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Fulltext Implications of Organic Matter Input, Sedimentary Environmental Conditions, and Gas Generation Potential of the Organic-Rich Shale in the Onshore Jiza-Qamar Basin, Yemen

Hakimi MH, Kahal A, Rahim A, Naseem W, Alsomid W, Al-Buraihi A, et al.

ACS Omega, 2023 Aug 22;8(33):30483-30499.
PMID: 37636926 DOI: 10.1021/acsomega.3c03691

The Jiza-Qamar Basin is one of the most important exploration sedimentary basins in Yemen. For over a decade, the exploration of hydrocarbons has been occurring in this basin. Late Cretaceous age rocks are the most occurring organic-rich sediments in this basin, including coals, coaly shales, and shales. The studied organic-rich shale beds are from the Late Cretaceous Mukalla Formation and associated with coal seams. These organic-rich shales can serve as source rocks for hydrocarbon generation potential. The current study investigates the geochemical characteristics, including assessing the organic matter (OM) input, sedimentary environmental conditions, and hydrocarbon generation potential of the organic-rich shale within the Mukalla Formation from three well locations in the onshore Jiza-Qamar Basin using organic geochemistry, biomarker, and carbon isotope measurements. The studied shale samples have high OM content with total organic carbon values between 0.74 and 19.48 wt %. Furthermore, they contain mainly hydrogen-poor Types III and IV kerogen, indicating the presence of the gas-prone source rock. The presence of these types of kerogen indicates the abundance of vitrinite and inertinite macerals, as established by microscopic investigation. However, the studied organic-rich shales had biomarker features, including high Ph/Ph ratio between 3.82 and 7.46, high Tm/Ts ratio of more than 7, and high C29 regular steranes compared to C27 and C28 regular steranes. Apart from the biomarker results, the studied Mukalla shales are characterized by the abundance of land-derived OM that deposited in fluvial to fluvial deltaic environments under highly oxic conditions. The finding of the considerable concentration of terrigenous OM is probably confirmed by the bulk carbon isotope and maceral composition data. The maturity indicators show that the examined organic-rich shale samples in the studied wells exhibit low VR values of up to 0.71%, and thereby, they have not been yet reached the high maturity for gas generation. This low maturity level in the studied wells is probably attributed to shallow burial depth, exhibiting depth of up to 2835 m. Therefore, the substantial gas exploration operations from the organic-rich shale source rock system of the Late Cretaceous Mukalla Formation can be recommended in the deeper stratigraphic succession in the offshore Jiza-Qamar Basin.
Fulltext Ultrasonographic findings in eyes with retinopathy of prematurity in malaysia

Lee KF, Abdul Rahim A, Raja Azmi MN, Wan Hazabbah WH, Embong Z, Noramazlan R, et al.

Med J Malaysia, 2013;68(1):39-43.
PMID: 23466765 MyJurnal

RetCam is an excellent screening tool for the detection of retinopathy of prematurity (ROP). However, affordability is a barrier when adopting the use of RetCam in developing countries. We aimed to describe different stages of ROP using ultrasonographic B-scan and to evaluate the association between funduscopic examinations and ultrasonographic B-scan findings in premature neonates with ROP in Malaysia. A descriptive cross sectional study was conducted in 90 eyes of 47 premature neonates with different stages of ROP in three tertiary hospitals in Malaysia. Experienced ophthalmologists performed detailed funduscopic examinations using binocular indirect ophthalmoscopy (BIO). A masked examiner performed a 10 MHz ultrasonographic B-scan evaluation with 12 meridian position images within 48 hours of clinical diagnosis. Data from the clinical examination and ultrasonographic findings were collected and analysed. We recruited 37 eyes (41.1%) with stage 1 ROP, 29 eyes (32.3%) with stage 2, 18 eyes (20.0%) with stage 3, and 3 eyes (3.3%) with stages 4 and 5 based on the clinical assessment. Ultrasonography correctly identified 3 (8.1%) stage 1 eyes, 17 (58.6%) stage 2 eyes, 13 (72.2%) stage 3 eyes, and 3 each (100%) of the stage 4 and 5 eyes. There was a significant association between the funduscopic signs and the ultrasound findings for stage 2 ROP and above (Fisher's exact test, p <0.001). In conclusion, all stages of ROP were detected and described with a 10 MHz ultrasonic B-scan system. A significant association was observed between funduscopic signs and ultrasonographic findings in premature Malaysian neonates with stage 2 ROP and above.
Capacity development and safety measures for health care workers exposed to COVID-19 in Bangladesh

Nath TK, Paul A, Sikdar D, Mahanta J, Paul S, Amin MR, et al.

BMC Health Serv Res, 2021 Oct 11;21(1):1079.
PMID: 34635110 DOI: 10.1186/s12913-021-07071-2

BACKGROUND: The safety of health care workers (HCWs) in Bangladesh and the factors associated with getting COVID-19 have been infrequently studied. The aim of this study was to address this gap by assessing the capacity development and safety measures of HCWs in Bangladesh who have been exposed to COVID-19 and by identifying the factors associated with respondents' self-reported participation in capacity development trainings and their safety practices.
METHODS: This cross-sectional study was based on an online survey of 811 HCWs working at 39 dedicated COVID-19 hospitals in Bangladesh. A pretested structured questionnaire consisting of questions related to respondents' characteristics, capacity development trainings and safety measures was administered. Binary logistic regressions were run to assess the association between explanatory and dependent variables.
RESULTS: Among the respondents, 58.1% had been engaged for at least 2 months in COVID-19 care, with 56.5% of them attending capacity development training on the use of personal protective equipment (PPE), 44.1% attending training on hand hygiene, and 35% attending training on respiratory hygiene and cough etiquette. Only 18.1% reported having read COVID-19-related guidelines. Approximately 50% of the respondents claimed that there was an inadequate supply of PPE for hospitals and HCWs. Almost 60% of the respondents feared a high possibility of becoming COVID-19-positive. Compared to physicians, support staff [odds ratio (OR) 4.37, 95% confidence interval (CI) 2.25-8.51] and medical technologists (OR 8.77, 95% CI 3.14-24.47) were more exhausted from working in COVID-19 care. Respondents with longer duty rosters were more exhausted, and those who were still receiving infection prevention and control (IPC) trainings were less exhausted (OR 0.54, 95% CI 0.34-0.86). Those who read COVID-19 guidelines perceived a lower risk of being infected by COVID-19 (OR 0.44, 95% CI 0.29-0.67). Compared to the respondents who strongly agreed that hospitals had a sufficient supply of PPE, others who disagreed (OR 2.68, 95% CI 1.31-5.51) and strongly disagreed (OR 5.05, 95% CI 2.15-11.89) had a higher apprehension of infection by COVID-19.
CONCLUSION: The findings indicated a need for necessary support, including continuous training, a reasonable duty roster, timely diagnosis of patients, and an adequate supply of quality PPE.
Fulltext High sulphur oil of Type II kerogen of the oil shales from Western Central Jordan based on molecular structure and kinetics

Hakimi MH, Alqudah M, Mustapha KA, Kahal AY, Lathbl MA, Rahim A, et al.

Sci Rep, 2024 Aug 16;14(1):19033.
PMID: 39152178 DOI: 10.1038/s41598-024-68416-5

Organic rich sedimentary rocks of the Late Cretaceous Muwaqqar Formation from the Lajjun outcrop in the Lajjun Sub-basin, Western Central Jordan were geochemically analyzed. This study integrates kerogen microscopy of the isolated kerogen from 10 oil shale samples with a new finding from unconventional geochemical methods [i.e., ultimate elemental (CHNS), fourier transform infrared spectroscopy and pyrolysis-gas chromatography (Py-GC)] to decipher the molecular structure of the analyzed isolated kerogen fraction and evaluate the kerogen composition and characteristics. The optical kerogen microscopy shows that the isolated kerogen from the studied oil shales is originated from marine assemblages [i.e., algae, bituminite and fluorescence amorphous organic matter] with minor amounts of plant origin organic matter (i.e., spores). This finding suggests that the studied kerogen is hydrogen-rich kerogen, and has the potential to generate high paraffinic oil with low wax content. The dominance of such hydrogen-rich kerogen (mainly Type II) was confirmed from the multi-geochemical ratios, including high hydrogen/carbon atomic of more than 1.30 and high A-factor of more than 0.60. This claim agrees with the molecular structure of the kerogen derived from Py-GC results, which suggest that the studied kerogen is mainly Type II-S kerogen exhibiting the possibility of producing high sulphur oils during earlier stages of diagenesis, according to bulk kinetic modeling. The kinetic models of the isolated kerogen fraction suggest that the kerogen conversion, in coincidence with a vitrinite reflectance range of 0.55-0.60%, commenced at considerably lower temperature value ranges between 100 and 106 °C, which have produced oils during the early stage of oil generation. The kinetic models also suggest that the commercial amounts of oil can generate by kerogen conversion of up to 50% during the peak stage of oil window (0.71-0.83%) at relatively low geological temperature values in the range of 122-138 °C. Therefore, further development of the Muwaqqar oil shale successions is highly approved in the shallowly buried stratigraphic succession in the Lajjun Sub-basin, Western Central Jordan.
Fulltext Adherence to Clinical Practice Guidelines (CPG) management of dengue infection in adults (revised 2nd edition)

Abd Rahman M, Ahmad Zaki R, Sarimin R, Ariff MI, Suli Z, Mahmud M, et al.

PLoS One, 2017;12(11):e0184559.
PMID: 29095822 DOI: 10.1371/journal.pone.0184559

The Malaysian Dengue Clinical Practice Guidelines (CPG) have been developed to provide evidence-based guidance in the management of dengue infections. The use of these guidelines is essential to ensure its recommendations are being practiced. However, the adherence to the guidelines for management of dengue (revised 2nd edition) by healthcare providers still remains unknown. Therefore, the aim of this study was to evaluate the proportion among healthcare providers that adhere to this Dengue CPG. A retrospective cohort study of dengue cases registered from 1 January 2014 to 1 June 2015 was conducted in public hospitals and health clinics in Selangor, Putrajaya and Kuala Lumpur. Adherence to the CPG recommendations were recorded by reviewing patients' case notes. Overall proportion of adherence in clinical components of the recommendation were (7.1 to 100.0% versus 7.7 to 73.8%) in history taking, (6.7 to 100.0% versus 12.3 to 60.0%) in physical examinations, (18.4 to 100.0% versus 23.1 to 83.2%) in assessment of warning signs, (0.6 to 100.0% versus 12.3 to 87.7%) in assessment of haemodynamic status, (60.0 to 100.0% versus 27.7 to 40.0%) in diagnosis, (46.6 to 80.0% versus 52.3%) in case notifications, (73.2 to 100.0% versus 89.2 to 96.9%) in performing specific laboratory investigations and (7.9 to 100.0% versus 21.5%) in monitoring, for outpatient versus inpatient, respectively. Adherence trends were demonstrated to be higher in hospital settings compared to outpatient settings. Adherence to this Dengue CPG varies widely with overall good clinical outcomes observed.

Study site: public hospitals and health clinics in Selangor, Putrajaya and Kuala Lumpur