MyMedR

Four new species of pholcine spiders (Araneae: Pholcidae) from Southeast Asia

Yao Z, Li S, Jäger P

Zootaxa, 2014;3793:331-49.

PMID: 24870173 DOI: 10.11646/zootaxa.3793.3.2

Four new species belonging to four genera of the subfamily Pholcinae are reported from Southeast Asia: Belisana protumida spec. nov. (male, female), Khorata bayeri spec. nov. (male), Pholcus schawalleri spec. nov. (male), and Uthina khaosokensis spec. nov. (male).

Fulltext Twenty-eight new species of the spider genus Merizocera Fage, 1912 (Araneae, Psilodercidae) from South and Southeast Asia

Chang WJ, Yao Z, Li S

Zookeys, 2020;961:41-118.

PMID: 32904093 DOI: 10.3897/zookeys.961.53058

Previously, the genus Merizocera Fage, 1912 comprised only seven species from Indonesia, Malaysia, Sri Lanka, and Thailand. In this study, 28 new species are described from South and Southeast Asia: M. baoshan Li, sp. nov. (♂♀), M. betong Li, sp. nov. (♂♀), M. colombo Li, sp. nov. (♂♀), M. galle Li, sp. nov. (♂♀), M. hponkanrazi Li, sp. nov. (♂), M. kachin Li, sp. nov. (♂♀), M. kandy Li, sp. nov. (♂♀), M. mandai Li, sp. nov. (♂♀), M. krabi Li, sp. nov. (♂♀), M. kurunegala Li, sp. nov. (♂♀), M. lincang Li, sp. nov. (♀), M. mainling Li, sp. nov. (♂♀), M. nyingchi Li, sp. nov. (♀), M. peraderiya Li, sp. nov. (♂♀), M. phuket Li, sp. nov. (♂♀), M. putao Li, sp. nov. (♂♀), M. ranong Li, sp. nov. (♂♀), M. ratnapura Li, sp. nov. (♂♀), M. salawa Li, sp. nov. (♂), M. tak Li, sp. nov. (♀), M. tanintharyi Li, sp. nov. (♂♀), M. tengchong Li, sp. nov. (♂), M. thenna Li, sp. nov. (♂♀), M. uva Li, sp. nov. (♀), M. wenshan Li, sp. nov. (♂♀), M. wui Li, sp. nov. (♂♀), M. yala Li, sp. nov. (♀), and M. yuxi Li, sp. nov. (♂♀). Among them the genus Merizocera is reported for the first time from China, Myanmar, and Singapore.

Fulltext Taxonomic notes on eleven species of the subfamily Cteninae (Araneae, Ctenidae) from Asia

Chu C, Lu Y, Li S, Yao Z

Biodivers Data J, 2022;10:e96003.

PMID: 36761640 DOI: 10.3897/BDJ.10.e96003

BACKGROUND: The spider family Ctenidae Keyserling, 1877 has a worldwide distribution with 584 species belonging to 49 genera. Amongst these, 141 species are from Asia, including 130 species assigned to Cteninae Keyserling, 1877.

NEW INFORMATION: Nine new species belonging to three genera of Cteninae are reported from Asia: Amauropelmakrabi sp. n. (female; Krabi, Thailand), Am.phangnga sp. n. (male; Phang Nga, Thailand), Am.saraburi sp. n. (male and female; Saraburi, Thailand); Anahitamedog sp. n. (male and female; Tibet, China); Bowieninhbinh sp. n. (male; Ninh Binh, Vietnam) and B.vinhphuc sp. n. (male and female; Vinh Phuc, Vietnam) from the robustus-species group; B.borneo sp. n. (male; Sabah, Malaysia) from the chinagirl-species group; B.engkilili sp. n. (female; Engkilili, Malaysia); B.sabah sp. n. (male and female; Sabah, Malaysia) from the scarymonsters-species group. The male of An.popa Jäger & Minn, 2015 and the female of B.fascination Jäger, 2022 (robustus-species group) are described for the first time. B.fascination Jäger, 2022 is reported from China for the first time. In addition, the DNA barcodes of all the species in this study were obtained, except for B.vinhphuc sp. n.

Fulltext A survey of ctenid spiders (Araneae, Ctenidae) from Xishuangbanna Tropical Botanical Garden, Yunnan, China

Chu C, Lu Y, Yao Z, Li S

Biodivers Data J, 2022;10:e87597.

PMID: 36761608 DOI: 10.3897/BDJ.10.e87597

BACKGROUND: Amauropelma Raven, Stumkat & Gray, 2001 currently contains 24 species. It is distributed in Australia, India, Indonesia, Laos and Malaysia. This genus has not been found in China. Ctenus Walckenaer, 1805 comprises 213 known species. This genus is distributed worldwide. Currently, only two species, Ctenuslishuqiang Jäger, 2012 and Ctenusyaeyamensis Yoshida, 1998 are known to occur in China.

NEW INFORMATION: Three new species of ctenid spiders are described from Xishuangbanna Tropical Botanical Garden in Yunnan Province, China: Amauropelmayunnan sp. nov., Ctenusbanna sp. nov. and Ctenusyulin sp. nov. Amauropelma and Ctenusrobustus Thorell, 1897 are reported from China for the first time.

Five new species of the spider genus Savarna Huber, 2005 (Araneae: Pholcidae) from Thailand

Lan T, Yao Z, Zheng G, Wongprom P, Li S

Zootaxa, 2020 May 14;4778(2):zootaxa.4778.2.4.

PMID: 33055822 DOI: 10.11646/zootaxa.4778.2.4

The genus Savarna Huber, 2005 comprises only five species, from southern Thailand, Peninsular Malaysia and Sumatra. In this study, five new species are described from Thailand: Savarna bannang sp. nov. (Yala), S. chiangmai sp. nov. (Chiangmai), S. huahin sp. nov. (Prachuap Kiri Khan), S. satun sp. nov. (Satun), S. thungsong sp. nov. (Nakhon Srithammarat). All new species are described from males and females. The distribution of S. chiangmai sp. nov. represent the northernmost record of the genus.

An immunogenic epitope of Chlamydia pneumoniae from a random phage display peptide library is reactive with both monoclonal antibody and patients sera

Naidu BR, Ngeow YF, Wang LF, Chan L, Yao ZJ, Pang T

Immunol Lett, 1998 Jun;62(2):111-5.

PMID: 9698107

Random 15-mer peptides displayed on filamentous phages were screened in binding studies using a Chlamydia pneumoniae-specific monoclonal antibody (RR-402) and affinity-purified, polyclonal sera from patients seropositive for C. pneumoniae infections by the microimmunofluorescence (MIF) test. One 15-mer epitope, epitope Cpnl5A (LASLCNPKPSDAPVT) was identified in both the monoclonal and polyclonal screenings, and showed higher ELISA reactivity with C. pneumoniae MIF-positive sera compared to patients with other chlamydial infections, non-chlamydial respiratory infections and normal healthy sera (MIF-negative). Interestingly, epitope Cpnl5A also showed significant (52%) amino acid sequence homology to the 56 kDa type-specific antigen of Rickettsia tsutsugamushi, a protein implicated in the virulence of this organism.

Fulltext DJ-1 protects against cell death following acute cardiac ischemia-reperfusion injury

Dongworth RK, Mukherjee UA, Hall AR, Astin R, Ong SB, Yao Z, et al.

Cell Death Dis, 2014 Feb 27;5:e1082.

PMID: 24577080 DOI: 10.1038/cddis.2014.41

Novel therapeutic targets are required to protect the heart against cell death from acute ischemia-reperfusion injury (IRI). Mutations in the DJ-1 (PARK7) gene in dopaminergic neurons induce mitochondrial dysfunction and a genetic form of Parkinson's disease. Genetic ablation of DJ-1 renders the brain more susceptible to cell death following ischemia-reperfusion in a model of stroke. Although DJ-1 is present in the heart, its role there is currently unclear. We sought to investigate whether mitochondrial DJ-1 may protect the heart against cell death from acute IRI by preventing mitochondrial dysfunction. Overexpression of DJ-1 in HL-1 cardiac cells conferred the following beneficial effects: reduced cell death following simulated IRI (30.4±4.7% with DJ-1 versus 52.9±4.7% in control; n=5, P<0.05); delayed mitochondrial permeability transition pore (MPTP) opening (a critical mediator of cell death) (260±33 s with DJ-1 versus 121±12 s in control; n=6, P<0.05); and induction of mitochondrial elongation (81.3±2.5% with DJ-1 versus 62.0±2.8% in control; n=6 cells, P<0.05). These beneficial effects of DJ-1 were absent in cells expressing the non-functional DJ-1(L166P) and DJ-1(Cys106A) mutants. Adult mice devoid of DJ-1 (KO) were found to be more susceptible to cell death from in vivo IRI with larger myocardial infarct sizes (50.9±3.5% DJ-1 KO versus 41.1±2.5% in DJ-1 WT; n≥7, P<0.05) and resistant to cardioprotection by ischemic preconditioning. DJ-1 KO hearts showed increased mitochondrial fragmentation on electron microscopy, although there were no differences in calcium-induced MPTP opening, mitochondrial respiratory function or myocardial ATP levels. We demonstrate that loss of DJ-1 protects the heart from acute IRI cell death by preventing mitochondrial dysfunction. We propose that DJ-1 may represent a novel therapeutic target for cardioprotection.

W2V-repeated index: Prediction of enhancers and their strength based on repeated fragments

Xie W, Yao Z, Yuan Y, Too J, Li F, Wang H, et al.

Genomics, 2024 Jul 29.

PMID: 39084477 DOI: 10.1016/j.ygeno.2024.110906

Enhancers are crucial in gene expression regulation, dictating the specificity and timing of transcriptional activity, which highlights the importance of their identification for unravelling the intricacies of genetic regulation. Therefore, it is critical to identify enhancers and their strengths. Repeated sequences in the genome are repeats of the same or symmetrical fragments. There has been a great deal of evidence that repetitive sequences contain enormous amounts of genetic information. Thus, We introduce the W2V-Repeated Index, designed to identify enhancer sequence fragments and evaluates their strength through the analysis of repeated K-mer sequences in enhancer regions. Utilizing the word2vector algorithm for numerical conversion and Manta Ray Foraging Optimization for feature selection, this method effectively captures the frequency and distribution of K-mer sequences. By concentrating on repeated K-mer sequences, it minimizes computational complexity and facilitates the analysis of larger K values. Experiments indicate that our method performs better than all other advanced methods on almost all indicators.

Fulltext Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, et al.

Autophagy, 2016;12(1):1-222.

PMID: 26799652 DOI: 10.1080/15548627.2015.1100356

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