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Potential action of Rumex vesicarius (L.) against potassium dichromate and gentamicin induced nephrotoxicity in experimental rats

Subramaniyan V, Shaik S, Bag A, Manavalan G, Chandiran S

Pak J Pharm Sci, 2018 Mar;31(2):509-516.
PMID: 29618442

To determine the ameliorative potential of the active fraction from different extracts of Rumex vesicarius against potassium dichromate and gentamicin induced nephrotoxicity in experimental rats and its possible mechanism of action. Both sex wistar rats were divided into 6 groups (n=6/group) were fed with a control, potassium dichromate and gentamicin supplemented with different extracts at the doses of 200 and 400mg/kg respectively. Oral administration of EERV offered a significant (p<0.01 and p<0.001) dose dependent protection against PD and GN induced nephrotoxicity. Potassium dichromate and gentamicin nephrotoxicity assessed in terms of body weight, kidney weight, creatinine, urea, uric acid, BUN, albumin and total protein. Thus the present study revealed that EERV phytochemical constituents play an important role in protection against kidney damage.
Fulltext Fire risk assessments and fire protection measures for wind turbines: A review

You F, Shaik S, Rokonuzzaman M, Rahman KS, Tan WS

Heliyon, 2023 Sep;9(9):e19664.
PMID: 37809655 DOI: 10.1016/j.heliyon.2023.e19664

Wind turbine fires pose a significant global problem, leading to substantial financial losses. However, due to limited open discussions and lax regulations in the wind power industry, progress in addressing this issue has been hindered. This study aims to shed light on the fire risks associated with wind turbine nacelles and blades, while also exploring preventive measures and the latest fire detection and extinguishing technologies. The research conducted in this study involves a comprehensive investigation of various case studies, utilizing causal examination to identify common failure forms and their roles in fire incidents. Additionally, typical hazards, with a focus on fire incidents, in wind turbines are diagnosed. The primary causes of these fires were determined to be lightning strikes and hydraulic faults, often exacerbated by the presence of combustible materials. To conclude, the study includes a survey that encompasses education, knowledge analysis, and real-life accident experiences to assess fire risks and prevention measures in wind turbines. The participation of experts from wind farms, including those from the People's Republic of Bangladesh and other countries, adds valuable insights. The findings from this study serve as a crucial resource for enhancing safety standards and mitigating fire incidents within the wind power industry.
Fulltext Genome sequencing and analysis of Salmonella enterica serovar Typhi strain CR0063 representing a carrier individual during an outbreak of typhoid fever in Kelantan, Malaysia

Baddam R, Kumar N, Shaik S, Suma T, Ngoi ST, Thong KL, et al.

Gut Pathog, 2012;4(1):20.
PMID: 23234298 DOI: 10.1186/1757-4749-4-20

Salmonella Typhi is a human restricted pathogen with a significant number of individuals as asymptomatic carriers of the bacterium. Salmonella infection can be effectively controlled if a reliable method for identification of these carriers is developed. In this context, the availability of whole genomes of carrier strains through high- throughput sequencing and further downstream analysis by comparative genomics approaches is very promising. Herein we describe the genome sequence of a Salmonella Typhi isolate representing an asymptomatic carrier individual during a prolonged outbreak of typhoid fever in Kelantan, Malaysia. Putative genomic coordinates relevant in pathogenesis and persistence of this carrier strain are identified and discussed.
Fulltext Genome anatomy of the gastrointestinal pathogen, Vibrio parahaemolyticus of crustacean origin

Tiruvayipati S, Bhassu S, Kumar N, Baddam R, Shaik S, Gurindapalli AK, et al.

Gut Pathog, 2013 Dec 11;5(1):37.
PMID: 24330647 DOI: 10.1186/1757-4749-5-37

Vibrio parahaemolyticus, an important human pathogen, is associated with gastroenteritis and transmitted through partially cooked seafood. It has become a major concern in the production and trade of marine food products. The prevalence of potentially virulent and pathogenic V. parahaemolyticus in raw seafood is of public health significance. Here we describe the genome sequence of a V. parahaemolyticus isolate of crustacean origin which was cultured from prawns in 2008 in Selangor, Malaysia (isolate PCV08-7). The next generation sequencing and analysis revealed that the genome of isolate PCV08-7 has closest similarity to that of V. parahaemolyticus RIMD2210633. However, there are certain unique features of the PCV08-7 genome such as the absence of TDH-related hemolysin (TRH), and the presence of HU-alpha insertion. The genome of isolate PCV08-7 encodes a thermostable direct hemolysin (TDH), an important virulence factor that classifies PCV08-7 isolate to be a serovariant of O3:K6 strain. Apart from these, we observed that there is certain pattern of genetic rearrangements that makes V. parahaemolyticus PCV08-7 a non-pandemic clone. We present detailed genome statistics and important genetic features of this bacterium and discuss how its survival, adaptation and virulence in marine and terrestrial hosts can be understood through the genomic blueprint and that the availability of genome sequence entailing this important Malaysian isolate would likely enhance our understanding of the epidemiology, evolution and transmission of foodborne Vibrios in Malaysia and elsewhere.
Fulltext Comparative Evaluation of Different Numerical Pain Scales Used for Pain Estimation during Debonding of Orthodontic Brackets

Karobari MI, Assiry AA, Mirza MB, Sayed FR, Shaik S, Marya A, et al.

Int J Dent, 2021;2021:6625126.
PMID: 33747083 DOI: 10.1155/2021/6625126

Introduction: Patients experience various levels of discomfort during orthodontic treatment, i.e., after placement of separators, orthodontic implant placement, and archwire placement and during debonding. Various pain control methods have been developed to relive pain during debonding, i.e., finger pressure (FP), elastomeric wafer (EW), and stress relief (SR).
Aim: To analyse various pain scales commonly used to determine the effect of different pain control methods during debonding of orthodontic brackets. Study Design. A comparative cross-sectional study performed on a sample of 60 patients (n = 60) including 14 males and 46 females who were ready for debonding and who were divided into three groups, i.e., finger pressure (FP), elastomeric wafer (EW), and stress relief (SR).
Materials and Methods: A 100 mm Visual Analog Scale (VAS) was used to record the pain intensity for each tooth. Another scale known as Pain Catastrophizing Scale (PCS) was used to evaluate the patient's general attitude towards pain perception. The armamentarium and operator were kept same for all the patients. Statistical analysis used was the Kruskal-Wallis test, used for intergroup and intragroup comparison of pain scores.
Results: Lowest total pain score was recorded in the FP group (P=0.043) on intergroup comparison, while on intragroup comparison, higher pain scores were recorded in lower anterior region (P=0.02) in all three groups. There was no significant difference between the pain scores reported by the male and female subjects.
Conclusion: FP is an effective method of pain control. And teeth in the anterior region of lower and upper arches are more sensitive to pain. In terms of cognitive-affective constructs, although the VAS has been widely used in previous studies, the PCS has been detailed to show the most reliable association with physical discomfort and emotional distress.
Fulltext Heat Transfer Characteristics of Fullerene and Titania Nanotube Nanofluids under Agitated Quench Conditions

Dennis Quadros J, Khan SA, T P, Iqbal Mogul Y, R H, Abbas M, et al.

ACS Omega, 2022 Dec 27;7(51):47764-47783.
PMID: 36591137 DOI: 10.1021/acsomega.2c05397

Distilled water and aqueous fullerene nanofluids having concentrations of 0.02, 0.2, and 0.4 vol % and titania (titanium dioxide, TiO2) nanofluids of 0.0002, 0.002, and 0.02 vol % were analyzed for heat transfer characteristics. Quenching mediums were stirred at impeller speeds of 0, 500, 1,000, and 1,500 RPMs in a typical Tensi agitation system. During the quenching process, a metal probe made of ISO 9950 Inconel was used to record the temperature history. The inverse heat conduction method was used to calculate the spatial and temporal heat flux. The nanofluid rewetting properties were measured and matched to those of distilled water. The maximum mean heat flux was 3.26 MW/m2, and the quickest heat extraction was 0.2 vol % fullerene nanofluid, according to the results of the heat transfer investigation.
Fulltext 4E analysis of a two-stage refrigeration system through surrogate models based on response surface methods and hybrid grey wolf optimizer

Ahmed R, Mahadzir S, Mota-Babiloni A, Al-Amin M, Usmani AY, Ashraf Rana Z, et al.

PLoS One, 2023;18(2):e0272160.
PMID: 36735732 DOI: 10.1371/journal.pone.0272160

Refrigeration systems are complex, non-linear, multi-modal, and multi-dimensional. However, traditional methods are based on a trial and error process to optimize these systems, and a global optimum operating point cannot be guaranteed. Therefore, this work aims to study a two-stage vapor compression refrigeration system (VCRS) through a novel and robust hybrid multi-objective grey wolf optimizer (HMOGWO) algorithm. The system is modeled using response surface methods (RSM) to investigate the impacts of design variables on the set responses. Firstly, the interaction between the system components and their cycle behavior is analyzed by building four surrogate models using RSM. The model fit statistics indicate that they are statistically significant and agree with the design data. Three conflicting scenarios in bi-objective optimization are built focusing on the overall system following the Technique for Order of Preference by Similarity to Ideal Solution (TOPSIS) and Linear Programming Technique for Multidimensional Analysis of Preference (LINMAP) decision-making methods. The optimal solutions indicate that for the first to third scenarios, the exergetic efficiency (EE) and capital expenditure (CAPEX) are optimized by 33.4% and 7.5%, and the EE and operational expenditure (OPEX) are improved by 27.4% and 19.0%. The EE and global warming potential (GWP) are also optimized by 27.2% and 19.1%, where the proposed HMOGWO outperforms the MOGWO and NSGA-II. Finally, the K-means clustering technique is applied for Pareto characterization. Based on the research outcomes, the combined RSM and HMOGWO techniques have proved an excellent solution to simulate and optimize two-stage VCRS.
Fulltext Comparative genomic analysis of Helicobacter pylori from Malaysia identifies three distinct lineages suggestive of differential evolution

Kumar N, Mariappan V, Baddam R, Lankapalli AK, Shaik S, Goh KL, et al.

Nucleic Acids Res, 2015 Jan;43(1):324-35.
PMID: 25452339 DOI: 10.1093/nar/gku1271

The discordant prevalence of Helicobacter pylori and its related diseases, for a long time, fostered certain enigmatic situations observed in the countries of the southern world. Variation in H. pylori infection rates and disease outcomes among different populations in multi-ethnic Malaysia provides a unique opportunity to understand dynamics of host-pathogen interaction and genome evolution. In this study, we extensively analyzed and compared genomes of 27 Malaysian H. pylori isolates and identified three major phylogeographic lineages: hspEastAsia, hpEurope and hpSouthIndia. The analysis of the virulence genes within the core genome, however, revealed a comparable pathogenic potential of the strains. In addition, we identified four genes limited to strains of East-Asian lineage. Our analyses identified a few strain-specific genes encoding restriction modification systems and outlined 311 core genes possibly under differential evolutionary constraints, among the strains representing different ethnic groups. The cagA and vacA genes also showed variations in accordance with the host genetic background of the strains. Moreover, restriction modification genes were found to be significantly enriched in East-Asian strains. An understanding of these variations in the genome content would provide significant insights into various adaptive and host modulation strategies harnessed by H. pylori to effectively persist in a host-specific manner.