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  1. Shafie NA, Lau NS, Ramachandran H, Amirul AA
    Genome Announc, 2017 Jan 19;5(3).
    PMID: 28104662 DOI: 10.1128/genomeA.01498-16
    Cupriavidus sp. USMAA1020, USMAA2-4, and USMAHM13 are capable of producing polyhydroxyalkanoate (PHA). This biopolymer is an alternative solution to synthetic plastics, whereby polyhydroxyalkanoate synthase is the key enzyme involved in PHA biosynthesis. Here, we report the complete genomes of three Cupriavidus sp. strains: USMAA1020, USMAA2-4, and USMAHM13.
  2. Shafie NA, Aris AZ, Zakaria MP, Haris H, Lim WY, Isa NM
    PMID: 23043340 DOI: 10.1080/10934529.2012.717810
    An investigative study was carried out in Langat River to determine the heavy metal pollution in the sediment with 22 sampling stations selected for the collection of sediment samples. The sediment samples were digested and analyzed for extractable metal ((48)Cd, (29)Cu, (30)Zn, (33)As, (82)Pb) using the Inductively Coupled Plasma-Mass Spectrometry (ICP-MS). Parameters, such as pH, Eh, electrical conductivity (EC), salinity, cation exchange capacity (CEC) and loss on ignition (LOI) were also determined. The assessment of heavy metal pollution was derived using the enrichment factors (EF) and geoaccumulation index (I(geo)). This study revealed that the sediment is predominantly by As > Cd > Pb > Zn > Cu. As recorded the highest EF value at 187.45 followed by Cd (100.59), Pb (20.32), Zn (12.42) and Cu (3.46). This is similar to the I(geo), which indicates that the highest level goes to As (2.2), exhibits moderately polluted. Meanwhile, Cd recorded 1.8 and Pb (0.23), which illustrates that both of these elements vary from unpolluted to moderately polluted. The Cu and Zn levels are below 0, which demonstrates background concentrations. The findings are expected to update the current status of the heavy metal pollution as well as creating awareness concerning the security of the river water as a drinking water source.
  3. Atiqah NS, Pesiu E, Sarimi MS, Shafie NA, Koid CW, Norhazrina N, et al.
    PhytoKeys, 2023;234:35-49.
    PMID: 37841962 DOI: 10.3897/phytokeys.234.105783
    A checklist of the bryophyte flora of Mount Tebu Forest Reserve in Terengganu, Peninsular Malaysia, is presented. A total of 189 taxa in 71 genera and 26 families were enumerated. This figure represents 63% of the 298 bryophyte species recorded so far for the State of Terengganu. Out of 189 taxa of bryophytes, 26 liverworts are new additions to the bryoflora of Terengganu. The most prominent liverwort family is represented by Lejeuneaceae, with 54 species from 17 genera, while the moss family is the Sematophyllaceae, with 34 taxa in 13 genera. The majority of the species are epiphytes, either corticolous or ramicolous. Almost half of the bryophyte species have wider elevational ranges and occur from the lowlands to the summit of Mount Tebu.
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