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Characterization of Streptomyces spp. isolated from the rhizosphere of oil palm and evaluation of their ability to suppress basal stem rot disease in oil palm seedlings when applied as powder formulations in a glasshouse trial

Shariffah-Muzaimah SA, Idris AS, Madihah AZ, Dzolkhifli O, Kamaruzzaman S, Maizatul-Suriza M

World J Microbiol Biotechnol, 2017 Dec 18;34(1):15.
PMID: 29256103 DOI: 10.1007/s11274-017-2396-1

Ganoderma boninense, the main causal agent of oil palm (Elaeis guineensis) basal stem rot (BSR), severely reduces oil palm yields around the world. To reduce reliance on fungicide applications to control BSR, we are investigating the efficacy of alternative control methods, such as the application of biological control agents. In this study, we used four Streptomyces-like actinomycetes (isolates AGA43, AGA48, AGA347 and AGA506) that had been isolated from the oil palm rhizosphere and screened for antagonism towards G. boninense in a previous study. The aim of this study was to characterize these four isolates and then to assess their ability to suppress BSR in oil palm seedlings when applied individually to the soil in a vermiculite powder formulation. Analysis of partial 16S rRNA gene sequences (512 bp) revealed that the isolates exhibited a very high level of sequence similarity (> 98%) with GenBank reference sequences. Isolates AGA347 and AGA506 showed 99% similarity with Streptomyces hygroscopicus subsp. hygroscopicus and Streptomyces ahygroscopicus, respectively. Isolates AGA43 and AGA48 also belonged to the Streptomyces genus. The most effective formulation, AGA347, reduced BSR in seedlings by 73.1%. Formulations using the known antifungal producer Streptomyces noursei, AGA043, AGA048 or AGA506 reduced BSR by 47.4, 30.1, 54.8 and 44.1%, respectively. This glasshouse trial indicates that these Streptomyces spp. show promise as potential biological control agents against Ganoderma in oil palm. Further investigations are needed to determine the mechanism of antagonism and to increase the shelf life of Streptomyces formulations.

Matched MeSH terms: Seedlings/microbiology*
Fulltext Life Cycle Assessment for the Production of Oil Palm Seeds

Muhamad H, Ai TY, Khairuddin NS, Amiruddin MD, May CY

Trop Life Sci Res, 2014 Dec;25(2):41-51.
PMID: 27073598 MyJurnal

The oil palm seed production unit that generates germinated oil palm seeds is the first link in the palm oil supply chain, followed by the nursery to produce seedling, the plantation to produce fresh fruit bunches (FFB), the mill to produce crude palm oil (CPO) and palm kernel, the kernel crushers to produce crude palm kernel oil (CPKO), the refinery to produce refined palm oil (RPO) and finally the palm biodiesel plant to produce palm biodiesel. This assessment aims to investigate the life cycle assessment (LCA) of germinated oil palm seeds and the use of LCA to identify the stage/s in the production of germinated oil palm seeds that could contribute to the environmental load. The method for the life cycle impact assessment (LCIA) is modelled using SimaPro version 7, (System for Integrated environMental Assessment of PROducts), an internationally established tool used by LCA practitioners. This software contains European and US databases on a number of materials in addition to a variety of European- and US-developed impact assessment methodologies. LCA was successfully conducted for five seed production units and it was found that the environmental impact for the production of germinated oil palm was not significant. The characterised results of the LCIA for the production of 1000 germinated oil palm seeds showed that fossil fuel was the major impact category followed by respiratory inorganics and climate change.

Matched MeSH terms: Seedlings
Fulltext The inhibitory effect of grasshopper’s Cyperus (Cyperus iria L.) on the seedling growth of five Malaysian rice varieties

Ismail, B.S., Mohammed Abu Bakar Siddique

Trop Life Sci Res, 2011;22(1):-.
MyJurnal

Experiments were carried out in the laboratory and greenhouse to determine the growth inhibitory effects of Grassohopper’s cyperus (Cyperus iria L.) on the seedlings of 5 Malaysian rice varieties namely MR211, MRQ74, MR220, MR84 and MR232. Three concentrations of the aqueous extract of the weed (12.5, 25.0 and 50.0 g/l) and weed debris (5, 10 and 20 g dry debris/1000 g soil) were used to test the allelopathic effect of
C. iria on the growth of the rice plants. The weed leaf, stem and root extracts reduced the growth of the rice seedlings and showed selective activity in the varieties. The C. iria leaf and stem extracts showed comparatively higher growth inhibitory effects than those from the root. The weed extract caused more reduction in the root length of the rice plant compared to the shoot length. Among the rice varieties tested, MR232 was found to be more susceptible to the weed inhibitory effect. The leaf extract of C. iria at full strength caused root and shoot reduction of MR232 by 88.1% and 73.1% respectively (compared to the control). In most cases the fresh weight of the rice seedlings were more affected than the plant height. Weed debris caused significant reduction of leaf chlorophyll content in all the rice varieties tested with the exception of MR211. The chlorophyll content of MR232 was greatly affected by the weed debris which caused reduction of 36.4% compared to the control. The inhibitory effects of weed extracts and debris on rice growth
parameters were found to be concentration dependent.

Matched MeSH terms: Seedlings
The Inhibitory Effect of Grasshopper's Cyperus (Cyperus iria L.) on the Seedling Growth of Five Malaysian Rice Varieties

Ismail BS, Siddique MA

Trop Life Sci Res, 2011 May;22(1):81-9.
PMID: 24575211

Experiments were carried out in the laboratory and greenhouse to determine the growth inhibitory effects of Grassohopper's cyperus (Cyperus iria L.) on the seedlings of 5 Malaysian rice varieties namely MR211, MRQ74, MR220, MR84 and MR232. Three concentrations of the aqueous extract of the weed (12.5, 25.0 and 50.0 g/l) and weed debris (5, 10 and 20 g dry debris/1000 g soil) were used to test the allelopathic effect of C. iria on the growth of the rice plants. The weed leaf, stem and root extracts reduced the growth of the rice seedlings and showed selective activity in the varieties. The C. iria leaf and stem extracts showed comparatively higher growth inhibitory effects than those from the root. The weed extract caused more reduction in the root length of the rice plant compared to the shoot length. Among the rice varieties tested, MR232 was found to be more susceptible to the weed inhibitory effect. The leaf extract of C. iria at full strength caused root and shoot reduction of MR232 by 88.1% and 73.1% respectively (compared to the control). In most cases the fresh weight of the rice seedlings were more affected than the plant height. Weed debris caused significant reduction of leaf chlorophyll content in all the rice varieties tested with the exception of MR211. The chlorophyll content of MR232 was greatly affected by the weed debris which caused reduction of 36.4% compared to the control. The inhibitory effects of weed extracts and debris on rice growth parameters were found to be concentration dependent.

Matched MeSH terms: Seedlings
Effects of Environmental Factors on Growth and Artemisinin Content of Artemisia annua L

Thu BT, Van Minh T, Lim BP, Keng CL

Trop Life Sci Res, 2011 Dec;22(2):37-43.
PMID: 24575216

Seeds of two selected clones of Artemisia annua L., TC1 and TC2, were germinated in a greenhouse. Four-week-old seedlings from both clones were grown in the Thù Đúc province of Ho Chi Minh City on 2(nd) January 2009 and Đà Lat on 20(th) January 2009. During this study period in Thù Đúc province, which is situated 4-5 m above sea level, was experiencing a tropical, dry season with temperatures ranging from 26.2°C-32.8°C. Đà Lat, situated at 1500-2000 m above sea level, was having temperate, dry season with lower temperatures, ranging from 10.5°C-18.0°C. The high temperatures and low elevation in Thù Đúc Province led to slow vegetative growth for all of the plants from the two different clones and the artemisinin contents were significantly reduced. The temperate environment of Đà Lat supported robustly growing plants, with plant heights and branch lengths 4-5 times taller and longer that those planted at Thù Đúc Province. The artemisinin contents of A. annua planted at Đà Lat were 3-4 times greater than those cultivated at Thù Đúc Province. Hence, this study indicated that the variations observed in plant growth and artemisinin contents were due to temperature effects because the two selected clones were genetically homogenous. The cold weather of Đà Lat was suitable for planting of A. annua as opposed to the tropical weather of Thù Đúc Province.

Matched MeSH terms: Seedlings
Fulltext A Gate-to-gate Case Study of the Life Cycle Assessment of an Oil Palm Seedling

Muhamad H, Sahid IB, Surif S, Ai TY, May CY

Trop Life Sci Res, 2012 May;23(1):15-23.
PMID: 24575222 MyJurnal

The palm oil industry has played an important role in the economic development of Malaysia and has enhanced the economic welfare of its people. To determine the environmental impact of the oil palm seedling at the nursery stage, information on inputs and outputs need to be assessed. The oil palm nursery is the first link in the palm oil supply chain. A gate-to-gate study was carried out whereby the system boundary was set to only include the process of the oil palm seedling. The starting point was a germinated seed in a small polyethylene bag (6 in × 9 in) in which it remained until the seedling was approximately 3 to 4 months old. The seedling was then transferred into a larger polyethylene bag (12 in × 15 in), where it remained until it was 10-12 months old, when it was planted in the field (plantation). The functional unit for this life cycle inventory (LCI) is based on the production of one seedling. Generally, within the system boundary, the production of an oil palm seedling has only two major environmental impact points, the polybags used to grow the seedling and the fungicide (dithiocarbamate) used to control pathogenic fungi, as both the polybags and the dithiocarbamate are derived from fossil fuel.

Matched MeSH terms: Seedlings
Fulltext Effects of environmental factors on growth and artemisinin content of Artemisia annua L.

Bui Thi Tuong Thu, Tran Van Minh, Boey, Peng Lim, Chan, Lai Keng

Trop Life Sci Res, 2011;22(2):37-43.
MyJurnal

Seeds of two selected clones of Artemisia annua L., TC1 and TC2, were germinated in a greenhouse. Four-week-old seedlings from both clones were grown in the Thù Ðúc province of Ho Chi Minh City on 2nd January 2009 and Ðà Lat on 20 th January 2009. During this study period in Thù Ðúc province, which is situated 4–5 m above sea level, was experiencing a tropical, dry season with temperatures ranging from 26.2°C–32.8°C. Ðà Lat, situated at 1500–2000 m above sea level, was having temperate, dry season with lower temperatures, ranging from 10.5°C–18.0°C. The high temperatures and low elevation in Thù Ðúc Province led to slow vegetative growth for all of the plants from the two different clones and the artemisinin contents were significantly reduced. The temperate environment of Ðà Lat supported robustly growing plants, with plant heights and branch lengths 4–5 times taller and longer that those planted at Thù Ðúc Province. The artemisinin contents of A. annua planted at Ðà Lat were 3–4 times greater than those cultivated at Thù Ðúc Province. Hence, this study indicated that the variations observed in plant growth and artemisinin contents were due to temperature effects because the two selected clones were genetically homogenous. The cold weather of Ðà Lat was suitable for planting of A. annua as opposed to the tropical weather of Thù Ðúc Province.

Matched MeSH terms: Seedlings
Use of Pleurotus eous Strain P-31 Spent Mushroom Compost (SMC) as Soil Conditioner on the Growth and Yield Performance of Capsicum annuum L. and Solanum lycopersicon L. Seedlings under Greenhouse Conditions in Ghana

Wiafe-Kwagyan M, Odamtten GT

Trop Life Sci Res, 2018 Mar;29(1):173-194.
PMID: 29644023 DOI: 10.21315/tlsr2018.29.1.12

The objective of this study was to investigate the influence of spent mushroom compost of Pleurotus eous strain P-31 on the growth and yield performance of pepper and tomato seedlings under greenhouse conditions. Sandy loam soil was combined with different percentages of SMC to obtain the following combinations (0, 5, 10, 15, 20, 25 and 30) %. Lower concentrations SMC5, SMC10 and SMC15 promoted vegetative growth (plant height, leaf area, chlorophyll content, number of leaves and axillary branches) of the two test plants. Tomato seedlings grown in SMC10 recorded the highest plant height (50.3 ± 7.2cm); leaf area (378.8 ± 1.2cm2); number of floral buds (51) and flowers (28) whereas SMC5 recorded the highest chlorophyll content 34.1 ± 0.9CCI though SMC15 recorded the highest number of leaves (8). Tomato seedlings grown in SMC30 produced both the maximum number of fruits (8) with corresponding high weight (34.2 ± 7.7g). Pepper seedlings grown in lower concentrations (SMC5-15) recorded the highest plant heights (29.8-30.8cm), chlorophyll content (20.3CCI) and leaf area (53.5-66.2 cm2). Although the different combinations of sandy loam soil and SMC did not significantly (p ≥ 0.05) affect the number of axillary branches developed; different combinations significantly (p ≤ 0.05) affected the number of floral bud, flower and fruit, weight of fruits formed and value of each of these increased with increasing percentage of SMC. Pepper seedlings grown on SMC30 recorded the maximum number of floral buds (32.0 ± 3.6), number of flowers (19.4 ± 1.3), number of fruits (10.8 ± 1.2) and weight of fruits (31.9 ± 3.4g). Tomato seedlings raised on SMC100 (spent mushroom compost only) and soil only did not significantly (p ≥ 0.05) differ from each other however, was statistically significant (p ≤ 0.05) from amended sandy loam soil by all criteria investigated. The study shows that SMC provide favourable soil conditioners for the cultivation of fruits, vegetables and foliage crops as it improved growth and yield of tomato and pepper seedlings.

Matched MeSH terms: Seedlings
Fulltext Relationship between Ganoderma Ergosterol Concentration and Basal Stem Rot Disease Progress on Elaeis guineensis

Md Saad M, Ali NS, Meon S

Trop Life Sci Res, 2020 Apr;31(1):19-43.
PMID: 32963709 DOI: 10.21315/tlsr2020.31.1.2

Basal stem rot (BSR) is a devastating disease to Malaysian oil palm. Current techniques employed for BSR disease detection on oil palm are laborious, time consuming, costly, and subjected to accuracy limitations. An ergosterol detection method was developed, whereby it correlated well with the degree of infection in oil palm. This current study was designed to study the relationship between Ganoderma biomass, ergosterol concentration, BSR disease progress and to validate the efficiency of microwave assisted extraction (MAE) method for extraction of ergosterol compound. In addition, testing on the sensitivity of thin layer chromatography (TLC) analysis for detection of ergosterol was also the aim of this study. The optimised procedure involved extracting a small amount of Ganoderma-infected oil palm root tissues suspended in low volumes of solvent followed by irradiation in a conventional microwave oven at 70°C and medium high power for 30 s, resulting in simultaneous extraction and saponification. Based on the results obtained, MAE method may be effective in extracting low to high yields of ergosterol from infected oil palm roots demonstrating disease scale 2, 3 and 4. Positive relationship was observed between ergosterol content and inoculation period starting day 3 in the inoculated oil palm seedlings and hour 6 in germinated seeds. TLC analysis demonstrated a good correlation with high performance liquid chromatography (HPLC) quantification. Therefore, a semi-quantitative TLC analysis may be applied for handling a large amount of samples during onset field survey.

Matched MeSH terms: Seedlings
Controls on foliar aluminium accumulation among populations of the tropical shrub Melastoma malabathricum L. (Melastomataceae)

Khairil M, Burslem DFRP

Tree Physiol, 2018 11 01;38(11):1752-1760.
PMID: 30137635 DOI: 10.1093/treephys/tpy082

Aluminium (Al) accumulation is a common trait expressed in at least 60 plant families and particularly prevalent in tropical woody plants. However, the functional significance and genetic or physiological controls on Al accumulation are currently unknown. We tested the hypothesis that differential expression of Al accumulation among wild populations of the Al-accumulating tropical shrub Melastoma malabathricum L. is associated with habitat-related variation in total and exchangeable soil Al concentrations. Mature leaves and seeds were sampled from 20 populations of M. malabathricum growing in six habitats across Peninsular Malaysia, and soil was collected from each site. The seeds were grown in hydroponic solutions comprising 50% Hoagland's solution amended with Al in the form of 1.0 mM AlCl3 to test the hypothesis that differential expression of foliar Al accumulation is an inherited trait. Foliar Al concentrations varied significantly among populations, but were not consistently different among plants growing in different habitats and showed no relationship to total or exchangeable Al concentrations in soils collected at the 20 sites. Mean foliar Al concentration in wild plants was positively correlated with foliar calcium (Ca) concentrations, and with total soil nitrogen (N), Ca and magnesium (Mg) concentrations, across the 20 populations, and Al addition increased foliar concentrations of phosphorus, Ca, Mg and potassium in seedlings. The differential expression of Al accumulation in M. malabathricum populations is uncoupled to local variation in soil Al concentrations, but may be sensitive to local soil-related variation in the availability of other macro-nutrients, in particular N, Ca and Mg. Further research on the factors controlling Al uptake should focus on the plasticity of this trait within populations of Al accumulators and interactions with micro-habitat variation in the availability of the macronutrient cations.

Matched MeSH terms: Seedlings
High CO2 concentration increases relative leaf carbon gain under dynamic light in Dipterocarpus sublamellatus seedlings in a tropical rain forest, Malaysia

Tomimatsu H, Iio A, Adachi M, Saw LG, Fletcher C, Tang Y

Tree Physiol, 2014 Sep;34(9):944-54.
PMID: 25187569 DOI: 10.1093/treephys/tpu066

Understory plants in tropical forests often experience a low-light environment combined with high CO2 concentration. We hypothesized that the high CO2 concentration may compensate for leaf carbon loss caused by the low light, through increasing light-use efficiency of both steady-state and dynamic photosynthetic properties. To test the hypothesis, we examined CO2 gas exchange in response to an artificial lightfleck in Dipterocarpus sublamellatus Foxw. seedlings under contrasting CO2 conditions: 350 and 700 μmol CO2 mol(-1) air in a tropical rain forest, Pasoh, Malaysia. Total photosynthetic carbon gain from the lightfleck was about double when subjected to the high CO2 when compared with the low CO2 concentration. The increase of light-use efficiency in dynamic photosynthesis contributed 7% of the increased carbon gain, most of which was due to reduction of photosynthetic induction to light increase under the high CO2. The light compensation point of photosynthesis decreased by 58% and the apparent quantum yield increased by 26% at the high CO2 compared with those at the low CO2. The study suggests that high CO2 increases photosynthetic light-use efficiency under both steady-state and fluctuating light conditions, which should be considered in assessing the leaf carbon gain of understory plants in low-light environments.

Matched MeSH terms: Seedlings/metabolism
Fulltext Combining ability for germination traits in Jatropha curcas L

Islam AK, Anuar N, Yaakob Z, Ghani JA, Osman M

ScientificWorldJournal, 2013;2013:935981.
PMID: 24222756 DOI: 10.1155/2013/935981

Six parents of Jatropha curcas were crossed in half diallel fashion, and the F 1s were evaluated to determine the combining ability for nine germination parameters. The ratio between general combining ability (GCA) and specific combining ability (SCA) variances indicated preponderance of additive gene action for all the characters except germination percentage, time of 50% germination, seedling length, and seedling vigor index. The parents P 1 and P 2 were the best general combiner for most of the characters studied. The cross P 1 × P 5 was the best specific combiner for speed of emergence, germination percentage, germination energy, germination index, and seedling vigor index, the cross P 2 × P 5 for mean germination time, time of 50% germination, and seedling length, and the cross P 4 × P 5 for number of days to first germination. The germination percentage varied from 58.06 to 92.76% among the parents and 53.43 to 98.96% among the hybrids. The highest germination (98.96%) was observed in hybrid P 2 × P 4, and none of the hybrids or parents showed 100% germination. The highest germination index (GI) and seedling vigor index (SVI) were found in hybrid P 1 × P 5 and P 2 × P 5, respectively. The results of this study provide clue for the improvement of Jatropha variety through breeding program.

Matched MeSH terms: Seedlings/growth & development
Control of Basal Stem Rot Disease in Oil Palm by Supplementation of Calcium, Copper, and Salicylic Acid

Bivi MS, Paiko AS, Khairulmazmi A, Akhtar MS, Idris AS

Plant Pathol J, 2016 Oct;32(5):396-406.
PMID: 27721689

Continuous supplementation of mineral nutrients and salicylic acid (SA) as foliar application could improve efficacy in controlling basal stem rot (BSR) disease in oil palm seedling. It is revealed from the results that the highest disease severity index (58.3%) was recorded in T8 treatments at 9 months after inoculation. The best disease control was achieved by T7 treatments (calcium/copper/SA [Ca/Cu/SA]) (5.0%) followed by T1 (5.5%), T5 (5.8%), T3 (8.3%), T6 (8.3%), T4 (13.3%), and T2 (15.8%) treatments. Continuous supplementation of Ca/Cu/SA was found to be the most effective in controlling the disease and the high performance liquid chromatography results showed the detection of ergosterol at very low concentration in the treated samples. Moreover, the transmission electron microscopy analysis results clearly indicated that T7 treatment was also enhancing lignification, which was responsible for the thickness of the secondary cell walls and middle lamella compared to untreated samples. It was therefore, concluded that continuous supplementation of minerals nutrients and SA could effectively suppress disease severity by reducing ergosterol activity and also improve the process of lignification in the treated plants. Furthermore, this treatment also managed to delay the onset of BSR symptoms and promote the growth of the seedlings and eventually suppress the BSR disease.

Matched MeSH terms: Seedlings
Effects of adding organic materials to an acid sulfate soil on the growth of cocoa (Theobroma cacao L.) seedlings

Shamshuddin J, Muhrizal S, Fauziah I, Husni MH

Sci Total Environ, 2004 May 5;323(1-3):33-45.
PMID: 15081715

Acid sulfate soils having a pH of less than 3.5 are widespread in Malaysia. Some of these soils are planted to cocoa, but the yield is reported to be low due to soil infertility related to Al toxicity. Cocoa growth is sensitive to the presence of Al in the soil. To a certain extent, Al toxicity in soils can be reduced by organic matter application and to a greater extent in iron-poor acid sulfate soil. A study was conducted to determine the efficacy of various types of organic materials easily available in the country to ameliorate acid sulfate soil infertility for growing cocoa seedlings. The treatments were control (nil), lime (3 t/ha), peat (10% w/w), peat plus green manure (10% w/w), peat plus rice straw (10% w/w), peat plus chicken dung (10% w/w) and peat plus POMS (Palm oil mill sludge) (10% w/w). The growth of cocoa seedlings was affected significantly by the presence of Al in the cocoa tissues. As the amount of Al in the leaves increased, the relative top dry weight of cocoa seedlings decreased. Likewise, the relative plant height was negatively correlated with Al in the leaves. Peat as well as peat in combination with green manure, rice straw, chicken dung or palm oil mill sludge was able to reduce Al toxicity in acid sulfate soil; the highest top dry weight of cocoa seedlings were obtained in the peat plus green manure treatment. The best cocoa seedlings root growth was found for the peat treatment alone. The relative top dry weight of cocoa seedlings was negatively correlated with Al(3+) as well as Al(3+)+Al(OH)(2+)+Al(OH)(2)(+) activity in the soil solution. The critical values for Al(3+) and the combination of Al(3+)+Al(OH)(2+)+Al(OH)(2)(+) activity in the soil solution were 10 microM and 15 microM, respectively.

Matched MeSH terms: Seedlings/growth & development
Fulltext Contrasting nonstructural carbohydrate dynamics of tropical tree seedlings under water deficit and variability

O'Brien MJ, Burslem DF, Caduff A, Tay J, Hector A

New Phytol, 2015 Feb;205(3):1083-94.
PMID: 25358235 DOI: 10.1111/nph.13134

Drought regimes can be characterized by the variability in the quantity of rainfall and the duration of rainless periods. However, most research on plant response to drought has ignored the impacts of rainfall variation, especially with regard to the influence of nonstructural carbohydrates (NSCs) in promoting drought resistance. To test the hypothesis that these components of drought differentially affect NSC dynamics and seedling resistance, we tracked NSC in plant tissues of tropical tree seedlings in response to manipulations of the volume and frequency of water applied. NSC concentrations decreased in woody tissues under infrequent-high watering but increased under no watering. A faster decline of growth relative to stomatal conductance in the no watering treatment was consistent with NSC accumulation as a result of an uncoupling of growth and photosynthesis, while usage of stored NSCs in woody tissues to maintain function may account for the NSC decline under infrequent-high watering. NSCs, and specifically stem NSCs, contributed to drought resistance under severe water deficits, while NSCs had a less clear role in drought resistance to variability in water availability. The contrasting response of NSCs to water variability and deficit indicates that unique processes support seedling resistance to these components of drought.

Matched MeSH terms: Seedlings/metabolism
Fulltext A pantropically introduced tree is followed by specific ectomycorrhizal symbionts due to pseudo-vertical transmission

Séne S, Selosse MA, Forget M, Lambourdière J, Cissé K, Diédhiou AG, et al.

ISME J, 2018 06;12(7):1806-1816.
PMID: 29535364 DOI: 10.1038/s41396-018-0088-y

Global trade increases plant introductions, but joint introduction of associated microbes is overlooked. We analyzed the ectomycorrhizal fungi of a Caribbean beach tree, seagrape (Coccoloba uvifera, Polygonacaeae), introduced pantropically to stabilize coastal soils and produce edible fruits. Seagrape displays a limited symbiont diversity in the Caribbean. In five regions of introduction (Brazil, Japan, Malaysia, Réunion and Senegal), molecular barcoding showed that seagrape mostly or exclusively associates with Scleroderma species (Basidiomycota) that were hitherto only known from Caribbean seagrape stands. An unknown Scleroderma species dominates in Brazil, Japan and Malaysia, while Scleroderma bermudense exclusively occurs in Réunion and Senegal. Population genetics analysis of S. bermudense did not detect any demographic bottleneck associated with a possible founder effect, but fungal populations from regions where seagrape is introduced are little differentiated from the Caribbean ones, separated by thousands of kilometers, consistently with relatively recent introduction. Moreover, dry seagrape fruits carry Scleroderma spores, probably because, when drying on beach sand, they aggregate spores from the spore bank accumulated by semi-hypogeous Scleroderma sporocarps. Aggregated spores inoculate seedlings, and their abundance may limit the founder effect after seagrape introduction. This rare pseudo-vertical transmission of mycorrhizal fungi likely contributed to efficient and repeated seagrape/Scleroderma co-introductions.

Matched MeSH terms: Seedlings/microbiology; Seedlings/physiology
Estimates of general combining ability in Hevea breeding at the Rubber Research Institute of Malaysia : I. Phases II and III A

Tan H

Theor Appl Genet, 1977 Jan;50(1):29-34.
PMID: 24407495 DOI: 10.1007/BF00273794

Estimates of general combining ability of parents for yield and girth obtained separately from seedlings and their corresponding clonal families in Phases II and IIIA of the RRIM breeding programme are compared. A highly significant positive correlation (r = 0.71***) is found between GCA estimates from seedling and clonal families for yield in Phase IIIA, but not in Phase II (r = -0.03(NS)) nor for girth (r= -0.27(NS)) in Phase IIIA. The correlations for Phase II yield and Phase IIIA girth, however, improve when the GCA estimates based on small sample size or reversed rankings are excluded.When the best selections (based on present clonal and seedling information) are compared, all five of the parents top-ranking for yield are common in Phase IIIA but only two parents are common for yield and girth in Phases II and IIIA respectively. However, only one parent for yield in Phase II and two parents for girth in Phase IIIA would, if selected on clonal performance, have been omitted from the top ranking selections made by previous workers using seedling information.These findings, therefore, justify the choice of parents based on GCA estimates for yield obtained from seedling performance. Similar justification cannot be offered for girth, for which analysis is confounded by uninterpretable site and seasonal effects.

Matched MeSH terms: Seedlings
Fulltext Formulation of Trichoderma sp. SL2 inoculants using different carriers for soil treatment in rice seedling growth

Doni F, Isahak A, Che Mohd Zain CR, Mohd Ariffin S, Wan Mohamad WN, Wan Yusoff WM

Springerplus, 2014;3:532.
PMID: 25279323 DOI: 10.1186/2193-1801-3-532

BACKGROUND: Trichoderma sp. SL2 has been previously reported to enhance rice germination, vigour, growth and physiological characteristics. The use of Potato Dextrose Agar as carrier of Trichoderma sp. SL2 inoculant is not practical for field application due to its short shelf life and high cost. This study focuses on the use of corn and sugarcane bagasse as potential carriers for Trichoderma sp. SL2 inoculants.
FINDINGS: A completely randomized design was applied for this study. Trichoderma sp. SL2 suspension mixed with corn and sugarcane bagasse were used as treatment mixture in soil. Growth parameters including rice seedling height, root length, wet weight, leaf number and biomass were measured and compared to control. The results showed that Trichoderma sp. SL2 mixed with corn significantly enhanced rice seedlings root length, wet weight and biomass compared to Trichoderma sp. SL2 mixed with sugarcane bagasse and control.
CONCLUSION: Corn can be a potential carrier for Trichoderma spp. inoculants for field application.

Matched MeSH terms: Seedlings
Fulltext Efficacy of KNO3, SiO2 and SA priming for improving emergence, seedling growth and antioxidant enzymes of rice (Oryza sativa), under drought

Ali LG, Nulit R, Ibrahim MH, Yien CYS

Sci Rep, 2021 Feb 16;11(1):3864.
PMID: 33594103 DOI: 10.1038/s41598-021-83434-3

Rice is an important staple crop produced and consumed worldwide. However, poor seed emergence is one of the main impediments to obtaining higher yield of rice especially in hot and dry ecosystems of the world that are ravaged by drought. Therefore, this study was carried out to evaluate the effects of potassium nitrate (KNO3), salicylic acid (SA) and silicon dioxide (SiO2) priming in improving emergence, seedling growth, biochemical attributes and antioxidant activities of FARO44 rice under drought conditions. Rice seedlings primed with 2.5% and 5% KNO3, 3% and 3.5% SiO2, and 1 mM and 2.5 mM SA were subjected to three drought levels of low, moderate and severe under the greenhouse. Seed emergence, seedling growth, biochemical attributes and antioxidant activities were thereafter evaluated. Seed priming experiments were laid in a completely randomized design with five replicates per treatment. The results found that rice seedlings responded differently to different priming treatments. However, all primed rice seedlings had significantly (P ≤ 0.05) improved emergence percentage (72-92%), seedling growth, seedling vigor, seedling fresh and dry biomass and shorter emergence time compared with controls. Likewise, total soluble protein content, activities of catalase, ascorbate peroxidase and superoxide dismutase, carbohydrate, soluble sugar and total chlorophyll contents of rice seedlings were increased by more than two-folds by seed priming compared with control. Salicylic acid showed less effect in increasing emergence, seedling growth, antioxidant activities and biochemical attributes of rice. Thus, this study established that seed priming with KNO3 (2.5% and 5%) and SiO2 (3% and 3.5%) were more effective in improving emergence, seedling growth, biochemical attributes and antioxidant activities of FARO44. Thus, priming of FARO44 rice with this chemical is recommended for fast emergence, seedling growth and drought resistance in dry ecosystems.

Matched MeSH terms: Seedlings/growth & development
Fulltext Identification of non-ribosomal peptide synthetase in Ganoderma boninense Pat. that was expressed during the interaction with oil palm

Shokrollahi N, Ho CL, Zainudin NAIM, Wahab MABA, Wong MY

Sci Rep, 2021 Aug 11;11(1):16330.
PMID: 34381084 DOI: 10.1038/s41598-021-95549-8

Basal stem rot (BSR) of oil palm is a disastrous disease caused by a white-rot fungus Ganoderma boninense Pat. Non-ribosomal peptides (NRPs) synthesized by non-ribosomal peptide synthetases (NRPSs) are a group of secondary metabolites that act as fungal virulent factors during pathogenesis in the host. In this study, we aimed to isolate NRPS gene of G. boninense strain UPMGB001 and investigate the role of this gene during G. boninense-oil palm interaction. The isolated NRPS DNA fragment of 8322 bp was used to predict the putative peptide sequence of different domains and showed similarity with G. sinense (85%) at conserved motifs of three main NRPS domains. Phylogenetic analysis of NRPS peptide sequences demonstrated that NRPS of G. boninense belongs to the type VI siderophore family. The roots of 6-month-old oil palm seedlings were artificially inoculated for studying NRPS gene expression and disease severity in the greenhouse. The correlation between high disease severity (50%) and high expression (67-fold) of G. boninense NRPS gene at 4 months after inoculation and above indicated that this gene played a significant role in the advancement of BSR disease. Overall, these findings increase our knowledge on the gene structure of NRPS in G. boninense and its involvement in BSR pathogenesis as an effector gene.

Matched MeSH terms: Seedlings/genetics; Seedlings/metabolism

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