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  1. Chen CW, Rothfels CJ, Mustapeng AMA, Gubilil M, Karger DN, Kessler M, et al.
    J Plant Res, 2018 Jan;131(1):67-76.
    PMID: 28741041 DOI: 10.1007/s10265-017-0966-9
    The phylogenetic affinities of the fern genus Aenigmopteris have been the subject of considerable disagreement, but until now, no molecular data were available from the genus. Based on the analysis of three chloroplast DNA regions (rbcL, rps16-matK, and trnL-F) we demonstrate that Aenigmopteris dubia (the type species of the genus) and A. elegans are closely related and deeply imbedded in Tectaria. The other three species of genus are morphologically very similar; we therefore transfer all five known species into Tectaria. Detailed morphological comparison further shows that previously proposed diagnostic characters of Aenigmopteris fall within the range of variation of a broadly circumscribed Tectaria.
  2. Tung CH, Chen CW, Guo RC, Ng HF, Chu YW
    Biomed Res Int, 2016;2016:9480276.
    PMID: 27610389 DOI: 10.1155/2016/9480276
    Background. Quaternary structures of proteins are closely relevant to gene regulation, signal transduction, and many other biological functions of proteins. In the current study, a new method based on protein-conserved motif composition in block format for feature extraction is proposed, which is termed block composition. Results. The protein quaternary assembly states prediction system which combines blocks with functional domain composition, called QuaBingo, is constructed by three layers of classifiers that can categorize quaternary structural attributes of monomer, homooligomer, and heterooligomer. The building of the first layer classifier uses support vector machines (SVM) based on blocks and functional domains of proteins, and the second layer SVM was utilized to process the outputs of the first layer. Finally, the result is determined by the Random Forest of the third layer. We compared the effectiveness of the combination of block composition, functional domain composition, and pseudoamino acid composition of the model. In the 11 kinds of functional protein families, QuaBingo is 23% of Matthews Correlation Coefficient (MCC) higher than the existing prediction system. The results also revealed the biological characterization of the top five block compositions. Conclusions. QuaBingo provides better predictive ability for predicting the quaternary structural attributes of proteins.
  3. Hung CM, Chen CW, Huang CP, Shiung Lam S, Dong CD
    Bioresour Technol, 2022 Jan;343:126082.
    PMID: 34610427 DOI: 10.1016/j.biortech.2021.126082
    Antibiotic sulfamethoxazole (SMX) has been commonly found in various water matrices, therefore effective decontamination method is urgently needed. Metal-free pristine coconut-shell-derived biochar (CSBC), synthesized by thermochemical conversion at 700 °C, was used for activating peroxymonosulfate (PMS), an oxidant, to degrade SMX, a sulfonamide antibiotic, in water. SMX degradation, maximized at 0.05 mM concentration, was 85% in 30 min at pH 5.0 in the presence of 150 mg L-1 of CSBC. Remarkably, SMX removal reached 99% in a chloride-rich CSBC/PMS system. SMX degradation was mainly attributed to the role of CSBC in enhancing PMS activation to produce combined radical (SO4•-/HO•) and nonradical (1O2) reaction pathways. The most abundant genus in the CSBC/PMS system was Methylotenera, which belonged to the Proteobacteria phylum. Thus, from a perspective of biowaste-to-resource recycling and circular bioeconomy view point, CSBC is a potential catalytic activator of PMS for the removal of sulfonamide antibiotics from aqueous environments.
  4. Nguyen TB, Nguyen TK, Chen CW, Chen WH, Bui XT, Lam SS, et al.
    Bioresour Technol, 2023 Aug;382:129182.
    PMID: 37210031 DOI: 10.1016/j.biortech.2023.129182
    In this study, biochar produced from sunflower seeds husk was activated through ZnCl2 to support the NiCo2O4 nanoparticles (NiCo2O4@ZSF) in catalytic activation of peroxymonosulfate (PMS) toward tetracycline (TC) removal from aqueous solution. The good dispersion of NiCo2O4 NPs on the ZSF surface provided sufficient active sites and abundant functional groups for the adsorption and catalytic reaction. The NiCo2O4@ZSF activating PMS showed high removal efficiency up to 99% after 30 min under optimal condition ([NiCo2O4@ZSF] = 25 mg L-1, [PMS] = 0.04 mM, [TC] = 0.02 mM and pH = 7). The catalyst also exhibited good adsorption performance with a maximum adsorption capacity of 322.58 mg g-1. Sulfate radicals (SO4•-), superoxide radical (O2•-), and singlet oxygen (1O2) played a decisive role in the NiCo2O4@ZSF/PMS system. In conclusion, our research elucidated the production of highly efficient carbon-based catalysts for environmental remediation, and also emphasized the potential application of NiCo2O4 doped biochar.
  5. Dong CD, Huang CP, Chen CW, Lam SS, Sonne C, Kang CK, et al.
    Environ Pollut, 2024 Feb 15;343:123173.
    PMID: 38110049 DOI: 10.1016/j.envpol.2023.123173
    Polycyclic aromatic hydrocarbons (PAHs) are critical environmental concerns due to their intrinsic toxic aromatic nature and concomitant circumstances that potentially harm the ecological and human health. In this study, converting mahogany (Swietenia macrophylla King) pericarps to value-added biochar by pyrolysis for evaluating the potential formation/destruction of biochar-bound PAHs was studied for the first time. This study designed and optimized the thermal processing conditions at 300-900 °C in the CO2 or N2 atmosphere, and heteroatoms (N, O, B, NB, and NS) were modified for mahogany pericarps biochar (MPBC) production. The MPBC500 exhibited significantly higher pyrolysis products of PAHs (2780 ± 38 ng g-1) than that of MPBC900 (78 ± 6 ng g-1) under N2 without introducing modified elements. Specifically, the inhibition capacity of MPBC500 for PAHs under CO2 was improved most efficiently by the active nitrogen species of the pyridinic N and pyrrolic N groups. The pyrolysis conditions and heteroatom modification of MPBC altered its physicochemical properties, that is, aromaticity and hydrophobicity, affecting the PAH concentration and composition in the pyrolysis products. This study reveals sustainable approaches to reduce the environmental footprint of biochar by focusing on increases in PAHs pollution in sustainable biochar produced from a low-carbon bioeconomy perspective.
  6. Nguyen TK, Nguyen TB, Chen CW, Chen WH, Bui XT, Lam SS, et al.
    Environ Res, 2024 May 13;252(Pt 4):119143.
    PMID: 38751000 DOI: 10.1016/j.envres.2024.119143
    In this study, biochar derived from chestnut shells was synthesized through pyrolysis at varying temperatures from 300 °C to 900 °C. The study unveiled that the pyrolysis temperature is pivotal in defining the physical and chemical attributes of biochar, notably its adsorption capabilities and its role in activating peracetic acid (PAA) for the efficient removal of acetaminophen (APAP) from aquatic environments. Notably, the biochar processed at 900 °C, referred to as CN900, demonstrated an exceptional adsorption efficiency of 55.8 mg g-1, significantly outperforming its counterparts produced at lower temperatures (CN300, CN500, and CN700). This enhanced performance of CN900 is attributed to its increased surface area, improved micro-porosity, and a greater abundance of oxygen-containing functional groups, which are a consequence of the elevated pyrolysis temperature. These oxygen-rich functional groups, such as carbonyls, play a crucial role in facilitating the decomposition of the O-O bond in PAA, leading to the generation of reactive oxygen species (ROS) through electron transfer mechanisms. This investigation contributes to the development of sustainable and cost-effective materials for water purification, underscoring the potential of chestnut shell-derived biochar as an efficient adsorbent and catalyst for PAA activation, thereby offering a viable solution for environmental cleanup efforts.
  7. Wang Z, Lin CC, Murata K, Kamal ASA, Lin BW, Chen MH, et al.
    Adv Mater, 2023 Oct;35(42):e2303203.
    PMID: 37587849 DOI: 10.1002/adma.202303203
    Although chiral semiconductors have shown promising progress in direct circularly polarized light (CPL) detection and emission, they still face potential challenges. A chirality-switching mechanism or approach integrating two enantiomers is needed to discriminate the handedness of a given CPL; additionally, a large material volume is required for sufficient chiroptical interaction. These two requirements pose significant obstacles to the simplification and miniaturization of the devices. Here, room-temperature chiral polaritons fulfilling dual-handedness functions and exhibiting a more-than-two-order enhancement of the chiroptical signal are demonstrated, by embedding a 40 nm-thick perovskite film with a 2D chiroptical effect into a Fabry-Pérot cavity. By mixing chiral perovskites with different crystal structures, a pronounced 2D chiroptical effect is accomplished in the perovskite film, featured by an inverted chiroptical response for counter-propagating CPL. This inversion behavior matches the photonic handedness switch during CPL circulation in the Fabry-Pérot cavity, thus harvesting giant enhancement of the chiroptical response. Furthermore, affected by the unique quarter-wave-plate effects, the polariton emission achieves a chiral dissymmetry of ±4% (for the emission from the front and the back sides). The room-temperature polaritons with the strong dissymmetric chiroptical interaction shall have implications on a fundamental level and future on-chip applications for biomolecule analysis and quantum computing.
  8. Cámara-Leret R, Frodin DG, Adema F, Anderson C, Appelhans MS, Argent G, et al.
    Nature, 2020 08;584(7822):579-583.
    PMID: 32760001 DOI: 10.1038/s41586-020-2549-5
    New Guinea is the world's largest tropical island and has fascinated naturalists for centuries1,2. Home to some of the best-preserved ecosystems on the planet3 and to intact ecological gradients-from mangroves to tropical alpine grasslands-that are unmatched in the Asia-Pacific region4,5, it is a globally recognized centre of biological and cultural diversity6,7. So far, however, there has been no attempt to critically catalogue the entire vascular plant diversity of New Guinea. Here we present the first, to our knowledge, expert-verified checklist of the vascular plants of mainland New Guinea and surrounding islands. Our publicly available checklist includes 13,634 species (68% endemic), 1,742 genera and 264 families-suggesting that New Guinea is the most floristically diverse island in the world. Expert knowledge is essential for building checklists in the digital era: reliance on online taxonomic resources alone would have inflated species counts by 22%. Species discovery shows no sign of levelling off, and we discuss steps to accelerate botanical research in the 'Last Unknown'8.
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