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Expression of ADR-α1, 2 and ADR-β2 in cumulus cell culture of infertile women with polycystic ovary syndrome and poor responder who are a candidate for IVF: the novel strategic role of clonidine in this expression

Zangeneh FZ, Bagheri M, Shoushtari MS, Naghizadeh MM

J Recept Signal Transduct Res, 2021 Jun;41(3):263-272.
PMID: 32878560 DOI: 10.1080/10799893.2020.1806320

OBJECTIVE: Alpha and beta-adrenoceptors (ADR-α1, 2, and β2) play a regulatory role in the folliculogenesis and steroidogenesis in the ovarian follicles. This study aimed to measure these adrenoceptors mRNA and its protein levels in cumulus cells (CCs) culture of poor ovarian reserve (POR) and polycystic ovarian syndrome (PCOS) infertile women (IVF candidate) and the effect of clonidine treatment at CCs culture.
METHODS: This case/control study was conducted in 2017 includes a control (donation oocytes) and two studies (PCO and POR) groups. The ovulation induction drugs were prescribed in all groups. After the oocyte puncture, the follicular fluid was collected and CCs were isolated were cultured. RNA was extracted and cDNA was synthesized and designed the primer for the ADR-α1, 2 and ADR-β2 gene expression. The protein levels were investigated by Western Blot.
RESULTS: The results showed a high level of three adrenergic expressions in PCO women compared to the control group (p-value
QSPR prediction of the hydroxyl radical rate constant of water contaminants

Borhani TN, Saniedanesh M, Bagheri M, Lim JS

Water Res, 2016 07 01;98:344-53.
PMID: 27124124 DOI: 10.1016/j.watres.2016.04.038

In advanced oxidation processes (AOPs), the aqueous hydroxyl radical (HO) acts as a strong oxidant to react with organic contaminants. The hydroxyl radical rate constant (kHO) is important for evaluating and modelling of the AOPs. In this study, quantitative structure-property relationship (QSPR) method is applied to model the hydroxyl radical rate constant for a diverse dataset of 457 water contaminants from 27 various chemical classes. The constricted binary particle swarm optimization and multiple-linear regression (BPSO-MLR) are used to obtain the best model with eight theoretical descriptors. An optimized feed forward neural network (FFNN) is developed to investigate the complex performance of the selected molecular parameters with kHO. Although the FFNN prediction results are more accurate than those obtained using BPSO-MLR, the application of the latter is much more convenient. Various internal and external validation techniques indicate that the obtained models could predict the logarithmic hydroxyl radical rate constants of a large number of water contaminants with less than 4% absolute relative error. Finally, the above-mentioned proposed models are compared to those reported earlier and the structural factors contributing to the AOP degradation efficiency are discussed.
Mapping pollution dynamics: utilizing GNOME to model oil spill trajectories in tanker terminals

Farzingohar M, Bagheri M, Gholami I, Ibrahim ZZ, Akhir MF

Environ Sci Pollut Res Int, 2024 May;31(25):37404-37427.
PMID: 38777973 DOI: 10.1007/s11356-024-33506-4

The aim of this study is to uncover the multifaceted environmental threats posed by Oil Spill Water Pollution (OSWP) originating from tanker terminals situated in the Qeshm and Hormozgan regions of Iran. In this region, water pollution arises from diverse sources, mostly from ruptured pipelines, corroded valves, unforeseen accidents, and aging facilities. The Qeshm Canal and Qeshm Tanker Terminal emerged as pivotal sites for investigation within this study. The focus is directed towards pinpointing vulnerable areas at risk of water contamination and delving into the intricate pathways and impacts associated with oil spills. Utilizing the sophisticated modeling capabilities of the National Oceanic and Atmospheric Administration's (NOAA) GNOME model, the research explores various scenarios extrapolated from seasonal atmospheric and oceanic data through 2022. The findings show the OSWP hazard zones located northeast of Qeshm. Notably, the wind and currents greatly affect how OSWPs are destined and dispersed. This underscores the intricate interplay between environmental factors and spill dynamics. In essence, this study not only sheds light on the imminent environmental threats posed by OSWP but also underscores the critical need for proactive measures and comprehensive strategies to mitigate the adverse impacts on marine ecosystems and coastal communities.
Sea-level projections using a NARX-NN model of tide gauge data for the coastal city of Kuala Terengganu in Malaysia

Bagheri M, Ibrahim ZZ, Wolf ID, Akhir MF, Talaat WIAW, Oryani B

Environ Sci Pollut Res Int, 2023 Jul;30(34):81839-81857.
PMID: 35789462 DOI: 10.1007/s11356-022-21662-4

The impact of global warming presents an increased risk to the world's shorelines. The Intergovernmental Panel on Climate Change (IPCC) reported that the twenty-first century experienced a severe global mean sea-level rise due to human-induced climate change. Therefore, coastal planners require reasonably accurate estimates of the rate of sea-level rise and the potential impacts, including extreme sea-level changes, floods, and shoreline erosion. Also, land loss as a result of disturbance of shoreline is of interest as it damages properties and infrastructure. Using a nonlinear autoregressive network with an exogenous input (NARX) model, this study attempted to simulate (1991 to 2012) and predict (2013-2020) sea-level change along Merang kechil to Kuala Marang in Terengganu state shoreline areas. The simulation results show a rising trend with a maximum rate of 28.73 mm/year and an average of about 8.81 mm/year. In comparison, the prediction results show a rising sea level with a maximum rate of 79.26 mm/year and an average of about 25.34 mm/year. The database generated from this study can be used to inform shoreline defense strategies adapting to sea-level rise, flood, and erosion. Scientists can forecast sea-level increases beyond 2020 using simulated sea-level data up to 2020 and apply it for future research. The data also helps decision-makers choose measures for vulnerable shoreline settlements to adapt to sea-level rise. Notably, the data will provide essential information for policy development and implementation to facilitate operational decision-making processes for coastal cities.
Fulltext Preparation and characterization of a novel edible film based on Alyssum homolocarpum seed gum

Mohammadi Nafchi A, Olfat A, Bagheri M, Nouri L, Karim AA, Ariffin F

J Food Sci Technol, 2017 May;54(6):1703-1710.
PMID: 28559629 DOI: 10.1007/s13197-017-2602-z

In this study a novel biodegradable edible film based on Alyssum homolocarpum seed gum (AHSG) was fabricated and characterized. Glycerol at three levels (25, 35, and 45% based on dried AHSG) as plasticizer were added. The microstructure and barrier, electromagnetic, mechanical, and thermal properties of the film were characterized. Results showed that permeability to both oxygen and water vapor, increased as the plasticizer content increased from 25 to 45%. The mechanical properties of AHSG films were comparable to those of polysaccharide films. Results showed that the glycerol content significantly decreased the glass-transition temperature of the film. The color measurement indicated that increasing the plasticizer content augmented the b* and L* values. Results of the field emission scanning electron microscopy revealed a uniform and smooth surface morphology and an absence of phase separation among the film compositions. The findings demonstrated that AHSG has the potential to fabricate edible films with enhanced quality characteristics.