conclusion, the results obtained indicate that the optimal n-6:n-3 fatty acid ratio of 2.27:1 exerted beneficial effects on meat fatty acid profiles, leading towards an enrichment in n-3 polyunsaturated fatty acids and conjugated linoleic acid in goat intramuscular fat.
Latest developments in silica-based thermoluminescence spectrometry and dosimetry

Bradley DA, Jafari SM, Siti Shafiqah AS, Tamcheck N, Shutt A, Siti Rozaila Z, et al.

Appl Radiat Isot, 2016 Nov;117:128-134.
PMID: 26778762 DOI: 10.1016/j.apradiso.2015.12.034

Using irradiated doped-silica preforms from which fibres for thermoluminescence dosimetry applications can be fabricated we have carried out a range of luminescence studies, the TL yield of the fibre systems offering many advantages over conventional passive dosimetry types. In this paper we investigate such media, showing emission spectra for irradiated preforms and the TL response of glass beads following irradiation to an 241Am-Be neutron source located in a tank of water, the glass fibres and beads offering the advantage of being able to be placed directly into liquid. The outcomes from these and other lines of research are intended to inform development of doped silica radiation dosimeters of versatile utility, extending from environmental evaluations through to clinical and industrial applications.
Improved in vitro development of cloned bovine embryos using S-adenosylhomocysteine, a non-toxic epigenetic modifying reagent

Jafari S, Hosseini MS, Hajian M, Forouzanfar M, Jafarpour F, Abedi P, et al.

Mol. Reprod. Dev., 2011 Aug;78(8):576-84.
PMID: 21721066 DOI: 10.1002/mrd.21344

In this study, fibroblast cells were stably transfected with mouse POU5F1 promoter-driven enhanced green fluorescent protein (EGFP) to investigate the effect of S-adenosylhomocysteine (SAH), the reversible non-toxic inhibitor of DNA-methyltransferases (DNMTs), at different intervals post-fusion on in vitro development of cloned bovine embryos. Treatment with SAH for 12 hr resulted in 54.6 ± 7.7% blastocyst production, which was significantly greater than in vitro fertilized embryos (IVF: 37.2 ± 2.7%), cloned embryos treated with SAH for 72 hr (31.0 ± 7.6%), and control cloned embryos (34.6 ± 3.6%). The fluorescence intensities of the EGFP-POU5F1 reporter gene at all intervals of SAH treatment, except of 72 hr, were significantly higher than control somatic cell nuclear transfers (SCNT) embryos. The intensity of DNA-methylation in cloned embryos treated with SAH for 48 hr was similar to that of IVF embryos, and was significantly lower than the other SCNT groups. The levels of H3K9 acetylation in all SCNT groups were significantly lower than IVF embryos. Real-time PCR analysis of gene expression revealed significantly higher expression of POU5F1 in cloned versus IVF blastocysts. Neither embryo production method (SCNT vs. IVF) nor the SAH treatment interval affected expression of the BCL2 gene. Cloned embryos at all intervals of SAH treatment, except for 24 hr, had significantly increased VEGF transcript compared to IVF and control SCNT embryos. It was suggested that the time interval of DNMT inhibition may have important consequences on different in vitro features of bovine SCNT, and the improving effects of DNMT inhibition on developmental competency of cloned embryos are restricted to a specific period of time preceding de novo methylation.
Fulltext Epigenetic modification does not determine the time of POU5F1 transcription activation in cloned bovine embryos

Jafari S, Hosseini SM, Hajian M, Forouzanfar M, Jafarpour F, Abedi P, et al.

J Assist Reprod Genet, 2011 Nov;28(11):1119-27.
PMID: 22020531 DOI: 10.1007/s10815-011-9638-1

To investigate the effect of epigenetic modification on pattern, time and capacity of transcription activation of POU5F1, the key marker of pluripotency, in cloned bovine embryos.
Erratum to: Brief histories of medical physics in Asia-Oceania

Round WH, Jafari S, Kron T, Azhari HA, Chhom S, Hu Y, et al.

Australas Phys Eng Sci Med, 2015 Sep;38(3):525.
PMID: 26349560 DOI: 10.1007/s13246-015-0370-5
Brief histories of medical physics in Asia-Oceania

Round WH, Jafari S, Kron T, Azhari HA, Chhom S, Hu Y, et al.

Australas Phys Eng Sci Med, 2015 Sep;38(3):381-98.
PMID: 25894289 DOI: 10.1007/s13246-015-0342-9

The history of medical physics in Asia-Oceania goes back to the late nineteenth century when X-ray imaging was introduced, although medical physicists were not appointed until much later. Medical physics developed very quickly in some countries, but in others the socio-economic situation as such prevented it being established for many years. In others, the political situation and war has impeded its development. In many countries their medical physics history has not been well recorded and there is a danger that it will be lost to future generations. In this paper, brief histories of the development of medical physics in most countries in Asia-Oceania are presented by a large number of authors to serve as a record. The histories are necessarily brief; otherwise the paper would quickly turn into a book of hundreds of pages. The emphasis in each history as recorded here varies as the focus and culture of the countries as well as the length of their histories varies considerably.
Fulltext Molecular interaction of fibrinogen with zeolite nanoparticles

Derakhshankhah H, Hosseini A, Taghavi F, Jafari S, Lotfabadi A, Ejtehadi MR, et al.

Sci Rep, 2019 02 07;9(1):1558.
PMID: 30733474 DOI: 10.1038/s41598-018-37621-4

Fibrinogen is one of the key proteins that participate in the protein corona composition of many types of nanoparticles (NPs), and its conformational changes are crucial for activation of immune systems. Recently, we demonstrated that the fibrinogen highly contributed in the protein corona composition at the surface of zeolite nanoparticles. Therefore, understanding the interaction of fibrinogen with zeolite nanoparticles in more details could shed light of their safe applications in medicine. Thus, we probed the molecular interactions between fibrinogen and zeolite nanoparticles using both experimental and simulation approaches. The results indicated that fibrinogen has a strong and thermodynamically favorable interaction with zeolite nanoparticles in a non-cooperative manner. Additionally, fibrinogen experienced a substantial conformational change in the presence of zeolite nanoparticles through a concentration-dependent manner. Simulation results showed that both E- and D-domain of fibrinogen are bound to the EMT zeolite NPs via strong electrostatic interactions, and undergo structural changes leading to exposing normally buried sequences. D-domain has more contribution in this interaction and the C-terminus of γ chain (γ377-394), located in D-domain, showed the highest level of exposure compared to other sequences/residues.
Platform presentations

Pereda J, Niimi G, Kaul JM, Mishra S, Pangtey B, Peri D, et al.

Surg Radiol Anat, 2009 Sep;31 Suppl 1:49-93.
PMID: 27392491 DOI: 10.1007/BF03371485

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