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A novel nonlinear time-varying sigmoid transfer function in binary whale optimization algorithm for descriptors selection in drug classification

Mohd Yusof N, Muda AK, Pratama SF, Abraham A

Mol Divers, 2023 Feb;27(1):71-80.
PMID: 35254585 DOI: 10.1007/s11030-022-10410-y

In computational chemistry, the high-dimensional molecular descriptors contribute to the curse of dimensionality issue. Binary whale optimization algorithm (BWOA) is a recently proposed metaheuristic optimization algorithm that has been efficiently applied in feature selection. The main contribution of this paper is a new version of the nonlinear time-varying Sigmoid transfer function to improve the exploitation and exploration activities in the standard whale optimization algorithm (WOA). A new BWOA algorithm, namely BWOA-3, is introduced to solve the descriptors selection problem, which becomes the second contribution. To validate BWOA-3 performance, a high-dimensional drug dataset is employed. The proficiency of the proposed BWOA-3 and the comparative optimization algorithms are measured based on convergence speed, the length of the selected feature subset, and classification performance (accuracy, specificity, sensitivity, and f-measure). In addition, statistical significance tests are also conducted using the Friedman test and Wilcoxon signed-rank test. The comparative optimization algorithms include two BWOA variants, binary bat algorithm (BBA), binary gray wolf algorithm (BGWOA), and binary manta-ray foraging algorithm (BMRFO). As the final contribution, from all experiments, this study has successfully revealed the superiority of BWOA-3 in solving the descriptors selection problem and improving the Amphetamine-type Stimulants (ATS) drug classification performance.

Matched MeSH terms: Whales*
Record of a whale shark off the west coast of Malaya

LE MARE DW

Nature, 1951 Mar 17;167(4246):449.
PMID: 14826801
Matched MeSH terms: Whales*
Baby cry recognition based on WOA-VMD and an improved Dempster-Shafer evidence theory

Zhang K, Ting HN, Choo YM

Comput Methods Programs Biomed, 2024 Mar;245:108043.
PMID: 38306944 DOI: 10.1016/j.cmpb.2024.108043

BACKGROUND AND OBJECTIVE: Conflict may happen when more than one classifier is used to perform prediction or classification. The recognition model error leads to conflicting evidence. These conflicts can cause decision errors in a baby cry recognition and further decrease its recognition accuracy. Thus, the objective of this study is to propose a method that can effectively minimize the conflict among deep learning models and improve the accuracy of baby cry recognition.
METHODS: An improved Dempster-Shafer evidence theory (DST) based on Wasserstein distance and Deng entropy was proposed to reduce the conflicts among the results by combining the credibility degree between evidence and the uncertainty degree of evidence. To validate the effectiveness of the proposed method, examples were analyzed, and applied in a baby cry recognition. The Whale optimization algorithm-Variational mode decomposition (WOA-VMD) was used to optimally decompose the baby cry signals. The deep features of decomposed components were extracted using the VGG16 model. Long Short-Term Memory (LSTM) models were used to classify baby cry signals. An improved DST decision method was used to obtain the decision fusion.
RESULTS: The proposed fusion method achieves an accuracy of 90.15% in classifying three types of baby cry. Improvement between 2.90% and 4.98% was obtained over the existing DST fusion methods. Recognition accuracy was improved by between 5.79% and 11.53% when compared to the latest methods used in baby cry recognition.
CONCLUSION: The proposed method optimally decomposes baby cry signal, effectively reduces the conflict among the results of deep learning models and improves the accuracy of baby cry recognition.

Matched MeSH terms: Whales*
Fulltext Four new species of Ctenodrilus, Raphidrilus, and Raricirrus (Cirratuliformia, Annelida) in Japanese waters, with notes on their phylogenetic position

Jimi N, Fujimoto S, Fujiwara Y, Oguchi K, Miura T

PeerJ, 2022;10:e13044.
PMID: 35282276 DOI: 10.7717/peerj.13044

Four new species of annelids, Ctenodrilus japonicus sp. nov., Raphidrilus misakiensis sp. nov., Raphidrilus okinawaensis sp. nov., and Raricirrus anubis sp. nov., are described based on specimens collected from Japanese waters. Ctenodrilus japonicus sp. nov. inhabits the interstitial environment and can be distinguished from the other congeners by the following features: (i) total of 16 chaetigers, (ii) chaetigers 1-3 with stout hooks, (iii) minute body (approximately 1 mm in length), (iv) all parapodia with the same number of chaetae (two notochaetae; two neurochaetae), and (v) presence of dorsal and ventral papillae. Raphidrilus misakiensis sp. nov. lives under intertidal stones and can be distinguished from other congeners by having pectinate neurochaetae. Raphidrilus okinawaensis sp. nov. inhabits the interstitial environment and can be distinguished from other congeners by: (i) absence of annulation on the peristomium and achaetous segment and (ii) presence of a heart body in chaetigers 4-5. Raricirrus anubis sp. nov. inhabits whale bones and can be distinguished from other congeners by the following features: (i) presence of a heart body in chaetigers 9-14, (ii) presence of capillary neurochaetae on chaetiger 1, and (iii) presence of simple curved spines. A phylogenetic tree based on partial sequences of cytochrome c oxidase subunit I and 16S rRNA from the new species and other cirratulid worms showed that Raphidrilus is included in Cirratuliformia. This is the first record of Raphidrilus and Raricirrus from Japanese waters.

Matched MeSH terms: Whales
Red-list status and extinction risk of the world's whales, dolphins, and porpoises

Braulik GT, Taylor BL, Minton G, Notarbartolo di Sciara G, Collins T, Rojas-Bracho L, et al.

Conserv Biol, 2023 Oct;37(5):e14090.
PMID: 37246556 DOI: 10.1111/cobi.14090

To understand the scope and scale of the loss of biodiversity, tools are required that can be applied in a standardized manner to all species globally, spanning realms from land to the open ocean. We used data from the International Union for the Conservation of Nature Red List to provide a synthesis of the conservation status and extinction risk of cetaceans. One in 4 cetacean species (26% of 92 species) was threatened with extinction (i.e., critically endangered, endangered, or vulnerable) and 11% were near threatened. Ten percent of cetacean species were data deficient, and we predicted that 2-3 of these species may also be threatened. The proportion of threatened cetaceans has increased: 15% in 1991, 19% in 2008, and 26% in 2021. The assessed conservation status of 20% of species has worsened from 2008 to 2021, and only 3 moved into categories of lesser threat. Cetacean species with small geographic ranges were more likely to be listed as threatened than those with large ranges, and those that occur in freshwater (100% of species) and coastal (60% of species) habitats were under the greatest threat. Analysis of odontocete species distributions revealed a global hotspot of threatened small cetaceans in Southeast Asia, in an area encompassing the Coral Triangle and extending through nearshore waters of the Bay of Bengal, northern Australia, and Papua New Guinea and into the coastal waters of China. Improved management of fisheries to limit overfishing and reduce bycatch is urgently needed to avoid extinctions or further declines, especially in coastal areas of Asia, Africa, and South America.

Matched MeSH terms: Whales
Set sustainable goals for the Arctic gateway coordinated international governance is required to resist yet another tipping point

Lam SS, Foong SY, Lee BHK, Low F, Alstrup AKO, Ok YS, et al.

Sci Total Environ, 2021 Jul 01;776:146003.
PMID: 33647650 DOI: 10.1016/j.scitotenv.2021.146003

Global warming is reducing the Arctic sea-ice and causing energetic stress to marine key predatory species such as polar bears and narwhals contributing to the ongoing pollution already threatening the biodiversity and indigenous people of the vulnerable region. Now, the opening of the Arctic gateway and in particular the increase in shipping activities causes further stress to marine mammals in the region. These shipping activities are foreseen to happen in the Northwest and Northeast Passage, Northern Sea Route and Transpolar Sea Route in the Arctic Ocean, which could be yet another step towards a crucial tipping point destabilizing global climate, including weathering systems and sea-level rise. This calls for international governance through the establishment of Arctic International National Parks and more Marine Protected Areas through the Arctic Council and UN's Law of the Sea to ensure sustainable use of the Arctic Ocean and adjacent waters.

Matched MeSH terms: Whales
Fulltext Marine mammals in the waters of East Coast Johor, Malaysia

Jaaman, S.A., Mohamed, C.A.R.

ASM Science Journal, 2014;8(2):143-149.
MyJurnal

Marine mammal searches were opportunistically conducted during the East Coast Johor Scientific Expedition (ECJSE) on 21-30 May 2012, on a live-on-board (LOB) diving vessel, MV BLACK PEARL. The expedition was designed mainly to survey coral reef ecosystems and water quality. Daylight visual observations of the sea were undertaken during sailing and stopping/anchored from the most upper open-deck of the vessel. The survey resulted in two sightings of long-beaked common dolphins (Delphinus capensis), each at Pulau Aur and Pulau Tinggi. Both observations were brief (< 5 minutes) and were made when the vessel was anchored. Based on anecdotal evidences, skeletal remains and previous surveys, the vulnerable dugong, Indo-Pacific bottlenose, Indo-Pacific humpback, Irrawaddy and long-beaked common dolphins, the false killer and pygmy killer whales, and the baleen whales are known to occur in the East Coast Johor waters, at least occasionally. The low sighting rate with marine mammals during this survey is highly likely caused by the survey design and also may be due to the environmental conditions and ecological factors. Dedicated and periodical boat and aerial surveys for marine mammals need to be conducted to determine species diversity and to understand the seasonality, habitat use, and social interactions of the marine mammal populations in the area. The findings will be most useful for marine park and fisheries authorities to plan conservation management strategies for marine mammals and promote their conservation through eco-tourism activities.

Matched MeSH terms: Whales