Displaying publications 1 - 20 of 79 in total

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  1. Phylogeny and biogeography of Bent-toed Geckos (Cyrtodactylus Gray) of the Sundaic swamp clade
    Grismer LL, Davis HR
    Zootaxa, 2018 Sep 10;4472(2):365-374.
    PMID: 30313374 DOI: 10.11646/zootaxa.4472.2.9
    The Sundaic swamp clade of the genus Cyrtodactylus contains nine species that collectively range through Peninsular Malaysia and its associated land bridge islands, Singapore, Sumatra, Java, and Pulau Natuna Besar. Ancestral range reconstruction analyses using BioGeoBEARS based on an updated molecular phylogeny of the nine Sundaic swamp clade species of Cyrtodactylus demonstrated that this lineage evolved in Peninsular Malaysia, dispersed independently to Sumatra and Pulau Natuna Besar, Indonesia and most likely back into Peninsular Malaysia from Sumatra. This scenario is consistent with climate-driven, cyclical, ephemeral, geographic reconfigurations of Sundaic landmasses from at least the mid-Miocene to present.
  2. An updated and annotated checklist of the lizards of Peninsular Malaysia, Singapore, and their adjacent archipelagos
    Grismer LL, Quah ESH
    Zootaxa, 2019 Jan 17;4545(2):230-248.
    PMID: 30790898 DOI: 10.11646/zootaxa.4545.2.4
    Since the book-formatted, monographic treatment of the lizards of Peninsular Malaysia, Singapore, and their adjacent islands by Grismer (2011), 47 additional species have been added to that fauna bringing the total to 174. One species, Cyrtodactylus stresemanni, was removed from the lizard fauna based on its likely mislabeled type locality; 44 species were described as new-29 gekkonids, 11 scincids, five agamids, and one dibamid; and three others, Cnemaspis narathiwatensis, Cyrtodactylus brevipalmatus, and Scincella melanosticta were recently discovered in northern Peninsular Malaysia. Taxonomic changes for seven previously described species occurring after 2011 are noted and significant, new locality records are documented here for additional species. The intent of this review is to provide an up to date peer-reviewed checklist for the lizard species of this region prior to a pending updated book monograph.
  3. Fulltext To split or not to split? Multilocus phylogeny and molecular species delimitation of southeast Asian toads (family: Bufonidae)
    Chan KO, Grismer LL
    BMC Evol. Biol., 2019 04 25;19(1):95.
    PMID: 31023232 DOI: 10.1186/s12862-019-1422-3
    BACKGROUND: Recent studies have demonstrated that Bayesian species delimitation based on the multispecies coalescent model can produce inaccurate results by misinterpreting population splits as species divergences. An approach based on the genealogical divergence index (gdi) was shown to be a viable alternative, especially for delimiting allopatric populations where gene flow is low. We implemented these analyses to assess species boundaries in Southeast Asian toads, a group that is understudied and characterized by numerous unresolved species complexes.

    RESULTS: Multilocus phylogenetic analyses showed that deep evolutionary relationships including the genera Sigalegalephrynus, Ghatophryne, Parapelophryne, Leptophryne, Pseudobufo, Rentapia, and Phrynoides remain unresolved. Comparison of genetic divergences revealed that intraspecific divergences among allopatric populations of Pelophyrne signata (Borneo vs. Peninsular Malaysia), Ingerophrynus parvus (Peninsular Malaysia vs. Myanmar), and Leptophryne borbonica (Peninsular Malaysia, Java, Borneo, and Sumatra) are consistent with interspecific divergences of other Southeast Asian bufonid taxa. Conversely, interspecific divergences between Pelophryne guentheri/P. api, Ansonia latiffi/A. leptopus, and I. gollum/I. divergens were low (

  4. The Rediscovery of Sphenomorphus malayanus Doria, 1888 (Squamata: Scincidae) from the Titiwangsa Mountain Range of Peninsular Malaysia and its re-description as S. senja sp. nov
    Grismer LL, Quah ES
    Zootaxa, 2015;3931(1):63-70.
    PMID: 25781814 DOI: 10.11646/zootaxa.3931.1.4
    The discovery of an additional specimen of Sphenomorphus malayanus Doria, 1888 from Gunung Brinchang, Cameron Highlands, Pahang in Peninsular Malaysia reveals that it is not conspecific with the type specimen from Gunung Singgalan, West Sumatra, 600 km to the south. The new specimen and an additional specimen previously collected from Gunung Gerah, Perak, Peninsular Malaysia, 56 km to the north, are described here as the new species S. senja sp. nov. and differ from S. malayanus by having a larger SVL (60.0-65 mm versus 53 mm); a deeply recessed as opposed to a shallow tympanum; 72 or 73 versus 76 paravertebral scales; eight or nine superciliary scales as opposed to 10; and the posteriormost superciliary scale being large as opposed to small. Cameron Highlands is unique among other upland areas in Peninsular Malaysia in that it harbors an unprecedented number of closely related ecological equivalents living in close sympatry or syntopy.
  5. Skink stargazing: On the status and taxonomy of the Sphenomorphus stellatus complex (Boulenger, 1900) in Borneo, with the description of a new species (Squamata: Scincidae)
    Quah ESH, Grismer LL
    Zootaxa, 2025 Mar 20;5609(2):193-214.
    PMID: 40174155 DOI: 10.11646/zootaxa.5609.2.3
    Sphenomorphus stellatus was once thought to be a wide-ranging species distributed across many parts of Indochina, the Thai-Malay Peninsula and Borneo. However, recent integrative taxonomic studies on the species have revealed its underestimated diversity and new species previously masquerading under this nomen in mainland Southeast Asia. This prompted the re-examination of a specimen identified as S. stellatus from Borneo, and morphological analyses revealed that it is not conspecific with topotypic specimens of the species from Peninsular Malaysia or other congeners of the complex, and is therefore described herein as new. Sphenomorphus striatafaucium sp. nov. can be differentiated from its congeners by a combination of known adult SVL of 57.4 mm; frontal scale undivided; prefrontals in broad contact; four supraoculars; two loreals; eight superciliaries; no enlarged, clear, central window in lower eyelid; seven or eight supralabials; six infralabials; three pairs of chinshields; 24 midbody scale rows; 62 paravertebrals, not wider than other dorsals; 66 ventrals; two enlarged precloacals; 19 subdigital lamellae on fourth toe; and bold and distinct striped pattern on the chin and throat. The discovery of S. striatafaucium sp. nov. increases the number of endemic Sphenomorphus skinks in Borneo to 13 species. The discovery underscores the underestimated diversity of reptile and amphibian species in Borneo, and the need for more concerted efforts to conduct fieldwork and systematic studies to not only improve the understanding of their relationships and ecologies, but also better protect their habitats that are increasingly threatened by anthropogenic pressures. This study also highlights the value of well-curated natural history collections in museums that still harbour new species awaiting discovery.
  6. Comprehensive multi-locus phylogeny of Old World tree frogs (Anura: Rhacophoridae) reveals taxonomic uncertainties and potential cases of over- and underestimation of species diversity
    Chan KO, Grismer LL, Brown RM
    Mol Phylogenet Evol, 2018 10;127:1010-1019.
    PMID: 30030179 DOI: 10.1016/j.ympev.2018.07.005
    The family Rhacophoridae is one of the most diverse amphibian families in Asia, for which taxonomic understanding is rapidly-expanding, with new species being described steadily, and at increasingly finer genetic resolution. Distance-based methods frequently have been used to justify or at least to bolster the recognition of new species, particularly in complexes of "cryptic" species where obvious morphological differentiation does not accompany speciation. However, there is no universally-accepted threshold to distinguish intra- from interspecific genetic divergence. Moreover, indiscriminant use of divergence thresholds to delimit species can result in over- or underestimation of species diversity. To explore the range of variation in application of divergence scales, and to provide a family-wide assessment of species-level diversity in Old-World treefrogs (family Rhacophoridae), we assembled the most comprehensive multi-locus phylogeny to date, including all 18 genera and approximately 247 described species (∼60% coverage). We then used the Automatic Barcode Gap Discovery (ABGD) method to obtain different species-delimitation schemes over a range of prior intraspecific divergence limits to assess the consistency of divergence thresholds used to demarcate current species boundaries. The species-rich phylogeny was able to identify a number of taxonomic errors, namely the incorrect generic placement of Chiromantis inexpectatus, which we now move to the genus Feihyla, and the specific identity of Rhacophorus bipunctatus from Peninsular Malaysia, which we tentatively reassign to R. rhodopus. The ABGD analysis demonstrated overlap between intra- and interspecific divergence limits: genetic thresholds used in some studies to synonymize taxa have frequently been used in other studies to justify the recognition of new species. This analysis also highlighted numerous groups that could potentially be split or lumped, which we earmark for future examination. Our large-scale and en bloc approach to species-level phylogenetic systematics contributes to the resolution of taxonomic uncertainties, reveals possible new species, and identifies numerous groups that require critical examination. Overall, we demonstrate that the taxonomy and evolutionary history of Old-World tree frogs are far from resolved, stable or adequately characterized at the level of genus, species, and/or population.
  7. A new species of Hemiphyllodactylus Bleeker, 1860 (Squamata: Gekkonidae) from northwestern Thailand
    Grismer LL, Wood PL, Cota M
    Zootaxa, 2014;3760:67-78.
    PMID: 24870072 DOI: 10.11646/zootaxa.3760.1.4
    A new species of gekkonid, Hemiphyllodactylus chiangmaiensis sp. nov., from northwestern Thailand is separated from all other species of Hemiphyllodactylus by a set of features including: a maximum SVL of 41.2 mm; 8-12 chin scales extending transversely from unions of second and third infralabials and posterior margin of mental; lamellar formula on hand 3-3-3-3 or 3-4-3-3; lamellar formula on foot 3-3-3-3 or 3-4-4-4; continuous precloacal and femoral pores; a unique dorsal color pattern; and caecum and oviducts pigmented. These characters place this species in the speciose H. typus group. Hemiphyllodactylus chiangmaiensis sp. nov. fills a biogeographical hiatus in the distribution of this genus across northern Indochina.
  8. New species of Bakeria (Nematoda; Strongylida; Molineidae), new species of Falcaustra (Nematoda; Ascaridida; Kathlaniidae) and other helminths in Cnemaspis mcguirei (Sauria; Gekkonidae) from Peninsular Malaysia
    Bursey CR, Goldberg SR, Grismer LL
    Acta Parasitol, 2014 Oct;59(4):643-52.
    PMID: 25236275 DOI: 10.2478/s11686-014-0299-y
    Two new nematode species, Bakeria schadi sp. nov. and Falcaustra malaysiaia sp. nov. from the gastrointestinal tract of McGuire's rock gecko, Cnemaspis mcguirei (Sauria: Gekkonidae) collected in Peninsular Malaysia are described. The two species now assigned to Bakeria are separated on the bases of male bursa type and location of the excretory pore: type II in B. schadi sp. nov. and type I in B. bakeri; location of excretory pore, anterior to nerve ring in B. schadi sp. nov. and posterior to nerve ring in B. bakeri. Falcaustra malaysiaia sp. nov. is most similar to F. chabaudi, F. concinnae, F. condorcanquii, F. barbi, F. dubia, and F. tchadi in that these 7 species possess 1 pseudosucker, 1 median papilla plus 10 pairs caudal papillae, and spicules with lengths between 1 and 2 mm. F. barbi and F. tchadi lack adcloacal papillae; the remaining 5 species possess 1 pair of adcloacal papillae. Falcaustra chabaudi is known from Nearctic salamanders; F. concinnae from Nearctic turtles; F. condorcanquii from Neotropical frogs, F. dubia from Oriental frogs, and F. malaysiaia sp. nov. from Oriental geckos. Two additional species of Nematoda were found, Cosmocerca ornata and Meteterakis singaporensis. Cnemaspis mcguirei represents a new host record for Cosmocerca ornata and Meteterakis singaporensis.
  9. Reappraisal of the Javanese Bullfrog complex, Kaloula baleata (Müller, 1836) (Amphibia: Anura: Microhylidae), reveals a new species from Peninsular Malaysia
    Chan KO, Grismer LL, Brown RM
    Zootaxa, 2014;3900(4):569-80.
    PMID: 25543757 DOI: 10.11646/zootaxa.3900.4.7
    A new species of Narrow-mouthed frog of the genus Kaloula is described from northern Peninsular Malaysia. Kaloula latidisca sp. nov. is genetically and morphologically most similar to K. baleata and K. indochinensis but differs from those and other congeners by the unique combination of the following characters: (1) adult males SVL 49.2-56.2 mm (x̅=53.5 ± 3.0; N=4); (2) finger tips expanded into large, transversely expanded discs (disc width 2.8-3.1 mm, x̅=3.0 ± 0.1); (3) inner metatarsal tubercle large, oval, distinctly raised, slightly shorter than first toe; (4) three subarticular tubercles on fourth toe; (5) toe webbing formula: I 1-2 II 1-3 III 2-3.5 IV 4-2 V; and (6) yellow to orange irregularly shaped patch on the axillary, inguinal and posterior region of thigh.
  10. A new species of Spauligodon (Nematoda: Oxyuroidea: Pharyngodonidae) in Cyrtodactylus bintangrendah (Sauria: Gekkonidae) from Peninsular Malaysia
    Bursey CR, Goldberg SR, Grismer LL
    J Parasitol, 2014 Jun;100(3):317-22.
    PMID: 24450328 DOI: 10.1645/13-410.1
    Spauligodon bintangensis n. sp. from the intestines of Cyrtodactylus bintangrendah (Gekkonidae) from Peninsular Malaysia is described and illustrated. Spauligodon bintangensis n. sp. represents the 51st species assigned to the genus and the first species from the Oriental Region. The new species is most similar to Spauligodon atlanticus, Spauligodon eremiasi, and Spauligodon occidentalis, but is easily separated by position of vulva, prebulbar in S. atlanticus and S. occidentalis , postbulbar in the new species, and location of lateral alae; in S. eremiasi, the lateral alae occur only in the fourth quarter of the body, whereas in the new species the lateral alae begin just posterior to lips.
  11. Elevational size variation and two new species of torrent frogs from Peninsular Malaysia (Anura: Ranidae: Amolops Cope)
    Onn CK, Abraham RK, Grismer JL, Grismer LL
    Zootaxa, 2018 Jun 15;4434(2):250-264.
    PMID: 30313185 DOI: 10.11646/zootaxa.4434.2.2
    Previously, only one species of torrent frog (Amolops larutensis) was thought to occur throughout Peninsular Malaysia. However, genomic work has demonstrated that populations from eastern Peninsular Malaysia form two separate lineages that are genetically distinct from A. larutensis that is now restricted to the western half of Peninsular Malaysia. This study demonstrates that all three lineages can be morphologically distinguished from each other, thereby providing additional support for the recognition of the eastern lineages as two distinct species. These lineages are described herein as Amolops gerutu sp. nov. from the eastern states of Kelantan, Terengganu, and Pahang, and A. australis sp. nov. from the southern-most state of Johor. In general, these two new species form a clade that is sister to A. larutensis and can be readily distinguished from it by having: (1) considerably denser and more pronounced dorsal tubercles, and (2) the posterodorsal surface of thighs having dense, dark stippling as opposed to broad vermiculations. Although differences in other morphometric characters were detected, their utility as diagnostic characters should be applied with caution due to the large intraspecific variation that overlaps among different species in many of the characters we measured. As such, we advocate for the use of tuberculation and pattern of the posterodorsal portion of the thighs as primary diagnostic characters. These characters can readily distinguish A. larutensis from the two new species. To differentiate A. australis sp. nov. from A. gerutu sp. nov. and A. larutensis, body size can be a good diagnostic character as A. australis sp. nov. is significantly smaller in both males (mean = 31.04 ± 1.59 mm) and females (mean = 46.48 ± 3.2 mm). Additionally, we show a strong positive correlation between body size and elevation, with populations from montane forests (>900 m asl) being considerably larger than populations at lower elevations.
  12. On the taxonomy of Lygosoma bampfyldei Bartlett, 1895 (Squamata: Scincidae) with descriptions of new species from Borneo and Peninsular Malaysia and the resurrection of Lygosoma schneideri Werner, 1900
    Grismer LL, Quah ESH, Duzulkafly Z, Yambun P
    Zootaxa, 2018 Jun 22;4438(3):528-550.
    PMID: 30313134 DOI: 10.11646/zootaxa.4438.3.6
    A reassessment of the taxonomy of Lygosoma bampfyldei based on morphology and color pattern indicates that it is a species complex containing L. bampfyldei Bartlett, 1895 from the Rajang River, Sarawak and Croker Range, Sabah in East Malaysia; L. peninsulare sp. nov. from Bukit Larut, Perak and 13.5 km east of Jeli, Kelantan, Peninsular Malaysia; L. kinabatanganensis sp. nov. from the Kinabatangan District, Deramakot camp (=Deramakot Sabah Forestry Department), Sabah, East Malaysia; and L. schneideri Werner, 1900 from Djapura, Indragiri, Sumatra, Indonesia-resurrected herein from the synonymy of L. bampfyldei. The new taxonomy aligns itself well with a growing body of literature demonstrating that semi-fossorial and fossorial Sundaic skinks are more diverse than previously considered.
  13. A new species of Sphenomorphus (Squamata: Scincidae) from Phu Quoc Island, Vietnam with a discussion of biogeography and character state evolution in the S. stellatus group
    Grismer LL, Nazarov RA, Bobrov VV, Poyarkov NA
    Zootaxa, 2020 Jun 19;4801(3):zootaxa.4801.3.3.
    PMID: 33056644 DOI: 10.11646/zootaxa.4801.3.3
    An integrative taxonomic analysis of the Sphenomorphus stellatus group recovered a newly discovered museum specimen from Phu Quoc Island, Kien Giang Province, Vietnam as a new species most closely related to S. preylangensis from Phnom Chi in central Cambodia, approximately 175 km to the northeast. Most notably, S. phuquocensis sp. nov. lacks the derived condition of having black dorsal stripes that diagnose S. annamiticus-the sister species to S. preylangensis plus S. phuquocensis sp. nov. A BioGeoBEARS analysis recovered the ancestor of the S. stellatus group to likely have ranged across forested regions on an exposed Sunda Shelf from southwestern Indochina to Peninsular Malaysia prior to diverging into northern and southern lineages separated by the Gulf of Thailand. Episodic fluctuations in sea levels and concomitant changes in the physiography of the Mekong Delta contributed to the fragmented distribution within and between species of the northern lineage. Sphenomorphus phuquocensis sp. nov. represents the second species of reptile endemic to Phu Quoc Island.
  14. On the taxonomic status of Asthenodipsas vertebralis (Boulenger, 1900) (Squamata: Pareidae) in Borneo with the description of a new species
    Quah ESH, Lim KKP, Grismer LL
    Zootaxa, 2021 Mar 24;4949(1):zootaxa.4949.1.2.
    PMID: 33756993 DOI: 10.11646/zootaxa.4949.1.2
    The taxonomic status of Asthenodipsas vertebralis in Borneo has been plagued with uncertainty over the last eighty years. An examination of museum collections resulted in the discovery of a voucher specimen of A. vertebralis from Sarawak, East Malaysia that confirms the presence of the species in Borneo and a previously unrecognised species, Asthenodipsas ingeri sp. nov. from Mount Kinabalu, Sabah. Asthenodipsas ingeri sp. nov. can be differentiated from its congeners by the combination of an absence of preoculars and suboculars, 1st and 3rd pair of infralabials in contact, two pairs of posterior inframaxillaries, supralabials 3-5 (sometimes 3 4) in contact with orbit, 15/15/15 rows of dorsal scales, presence of sharp vertebral keel, and divided subcaudals. This study highlights the importance of careful re-examination of museum collections that could potentially harbour new species hiding in plain sight. These discoveries also add to the growing number of reptile and amphibian species being described from Borneo that shows no signs of abating but are already potentially threatened by the continued deforestation and developments on the island.
  15. Two new karst-adapted species in the Cyrtodactyluspulchellus group (Reptilia, Gekkonidae) from southern Thailand
    Termprayoon K, Rujirawan A, Grismer LL, Wood PL, Aowphol A
    Zookeys, 2023;1179:313-352.
    PMID: 37745621 DOI: 10.3897/zookeys.1179.109712
    The exploration of unsurveyed areas in southern Thailand discovered two new karst-adapted species, Cyrtodactylussungaiupesp. nov. and Cyrtodactyluswangkhramensissp. nov., from Thung Wa and La-ngu Districts, Satun Province, respectively. These new species are members of the C.pulchellus group that occur along the Thai-Malay Peninsula. The new species can be distinguished from all other congeners by their key morphological characters and genetic divergence. Morphologically, Cyrtodactylussungaiupesp. nov. and Cyrtodactyluswangkhramensissp. nov. can be diagnosed from other members by having a combination of differences in body size; degree of dorsal tuberculation; absence of tubercles on ventral surfaces; number of ventral scales, paravertebral tubercles and femoroprecloacal pores in males only; deep precloacal groove only in males; absence of a scattered pattern of white dorsal tubercles; number of dark body bands; and the extent of caudal tubercles on an original tail. Although the two species are sister taxa and have nearly identical morphologies, they are considered to be different species, based on a relatively high uncorrected pairwise genetic divergence of the mitochondrial ND2 gene (6.59-6.89%), statistically significant univariate and multivariate morphological differences (PERMANOVA and ANOVA) and diagnostic characteristics of caudal tuberculation on the original tail. Moreover, Cyrtodactylussungaiupesp. nov. and Cyrtodactyluswangkhramensissp. nov. are currently restricted to their karstic type localities which may serve as a geographic barrier to dispersal and gene flow.
  16. Expanded morphological description of the Drogons False Garden Lizard, Pseudocalotes drogon (Squamata: Agamidae) from Peninsular Malaysia
    Hong Z, Anuar MSS, Grismer LL, Quah ESH
    Zootaxa, 2024 Feb 15;5410(4):519-532.
    PMID: 38480228 DOI: 10.11646/zootaxa.5410.4.3
    Species in the genus Pseudocalotes are generally rare and known only from a few specimens. Pseudocalotes drogon was described based on a single male from Frasers Hill, Pahang, Peninsular Malaysia. During a recent field survey at Frasers Hill, a female specimen was collected and identified as P. drogon based on morphological characters and a molecular phylogenetic analysis. The morphological description of P. drogon is expanded here, based on the male holotype and the newly collected female specimen.
  17. A New Species Belonging to the Cyrtodactylus sadleiri Complex (Squamata: Gekkonidae) Has Been Discovered in East Java, Indonesia
    Riyanto A, Sidik I, Hamidy A, Grismer LL, Abinawanto
    Zootaxa, 2025 Jan 16;5570(1):81-99.
    PMID: 40173765 DOI: 10.11646/zootaxa.5570.1.3
    We describe a new species of Cyrtodactylus Gray from East Java (Maospati and Mojokerto), Indonesia that belongs to the C. sadlieri complex within the C. darmandvillei species group. It is a medium sized (SVL) species with adult males reaching 67.2 mm and females 59.0 mm, dorsal tubercles absent on brachium, present on antebrachium and along the ventrolateral fold; 18-20 irregular dorsal tubercle rows at midbody; 26-28 paravertebral tubercles per series; 28-34 ventral scale rows across belly; precloacal groove present with 32-37 precloacofemoral pores in males; enlarged femoral and precloacal scales arranged in a continuous series; abrupt transition between the enlarged femorals and the adjacent scales on the posterior margin of the thigh; subequal median subcaudal scales not transversely enlarged. The new species is genetically divergent from the other Javan congeners of the C. darmandvillei groupwith genetic divergences (p-distances) ranging from 7.7-12.1% for the mitochondrial ND2 gene.
  18. Species delimitation with gene flow: A methodological comparison and population genomics approach to elucidate cryptic species boundaries in Malaysian Torrent Frogs
    Chan KO, Alexander AM, Grismer LL, Su YC, Grismer JL, Quah ESH, et al.
    Mol Ecol, 2017 Oct;26(20):5435-5450.
    PMID: 28802073 DOI: 10.1111/mec.14296
    Accurately delimiting species boundaries is a nontrivial undertaking that can have significant effects on downstream inferences. We compared the efficacy of commonly used species delimitation methods (SDMs) and a population genomics approach based on genomewide single-nucleotide polymorphisms (SNPs) to assess lineage separation in the Malaysian Torrent Frog Complex currently recognized as a single species (Amolops larutensis). First, we used morphological, mitochondrial DNA and genomewide SNPs to identify putative species boundaries by implementing noncoalescent and coalescent-based SDMs (mPTP, iBPP, BFD*). We then tested the validity of putative boundaries by estimating spatiotemporal gene flow (fastsimcoal2, ABBA-BABA) to assess the extent of genetic isolation among putative species. Our results show that the A. larutensis complex runs the gamut of the speciation continuum from highly divergent, genetically isolated lineages (mean Fst  = 0.9) to differentiating populations involving recent gene flow (mean Fst  = 0.05; Nm  > 5). As expected, SDMs were effective at delimiting divergent lineages in the absence of gene flow but overestimated species in the presence of marked population structure and gene flow. However, using a population genomics approach and the concept of species as separately evolving metapopulation lineages as the only necessary property of a species, we were able to objectively elucidate cryptic species boundaries in the presence of past and present gene flow. This study does not discount the utility of SDMs but highlights the danger of violating model assumptions and the importance of carefully considering methods that appropriately fit the diversification history of a particular system.
  19. Unrealized diversity in an urban rainforest: A new species of Lygosoma (Squamata: Scincidae) from western Sarawak, Malaysia (Borneo)
    Karin BR, Freitas ES, Shonleben S, Grismer LL, Bauer AM, Das I
    Zootaxa, 2018 Jan 12;4370(4):345-362.
    PMID: 29689833 DOI: 10.11646/zootaxa.4370.4.2
    We collected two specimens of an undescribed species of Lygosoma from pitfall traps in an urban rainforest in Kuching and from the base of a forested hill in western Sarawak, East Malaysia. The new species is diagnosable from all south-east Asian congeners by morphological characters, and most closely resembles Lygosoma herberti from the Thai-Malay Peninsula. The new species shows substantial molecular divergence from its closest relatives in two protein-coding genes, one mitochondrial (ND1) and one nuclear (R35) that we sequenced for several south-east Asian congeners. We describe the new species on the basis of this distinct morphology and genetic divergence. It is the third species of Lygosoma known from Borneo, and highlights the continuing rise in lizard species diversity on the island. In addition, the discovery of this species from a small urban rainforest underscores the importance of preserving intact rainforest areas of any size in maintaining species diversity.
  20. On the taxonomy and phylogeny of the rare Selangor Mud Snake (Raclitia indica) Gray (Serpentes, Homalopsidae) from Peninsular Malaysia
    Quah ESH, Wood PLJ, Grismer LL, Sah SAM
    Zootaxa, 2018 Nov 05;4514(1):53-64.
    PMID: 30485952 DOI: 10.11646/zootaxa.4514.1.4
    The taxonomic position of the rare Selangor Mud Snake (Raclitia indica) Gray to other species of homalopsids has remained uncertain due to the scarcity of specimens in collections and the lack of genetic material for comparison. Here we report the first molecular phylogenetic examination of this species based on recently acquired material. The study recovered R. indica nested within the clade of advanced, fanged homalopsids and the sister species to Erpeton tentaculatus Lácèpede. We also present notes on variation observed in the new specimens as well as range extensions for the species.
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