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Phenotypic variability and therapeutic implications of Candida species in patients with oral lichen planus

Arora S, Verma M, Gupta SR, Urs AB, Dhakad MS, Kaur R

Biotech Histochem, 2016 May;91(4):237-41.
PMID: 26984382 DOI: 10.3109/10520295.2015.1127425

We investigated the prevalence and phenotypic variation of Candida species in oral lichen planus (OLP) and the therapeutic implications of our findings. Eighty patients with clinically and histopathologically confirmed cases of OLP (64 non-erosive, 16 erosive) and a control group of 80 healthy individuals with no predisposing factors for oral candidiasis were examined for evidence of Candida infection. Oral swabs and smears were obtained for cytology and culture. Identification, speciation and antifungal susceptibility tests of Candida isolates were performed using an automated microbial identification system. Fifty percent of erosive OLP cases, 28% of non-erosive cases and none of the controls showed evidence of Candida. Candida albicans was found predominantly in non-erosive OLP, while other Candida species were predominate in erosive OLP. Non-Candida albicans isolates (C. glabrata, C. krusei) were resistant to the commonly used antifungals, clotrimazole and fluconazole. Candida infection is common in cases of OLP. We recommend antifungal sensitivity testing prior to antifungal therapy for the erosive form of OLP.
A new attempt to control volatile organic compounds (VOCs) pollution - Modification technology of biomass for adsorption of VOCs gas

Zheng G, Wei K, Kang X, Fan W, Ma NL, Verma M, et al.

Environ Pollut, 2023 Nov 01;336:122451.
PMID: 37648056 DOI: 10.1016/j.envpol.2023.122451

The detrimental impact of volatile organic compounds on the surroundings is widely acknowledged, and effective solutions must be sought to mitigate their pollution. Adsorption treatment is a cost-effective, energy-saving, and flexible solution that has gained popularity. Biomass is an inexpensive, naturally porous material with exceptional adsorbent properties. This article examines current research on volatile organic compounds adsorption using biomass, including the composition of these compounds and the physical (van der Waals) and chemical mechanisms (Chemical bonding) by which porous materials adsorb them. Specifically, the strategic modification of the surface chemical functional groups and pore structure is explored to facilitate optimal adsorption, including pyrolysis, activation, heteroatom doping and other methods. It is worth noting that biomass adsorbents are emerging as a highly promising strategy for green treatment of volatile organic compounds pollution in the future. Overall, the findings signify that biomass modification represents a viable and competent approach for eliminating volatile organic compounds from the environment.
Utilizing adsorption of wood and its derivatives as an emerging strategy for the treatment of heavy metal-contaminated wastewater

Jiang J, Shi Y, Ma NL, Ye H, Verma M, Ng HS, et al.

Environ Pollut, 2024 Jan 01;340(Pt 1):122830.
PMID: 37918773 DOI: 10.1016/j.envpol.2023.122830

The rapid development of the industrial sector has resulted in tremendous economic growth. However, this growth has also presented environmental challenges, specifically due to the substantial sewage generated and its contribution to the early warning of global water resource depletion. Large concentrations of poisonous heavy metals, including cadmium (Cd), chromium (Cr), copper (Cu), lead (Pb), and nickel (Ni), are found in industrial effluent. Therefore, various studies are currently underway to provide effective solutions to alleviate heavy metal ion pollution in sewage. One emerging strategy for sewage pollution remediation is adsorption using wood and its derivatives. This approach is gaining popularity due to the porous structure, excellent mechanical properties, and easy chemical modification of wood. Recent studies have focused on removing heavy metal ions from sewage, summarising and analysing different technical principles, affecting factors, and mainstream chemical modification methods on wood. Furthermore, this work provides insight into potential future development direction for enhanced adsorption of heavy metal ions using wood and its derivatives in wastewater treatment. Overall, this review aims to raise awareness of environmental pollution caused by heavy metals in sewage and promote green environmental protection, low-carbon energy-saving, and sustainable solutions for sewage heavy metal treatment.
Fulltext Exploring the efficacy of 1-amino-cyclopropane-1-carboxylic acid (ACCA) as a natural compound in strengthening maize resistance against biotic and abiotic stressors: an empirical computational study

Debnath S, Elgorban AM, Bahkali AH, Eswaramoorthy R, Verma M, Tiwari P, et al.

Front Microbiol, 2023;14:1232086.
PMID: 37637126 DOI: 10.3389/fmicb.2023.1232086

OBJECTIVE: This study aims to understand plant-bacteria interactions that enhance plant resistance to environmental stressors, with a focus on maize (Zea mays L.) and its vulnerability to various pathogenic organisms. We examine the potential of 1-amino-cyclopropane-1-carboxylic acid (ACCA) as a compound to boost maize's resilience against stressors and pathogens.
BACKGROUND: With the growing global population and increased food demand, the study of endophytes, comprising bacteria and fungi, becomes crucial. They reside within plant tissues, affecting their hosts either beneficially or detrimentally. Agrobacteria are of specific interest due to their potential to contribute to developing strategies for plant resistance enhancement.
METHODS: We conducted exhaustive research on the defense-related proteins and mechanisms involved in maize-pathogen interactions. The efficacy of ACCA as a natural-compound that could enhance maize's resistance was examined.
RESULTS: Our research indicates that ACCA, having a binding energy of -9.98 kcal/mol, successfully strengthens maize resistance against pathogenic assaults and drought stress. It plays a crucial protective role in maize plants as they mature, outperforming other ligands in its effectiveness to improve productivity and increase yield.
CONCLUSION: Applying ACCA to maize plants has considerable potential in enhancing their resilience and tolerance to stress, proving to be an effective strategy to boost crop yield and productivity. This could help address the increasing global food demand. However, more research is needed to optimize ACCA application methods and to gain a comprehensive understanding of its long-term effects on maize cultivations and the environment.
Fulltext Enhancing drought tolerance in cauliflower (Brassica oleracea var. botrytis) by targeting LFY transcription factor modulation via the ethylene precursor, ACCA: an innovative computational approach

Debnath S, Elgorban AM, Bahkali AH, Eswaramoorthy R, Verma M, Syed A, et al.

Front Plant Sci, 2024;15:1255979.
PMID: 38481405 DOI: 10.3389/fpls.2024.1255979

BACKGROUND: Brassica oleracea var. botrytis is an annual or biennial herbaceous vegetable plant in the Brassicaceae family notable for its edible blossom head. A lot of effort has gone into finding defense-associated proteins in order to better understand how cauliflower and pathogens interact. Endophytes are organisms that live within the host plant and reproduce. Endophytes are bacteria and fungi that reside in plant tissues and can either help or harm the plant. Several species have aided molecular biologists and plant biotechnologists in various ways. Water is essential for a healthy cauliflower bloom. When the weather is hot, this plant dries up, and nitrogen scarcity can be detrimental to cauliflower growth.
OBJECTIVE: The study sought to discern plant growth promoting (PGP) compounds that can amplify drought resilience and boost productivity in cauliflower.
METHODS: Investigations were centered on endophytes, microorganisms existing within plant tissues. The dual role of beneficial and detrimental Agrobacterium was scrutinized, particularly emphasizing the ethylene precursor compound, 1-amino-cyclopropane-1-carboxylic acid (ACCA).
RESULTS: ACCA possessed salient PGP traits, particularly demonstrating a pronounced enhancement of drought resistance in cauliflower plants. Specifically, during the pivotal marketable curd maturity phase, which necessitates defense against various threats, ACCA showcased a binding energy of -8.74 kcal/mol.
CONCLUSION: ACCA holds a significant promise in agricultural productivity, with its potential to boost drought resistance and cauliflower yield. This could be particularly impactful for regions grappling with high temperatures and possible nitrogen shortages. Future research should explore ACCA's performance under diverse environmental settings and its applicability in other crops.
Remediation and recovery of Kariba weed as emerging contaminant in freshwater and shellfish aquaculture system via solvothermal liquefaction

Azwar E, Mahari WAW, Liew RK, Ramlee MZ, Verma M, Chong WWF, et al.

Sci Total Environ, 2023 Mar 08;876:162673.
PMID: 36894104 DOI: 10.1016/j.scitotenv.2023.162673

Fast growing Kariba weed causes major problems and pollution on freshwater and shellfish aquaculture systems by interfering with nutrient uptake of crops, restricting sunlight penetration, and decreasing water quality due to massive biomass of Kariba weed remnants. Solvothermal liquefaction is considered an emerging thermochemical technique to convert waste into high yield of value-added products. Solvothermal liquefaction (STL) of Kariba weed as an emerging contaminant was performed to investigate the effects of different types of solvents (ethanol and methanol) and Kariba weed mass loadings (2.5-10 % w/v) on treating and reducing the weed via conversion into potentially useful crude oil product and char. Up to 92.53 % of Kariba weed has been reduced via this technique. The optimal conditions for crude oil production were found to be at 5 % w/v of mass loading in methanol medium, resulting in a high heating value (HHV) of 34.66 MJ/kg and yield of 20.86 wt%, whereas the biochar production was found to be optimum at 7.5 % w/v of mass loading in methanol medium, resulting in 29.92 MJ/kg of HHV and 25.38 wt% of yield. The crude oil consisted of beneficial chemical compounds for biofuel production such as hexadecanoic acid, methyl ester (65.02 peak area %) and the biochar showed high carbon content (72.83 %). In conclusion, STL as a remediation for emerging Kariba weed is a feasible process for shellfish aquaculture waste treatment and biofuels production.
Metal pollution in freshwater fish: A key indicator of contamination and carcinogenic risk to public health

Panda BP, Mohanta YK, Parida SP, Pradhan A, Mohanta TK, Patowary K, et al.

Environ Pollut, 2023 Aug 01;330:121796.
PMID: 37169242 DOI: 10.1016/j.envpol.2023.121796

Metals are micropollutants that cannot be degraded by microorganisms and are infiltrated into various environmental media, including both freshwater and marine water. Metals from polluted water are absorbed by many aquatic species, especially fish. Fish is a staple food in the diets of many regions in the world; hence, both the type and concentration of metals accumulated and transferred from contaminated water sources to fish must be determined and assessed. In this study, the heavy metal concentration was determined and assessed in fish collected from freshwater sources via published literature and Estimated Daily Intake (EDI), Target hazard quotient (THQ), and Carcinogenic Risk (CR) analyses, aiming to examine the metal pollution in freshwater fish. The fish was used as a bioindicator, and Geographic information system (GIS) was sued to map the polluted regions. The results confirmed that Pb was detected in fish sampled at 28 locations, Cr at 24 locations, Cu and Zn at 30 locations, with values Pb detected ranging from 0.0016 mg kg-1 to 44.3 mg kg-1, Cr detected ranging from 0.07 mg kg-1 to 27 mg kg-1, Cu detected ranging from 0.031 mg kg-1 to 35.54 mg kg-1, and Zn detected ranging from 0.242 mg kg-1 to 103.2 mg kg-1. The strongest positive associations were discovered between Cu-Zn (r = 0.74, p
Recent advances in the control of volatile organic compounds emissions from indoor wood-based panels: A comprehensive review

Yang Y, Zhang Z, Zhang L, Song F, Ren Y, Zhang X, et al.

Sci Total Environ, 2023 Aug 01;884:163741.
PMID: 37120025 DOI: 10.1016/j.scitotenv.2023.163741

Wood-based panels provide efficient alternatives to materials such as plastics derived from traditional petroleum sources and thereby help to mitigate greenhouse gas emissions. Unfortunately, using indoor manufactured panel products also results in significant emissions of volatile organic compounds including olefins, aromatic and ester compounds, which negatively affect human health. This paper highlights recent developments and notable achievements in the field of indoor hazardous air treatment technologies to guide future research toward environmentally friendly and economically feasible directions that may have a significant impact on the improvement of human settlements. Summarizing and synthesizing the principles, advantages, and limitations of different technologies can assist policymakers and engineers in identifying the most appropriate technology for a particular air pollution control program based on criteria such as cost-effectiveness, efficiency, and environmental impact. In addition, insights into the development of indoor air pollution control technologies are provided and potential areas for innovation, improvement of existing technologies, and development of new technologies are identified. Finally, the authors also hope that this sub-paper will raise public awareness of indoor air pollution issues and promote a better understanding of the importance of indoor air pollution control technologies for public health, environmental protection, and sustainable development.
Biotransformation of Raw Mango Seed Waste into Bacterial Hydrolytic Enzymes Enhancement Via Solid State Fermentation Strategy

Khan PA, Mohammad A, Bansal SL, Lal B, Singh P, Singh R, et al.

Mol Biotechnol, 2024 Jan 09.
PMID: 38195817 DOI: 10.1007/s12033-023-01022-4

Solid waste generation is a huge contributor to environmental pollution issues, and food wastes are prominent in this category due to their large generation on a day-to-day basis. Thus, the settlement of daily food waste is one of the major constraints and needs innovative manufacturing sheme to valorize solid waste in sustainable manner. Moreover, these food wastes are rich in organic content, which has promising scope for their value-added products. In the present study, raw mango seed waste has been biotransformed to produce bacterial hydrolytic enzymes as feedstock. On investigating the impact of substrate, the highest bacterial cellulase production was recorded to be 18 IU/gds FP (filter paper) in 24 h of microbial incubation at 5 g of substrate in solid-state fermentation (SSF). Furthermore, at 40 °C and pH 6.0, 23 IU/gds FP enzyme could be produced in 24 h of SSF. Beside this, on comparing the influence of inorganic and organic nitrogen sources, urea has been found to provide better cellulase production, which yielded 28 IU/gds FP in 24 h of incubation, along with 77 IU/gds BG (β-glucosidase) and 89 IU/gds EG (endoglucanase). On the other hand, Tween-40 and Tween-80, two different surfactants, were employed at a 1.0% concentration for 24 h of incubation. It was noticed that Tween-80 showed complete enzyme activity at 24 h, which was found to be relatively superior to that of Tween-40. This study may have potential utility in enzyme production using mango seed as a food waste for various industrial applications.
Platform presentations

Pereda J, Niimi G, Kaul JM, Mishra S, Pangtey B, Peri D, et al.

Surg Radiol Anat, 2009 Sep;31 Suppl 1:49-93.
PMID: 27392491 DOI: 10.1007/BF03371485
Fulltext Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1

Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, Abdellatif M, Abdoli A, Abel S, et al.

Autophagy, 2021 Jan;17(1):1-382.
PMID: 33634751 DOI: 10.1080/15548627.2020.1797280

In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field.

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