Browse publications by year: 2017

  1. Varadan P, Ganesh A, Konindala R, Nagendrababu V, Ashok R, Deivanayagam K
    Cureus, 2017 Oct 26;9(10):e1805.
    PMID: 29308333 DOI: 10.7759/cureus.1805
    Introduction Root canal irrigants play an important role in reducing intracanal microorganisms, which in turn helps in achieving a successful outcome for the root canal treatment. Objective To compare the antibacterial efficacy of alexidine and chlorhexidine against Enterococcus faecalis. Methods A total of 50 extracted single-rooted teeth were randomly divided into five groups after being infected with Enterococcus faecalis. The groups were based on irrigants used: Group I - 0.4% alexidine; Group II - 1% alexidine; Group III - 1.5% percent alexidine; Group IV - 2% alexidine; Group V - 2% chlorhexidine. Following irrigation, colony-forming units were determined from the dentinal shavings collected at 400 µm depth. Results Use of 2% alexidine reduced the bacteria effectively when compared to 0.4%, 1%, and 1.5% alexidine. A statistically significant difference was not observed between 2% alexidine and 2% chlorhexidine. Discussion Alexidine, due to its higher virulence factors for bacteria and better bacterial penetrability at 400 µm depth of dentin showed better eradication of Enterococcus faecalis in comparison to chlorhexidine. Conclusion The use of 2% alexidine against Enterococcus faecalis at 400 µm depth of dentin has efficacy comparable to chlorhexidine. Hence, alexidine can be used as an alternative irrigant for chlorhexidine during endodontic procedures.
    MeSH terms: Anti-Bacterial Agents; Biguanides; Chlorhexidine; Dental Pulp Cavity; Dentin; Root Canal Irrigants; Root Canal Therapy; Stem Cells; Enterococcus faecalis; Virulence Factors
  2. Chew-Ean T, Othman K, Alexander SM, Shatriah I
    Cureus, 2017 Nov 02;9(11):e1814.
    PMID: 29308342 DOI: 10.7759/cureus.1814
    Hearing loss is rarely associated with sympathetic ophthalmia. We describe a young man who presented with sympathetic ophthalmia and concurrent hearing loss one month post globe rupture. The presentation was very subtle and atypical. However, the patient recovered fully after two weeks of prompt oral corticosteroid therapy which resulted in good visual and hearing outcomes. This patient demonstrated that the acute phase of sympathetic ophthalmia is reversible with early recognition of features, timely diagnosis, and rapid initiation of corticosteroid therapy.
    MeSH terms: Adrenal Cortex Hormones; Deafness; Hearing; Hearing Tests; Humans; Male; Ophthalmia, Sympathetic; Hearing Loss
  3. Namasemayam D, Nallusamy M
    Med J Malaysia, 2017 12;72(6):329-332.
    PMID: 29308768 MyJurnal
    INTRODUCTION: Biliary atresia implies high risk of mortality if not diagnosed and treated early. We undertook this study to assess the prognostic factors affecting the outcome of Kasai surgery.

    METHODS: A retrospective clinical study was conducted among 58 patients from Hospital Sultanah Bahiyah Alor Setar. Data were analysed with logistic regression analysis using SPSS. Factors studied included age during surgery, bile duct diameter at the porta hepatic, race of patient, preoperative total bilirubin level and cholangitis. These factors were analysed to determine its significance as a prognostic factor affecting the outcome of Kasai surgery.

    RESULTS: Older age group above 56 days of life, bile duct diameter at porta hepatis measuring <50μm, pre-operative total bilirubin >10mg% and cholangitis were found to be poor prognostic factors from univariate regression analysis. Variables having p value<0.025 were analysed using the multivariable regression analysis. Only age of patient and diameter of bile duct at the porta hepatis were eligible for this analysis. The final analysis showed that age 57 days of life and above (adjusted odd's ratio (aOR) = 9.412, p value = 0.042, 95% confidence interval (95%CI) = 1.079 to 82.104) and bile duct diameter <50μm (aOR = 13.812, p value = 0.016, 95%CI = 1.616 to 118.042) were significant factors affecting the outcome.

    CONCLUSION: In conclusion, age of patient 56 days of life and younger and diameter of bile duct at porta hepatis ≥50μm gave a significantly better outcome after Kasai surgery.

    MeSH terms: Biliary Atresia/physiopathology*; Humans; Malaysia; Portoenterostomy, Hepatic*; Retrospective Studies; Logistic Models; Outcome Assessment (Health Care); Bile Ducts, Extrahepatic/surgery*
  4. Roslani AC, Ramakrishnan R, Azmi S
    Med J Malaysia, 2017 12;72(6):333-337.
    PMID: 29308769 MyJurnal
    BACKGROUND: Faecal incontinence (FI) is not a common presenting complaint in Malaysia, and little has been published on this topic. Since it is a treatable condition, a greater understanding of factors contributing to healthseeking behaviour is needed in order to plan effective provision of services.

    METHODS: A survey of 1000 patients and accompanying relatives, visiting general surgical and obstetrics and gynaecology clinics for matters unrelated to FI, was conducted at University Malaya Medical Centre between January 2009 and February 2010. A follow-up regression analysis of the 83 patients who had FI, to identify factors associated with health-seeking behaviour, was performed. Variables identified through univariate analysis were subjected to multivariate analysis to determine independence. Reasons for not seeking treatment were also analysed.

    RESULTS: Only eight patients (9.6%) had sought medical treatment. On univariate analysis, the likelihood of seeking treatment was significantly higher among patients who had more severe symptoms (OR 30.0, p=0.002), had incontinence to liquid stool (OR 3.83, p=0.002) or when there was an alteration to lifestyle (OR: 17.34; p<0.001). Nevertheless, the only independently-associated variable was alteration in lifestyle. Common reasons given for not seeking treatment was that the condition did not affect patients' daily activities (88.0%), "social taboo" (5.3%) and "other" reasons (6.7%).

    CONCLUSIONS: Lifestyle alteration is the main driver of healthseeking behaviour in FI. However, the majority do not seek treatment. Greater public and physician-awareness on FI and available treatment options is needed.

    MeSH terms: Academic Medical Centers*; Help-Seeking Behavior*; Adolescent; Adult; Fecal Incontinence*; Female; Humans; Malaysia; Male; Middle Aged; Regression Analysis; Health Care Surveys; Young Adult
  5. Pan Y, Chieng CY, Haris AAH, Ang SY
    Med J Malaysia, 2017 12;72(6):338-344.
    PMID: 29308770 MyJurnal
    OBJECTIVES: Colorectal cancer (CRC) is one of the most common gastrointestinal cancers in the world. In the Asia- Pacific region, it is the fastest emerging gastrointestinal cancer. Level of awareness on CRC warning signs and risk factors in the rural population of Malaysia is reported of very low. The aim of this study was to assess the level of knowledge of CRC among the public at medical outpatient clinics in Serdang Hospital. The association between sociodemographic factors with level of knowledge among the respondents was further studied.

    STUDY DESIGN: A study was conducted among the non-CRC patients' relatives accompanying their relatives to the medical outpatient clinics in Serdang Hospital from 1st April to 31st August 2016. The study was carried out with cluster sampling method.

    METHODS: The respondents were assessed using validated and modified Cancer Awareness Measures (CAM) questionnaire consists of three parts which are knowledge on warning signs, knowledge on risk factors and sociodemographic factors. All data were analysed using IBM SPSS Statistics 21.0.

    RESULTS: Altogether 308 subjects completed the questionnaires. It was shown high percentage of good knowledge for warning signs and risk factors of CRC among the respondents. A significant association between age groups and level of income with level of knowledge on warning signs was observed.

    CONCLUSIONS: The level of knowledge of CRC among the general public in Serdang Hospital was sufficient. The respondents with higher income or younger age had higher level of knowledge regarding CRC.

    MeSH terms: Adolescent; Adult; Ambulatory Care Facilities*; Cross-Sectional Studies; Female; Health Surveys; Humans; Health Knowledge, Attitudes, Practice; Malaysia; Male; Middle Aged; Risk Factors; Rural Population*; Early Detection of Cancer; Young Adult
  6. Latha S, Choon SE, Tey KE, Chee YN
    Med J Malaysia, 2017 12;72(6):345-349.
    PMID: 29308771 MyJurnal
    BACKGROUND: Cutaneous vasculitis is common, yet the risk factors for its chronicity have not been established.

    OBJECTIVE: To describe the clinical spectrum and identify risk factors for chronicity of cutaneous vasculitis.

    METHODS: Retrospective data analysis of 275 patients diagnosed with cutaneous vasculitis from January 2008 to December 2013.

    RESULTS: The mean age was 33.7 (±17.89) years, with female predominance. The majority of patients were Malays (67.3%). Skin biopsy was performed in 110 (40%) patients. The commonest sign was palpable purpura (30.6%). The aetiology remained elusive in 51.3% of patients. Common identifiable causes include infection (19.7%) and connective tissue disease (10.2%). Extracutaneous features were noted in 46.5% of patients. Erythrocyte sedimentation rate and antinuclear antibody were raised in 124 of 170 and 27 of 175 patients with documented results respectively. Cutaneous vasculitis was the presenting symptom in seven patients with newly diagnosed systemic lupus erythematosus. Anti Streptolysin O Titre was positive in 82 of 156 patients with documented results. Despite antibiotics, 31.7% of them had chronic lesions. Prednisolone alone was used in 20% of patients while 16.4% needed steroid-sparing agents. Most patients who needed systemic therapy (62%) had unidentifiable aetiology. Among the 155 patients who remained under follow up, 36.4% had chronic disease, one patient succumbed due to septicaemia, and the rest fully recovered within three months. The presence of ulcerative lesion was significantly associated with developing chronic vasculitis (p=0.003).

    CONCLUSION: The clinical spectrum of cutaneous vasculitis in our population was similar to other studies. Ulcerative lesion predicts a chronic outcome.

    MeSH terms: Adult; Dermatology*; Female; Humans; Malaysia; Male; Medical Audit; Middle Aged; Prognosis; Retrospective Studies; Vasculitis/diagnosis*; Vasculitis/drug therapy; Vasculitis/etiology; Vasculitis/physiopathology*; Young Adult
  7. Arma N, Rosnah I, Noor Hassim I
    Med J Malaysia, 2017 12;72(6):350-355.
    PMID: 29308772 MyJurnal
    BACKGROUND: The General Practice Physical Activity Questionnaire (GPPAQ) is a validated and reliable screening tool to measure the level of physical activity in adults. However, it has never been translated and validated in Malaysian population. This study aimed to translate the GPPAQ into Malay language and to evaluate the psychometric properties of the Malay-translated GPPAQ among shipyard workers.

    METHODS: The original English version of GPPAQ was translated forward and backward into Malay version by experts. The final version of the Malay-translated GPPAQ was then tested for validity and reliability. A cross-sectional study design was performed and systematic random sampling was used to select respondents. Construct validity and internal consistency of the Malay-translated version were tested using exploratory factor analysis and Cronbach's alpha respectively.

    RESULTS: Sixty-two male shipyard workers participated in this study. The GPPAQ showed good factor loading values for all items (0.608-0.834). The exploratory principal component factor analysis delineates all seven items into two factors with variance of 41.65%. The Cronbach's alpha value was good with 0.81, 0.84 and 0.76 for total scale, factor 1 and factor 2 respectively.

    CONCLUSION: The Malay-translated version of GPPAQ has high psychometric properties. Therefore, it is a valid instrument to assess physical activity among Malaysian working population, particularly in male shipyard workers.

    MeSH terms: Adult; Cross-Sectional Studies; Humans; Malaysia; Male; Middle Aged; Psychometrics; Surveys and Questionnaires*; Exercise*; Young Adult; General Practice*
  8. Ng HR, Goh CH, Ngim YS, Juliana J
    Med J Malaysia, 2017 12;72(6):356-359.
    PMID: 29308773 MyJurnal
    PURPOSE: To evaluate postoperative visual acuity, refractive status and rotational stability of toric intraocular lens (IOL) in correcting pre-existing corneal astigmatism.

    METHODS: A total of 69 patients with topographic corneal astigmatism of 1.0 Diopter (D) and above who underwent cataract surgery between June 2015 and December 2016 were included in this retrospective observational study. All preoperative toric IOL calculations were performed using immersion biometry. Appropriate formula to calculate toric IOL power was applied (SRK/T, Holladay 1 or Hoffer Q formula). All patients undergone similar uncomplicated phacoemulsification with implantation of AcrySoft IQ SN6AT toric IOL of different powers. Visual outcome, refractive status and axis of lens were evaluated at six weeks postoperatively. Ethical approval from the Ministry of Health Medical Research Ethics Committee was obtained prior to commencement of study.

    RESULTS: The mean refractive astigmatism decreased from 1.69 D ±1.10 (SD) to 0.81 D ± 0.40 (SD) at six weeks postoperatively. The mean postoperative spherical equivalent was at -0.37 D ±0.64 (SD). Mean LogMAR for uncorrected and corrected distance visual acuity in six weeks postoperative patients was at 0.29 ±0.16 (SD) and 0.12 ±0.12 (SD) respectively. Intraoperative to 6 weeks of postoperative comparison of IOL axis alignment showed low levels of rotation (mean 3.21 ±2.52 degrees).

    CONCLUSION: Cataract surgery with implantation of toric IOL was stable and effective in improving pre-existing regular corneal astigmatism.

    MeSH terms: Adult; Aged; Aged, 80 and over; Astigmatism; Female; Humans; Male; Middle Aged; Retrospective Studies; Visual Acuity; Outcome Assessment (Health Care)*; Lens Implantation, Intraocular*
  9. Yap SH, Ng YP, Roslan A, Kolanthaivelu J, Koh KW, P'ng HS, et al.
    Med J Malaysia, 2017 12;72(6):360-364.
    PMID: 29308774 MyJurnal
    INTRODUCTION: Atrial fibrillation (AF) is the most common cardiac arrhythmia with significant morbidity and mortality in relation to thromboembolic stroke. Our study aimed to evaluate the safety and efficacy of dabigatran in stroke prevention in elderly patient with nonvalvular AF with regard to the risk of ischemic stroke and intracranial haemorrhage (ICH) in real-world setting.

    METHODS: A retrospective cohort study of 200 patients on dabigatran and warfarin from January 2009 till September 2016 was carried out. Data were collected for 100 patients on dabigatran and 100 patients on warfarin.

    RESULTS: The mean follow-up period was 340.7±322.3 days for dabigatran group and 410.5±321.2 days for warfarin group. The mean time in therapeutic range (TTR) was 52±18.7%. The mean CHA2DS2 -VASc score for dabigatran group was 4.4±1.1 while 5.0±1.5 for warfarin group. None in dabigatran group experienced ischemic stroke compared to one patient in warfarin group (p=0.316). There was one patient in dabigatran group suffered from ICH compared to none in warfarin group (p=0.316). Four patients in warfarin group experienced minor bleeding, while none from dabigatran group (p=0.043).

    CONCLUSION: Overall bleeding events were significantly lower in dabigatran group compared to warfarin group. In the presence of suboptimal TTR rates and inconveniences with warfarin therapy, non-vitamin-K antagonist oral anticoagulants (NOAC) are the preferred agents for stroke prevention in elderly Asian patients for nonvalvular AF.

    MeSH terms: Dabigatran/therapeutic use*; Aged; Aged, 80 and over; Anticoagulants/therapeutic use; Antithrombins/therapeutic use*; Female; Humans; Malaysia; Male; Medical Audit; Retrospective Studies; Warfarin/therapeutic use*; Cohort Studies; Stroke/prevention & control*
  10. Lee MH, Khoo PJ, Gew LT, Ng CF
    Med J Malaysia, 2017 12;72(6):365-366.
    PMID: 29308775 MyJurnal
    We report the case of a 23-year-old woman who presented with prolonged menstruation and multiple bruises on the limbs and trunk. Investigations revealed severe thrombocytopenia and deranged coagulation profile with markedly prolonged activated partial thromboplastin time (aPTT). Lupus anticoagulant, anti-cardiolipin antibody and anti-beta-2-glycoprotein 1 antibody were positive. She was diagnosed with Immune Thrombocytopenic Purpura (ITP) with positive antiphospholipid antibody serology and given a course of intravenous methylprednisolone and tapering doses of oral prednisolone. She was steroid free and had no bleeding or thrombotic event over two years follow up.
    MeSH terms: Anti-Inflammatory Agents/administration & dosage; Female; Humans; Methylprednisolone/administration & dosage; Partial Thromboplastin Time; Purpura, Thrombocytopenic, Idiopathic/drug therapy*; Treatment Outcome; Young Adult
  11. Ooi SY, Lee SW
    Med J Malaysia, 2017 12;72(6):367-369.
    PMID: 29308776 MyJurnal
    Pneumonia is primarily a disease that is usually managed medically with antibiotics. However, in rare cases it may progress to necrotising pneumonia, which is an uncommon but severe complication of bacterial pneumonia. This case illustrates a typical case of necrotising pneumonia complicated with parenchymal and pleural complication such as empyema, pneumothorax with possible bronchopleural fistula. Early consultation with thoracic surgeon can be life-saving.
    MeSH terms: Anti-Bacterial Agents/administration & dosage; Humans; Male; Middle Aged; Fatal Outcome; Pneumonia, Necrotizing/drug therapy*; Pneumonia, Necrotizing/physiopathology*; Pneumonia, Necrotizing/diagnostic imaging
  12. Mohana RT, Zainal AA
    Med J Malaysia, 2017 12;72(6):370-371.
    PMID: 29308777 MyJurnal
    Intestinal knot formation was first described by Riverius in 16th century and later by Rokitansky in 1836. We report a very rare cause of small bowel gangrene caused by appendiceal knotting on to the ileum in a previously healthy mid aged lady. Patient underwent laparatomy and right hemicolectomy and primary anastomosis. The intra operative findings were the appendix was twisting (knotting) the small bowel about 40cm from the terminal ileum and causing gangrene to the segment of small bowel. Appendicitis is a common condition and management is usually straightforward. However we must be aware of rare complications which may arise that require a change from the standard treatment of acute appendicitis.
    MeSH terms: Acute Disease; Adult; Appendicitis/complications*; Appendix/physiopathology*; Female; Gangrene/etiology*; Humans; Intestine, Small/physiopathology*; Intestine, Small/surgery*; Laparotomy; Treatment Outcome
  13. Tan YL, Wee TC
    Med J Malaysia, 2017 12;72(6):372-373.
    PMID: 29308778
    We report a rare case of adult human metapneumovirus (HMPV) in a healthy 32-year-old man. There was dramatic deterioration in his condition developing pneumonia with Type-I respiratory failure and encephalitis. He needed mechanical ventilation in the intensive care setting and was treated with intravenous ribavirin. Post-extubation he remained severely physically and cognitively impaired despite rehabilitation. Treatment of HMPV pneumonia is at present, still without specific antiviral therapy. Managing HMPV-encephalitis remained supportive and challenging. More definite treatment strategies are needed.
    MeSH terms: Adult; Encephalitis/drug therapy*; Encephalitis/etiology; Humans; Male; Respiratory Insufficiency/etiology; Treatment Outcome; Paramyxoviridae Infections/complications; Paramyxoviridae Infections/drug therapy*; Paramyxoviridae Infections/rehabilitation; Metapneumovirus/drug effects*
  14. Shirley L, Thundyil RJ
    Med J Malaysia, 2017 12;72(6):374-375.
    PMID: 29308779 MyJurnal
    Intestinal pseudo-obstruction (IpsO) is defined as presence of clinical features of intestinal obstruction without identifiable mechanical obstructive lesion. IpsO is an uncommon gastrointestinal manifestation of systemic lupus erythematosus (SLE) and is largely under-recognised. There are only over 30 published cases in English literature on SLE-related IpsO. Herein, we report two cases of SLE-related IpsO to illustrate the importance of early recognition to avoid unnecessary surgical intervention, as SLE-related IpsO responds well to systemic high dose corticosteroids. These two cases also demonstrate the apparent association of IpsO with uretero-hydronephrosis, suggesting that the possible mechanism could be smooth muscle dysmotility.
    MeSH terms: Adrenal Cortex Hormones/therapeutic use; Adult; Female; Humans; Intestinal Pseudo-Obstruction/diagnosis*; Intestinal Pseudo-Obstruction/drug therapy; Intestinal Pseudo-Obstruction/etiology*; Lupus Erythematosus, Systemic/complications*; Lupus Erythematosus, Systemic/physiopathology*; Treatment Outcome; Young Adult
  15. Yew YC, Nurul-Fatin FS, Norazita AT
    Med J Malaysia, 2017 12;72(6):376-377.
    PMID: 29308780 MyJurnal
    Panuveitis secondary to masquerade syndrome is uncommon. A middle-aged woman presented to the ophthalmology clinic with panuveitis associated with anaemia, joint pain, and renal impairment. An incidental finding of a lytic lesion over her left scapula following a chest x-ray prompted further skeletal survey and revealed further lytic lesions over the skull and pelvic bone. Bone marrow aspiration was performed and this confirmed the diagnosis of multiple myeloma. Her left eye vision and intraocular inflammation improved after commencement of chemotherapy. A detailed history is important to elucidate the aetiology of masquerade syndrome and to prevent any delayed diagnosis of underlying malignancy.
    MeSH terms: Adult; Diagnosis, Differential; Diagnostic Errors/prevention & control; Female; Humans; Malaysia; Multiple Myeloma/diagnosis*; Multiple Myeloma/drug therapy; Panuveitis/physiopathology*; Treatment Outcome
  16. Leong CL, Norazah A, Azureen A, Lingam R
    Med J Malaysia, 2017 12;72(6):378-379.
    PMID: 29308781
    A 61-year-old male presented with community-onset pneumonia not responding to treatment despite given appropriate antibiotics. Computed tomography scan of the thorax showed large multiloculated pleural effusion with multiple cavitating foci within collapsed segments; lesions which were suggestive of necrotising pneumonia. Drainage of the effusion and culture revealed methicillin-resistant Staphylococcus aureus, which had the same antibiotic profile with the blood isolate and PVL gene positive.
    MeSH terms: Bacterial Toxins/adverse effects*; Bacterial Toxins/biosynthesis*; Exotoxins/adverse effects*; Exotoxins/biosynthesis*; Humans; Leukocidins/adverse effects*; Leukocidins/biosynthesis*; Male; Middle Aged; Treatment Outcome; Community-Acquired Infections*; Methicillin-Resistant Staphylococcus aureus/metabolism*; Pneumonia, Necrotizing/drug therapy*; Pneumonia, Necrotizing/etiology*; Pneumonia, Necrotizing/diagnostic imaging
  17. Tan LN, Mariappa G, Voon HY, Suharjono H
    Med J Malaysia, 2017 12;72(6):380-381.
    PMID: 29308782 MyJurnal
    Severe sepsis with multi-organ failure is associated with a high mortality rate. This case report highlights the challenges and modalities available in the management of a lady with refractory shock and disseminated intravascular coagulation (DIC) due to toxic shock syndrome (TSS) from genital tract sepsis. Early surgical intervention to remove the source of infection, the use of recombinant activated factor VII to treat intractable disseminated intravascular coagulation and intravenous immunoglobulin to neutralise the circulating exotoxins, have been employed and shown to drastically improve outcomes.
    MeSH terms: Abortion, Septic/etiology*; Adult; Disseminated Intravascular Coagulation/drug therapy*; Female; Humans; Hysterectomy; Postoperative Complications; Pregnancy; Recombinant Proteins/administration & dosage; Shock, Septic; Factor VIIa/administration & dosage*; Immunoglobulins, Intravenous/administration & dosage*
  18. Tinia Idaty, Mohd Ghazi
    MyJurnal
    Renewable energy projects in many developing countries need financial and legal back up from
    governments and other supportive bodies. There is a viable alternative to finite energy via usage of
    biomass waste a renewable energy source. The electrical energy production analysis on biomass waste
    presented in this paper is based on the experimental analysis carried out using the laboratory and pilot
    scale bioreactors. Electrical energy generated with oscillatory flow bioreactor (OFBR) was 10.12 kWh or
    up to 91% higher than the 10 L lab scale bioreactor (0.9 kWh), demonstrating that the novel OFBR has a
    great potential for renewable electricity. Also, the pilot scale plant achieves a value of 12.3 kWh, which
    the difference is not quite significant with that of OFBR. These results illustrate that the generation of
    the renewable electricity is feasible especially with the OFBR thereby achieving high methane potential
    during the treatment of manure and food waste. Nevertheless, energy recoveries should be enhanced to
    improve the entire operational performance.
  19. Loo JSE, Emtage AL, Ng KW, Yong ASJ, Doughty SW
    J Mol Graph Model, 2017 Dec 29;80:38-47.
    PMID: 29306746 DOI: 10.1016/j.jmgm.2017.12.017
    GPCR crystal structures have become more readily accessible in recent years. However, homology models of GPCRs continue to play an important role as many GPCR structures remain unsolved. The new crystal structures now available provide not only additional templates for homology modelling but also the opportunity to assess the performance of homology models against their respective crystal structures and gain insight into the performance of such models. In this study we have constructed homology models from templates of various transmembrane sequence identities for eight GPCR targets to better understand the relationship between transmembrane sequence identity and model quality. Model quality was assessed relative to the crystal structure in terms of structural accuracy as well as performance in two typical structure-based drug design applications: ligand binding pose prediction and docking enrichment in virtual screening. Crystal structures significantly outperformed homology models in both assessments. Accurate ligand binding pose prediction was possible but difficult to achieve using homology models, even with the use of induced fit docking. In virtual screening using homology models still conferred significant enrichment compared to random selection, with a clear benefit also observed in using models optimized through induced fit docking. Our results indicate that while homology models that are reasonably accurate structurally can be constructed, without significant refinement homology models will be outperformed by crystal structures in ligand binding pose prediction and docking enrichment regardless of the template used, primarily due to the extremely high level of structural accuracy needed for such applications.
    MeSH terms: Ligands; Models, Chemical; Drug Design; Molecular Dynamics Simulation
  20. Chua CS, Huang SY, Cheng CW, Bai CH, Hsu CY, Chiu HW, et al.
    Medicine (Baltimore), 2017 Dec;96(49):e9094.
    PMID: 29245334 DOI: 10.1097/MD.0000000000009094
    Abdominal pain is one of the key symptoms of irritable bowel syndrome (IBS). Studies have indicated an increase in the incidence of IBS in Asia. However, yet the pathophysiology of this disease remains unknown. Women are more likely to develop the condition than men, especially the constipation-predominant type. Essential fatty acid (EFA) malnutrition is one of several theories discussing the mechanism of IBS.The authors hypothesized that significant EFA deficiency may cause abdominal pain in patients with IBS. However, because patterns in the oral intake of EFAs differ between cultures, the authors narrowed this study to examine the nutritional status of Asian female patients with IBSThe authors investigated Asian female patients with IBS and compared them with a group of healthy controls. Thirty patients with IBS and 39 healthy individuals were included in this study. The participants' age, height, weight, and waist size were recorded. The 24-item Hamilton Depression Rating Scale was documented. Both erythrocyte and plasma fatty acid content were analyzed through gas-liquid chromatography.The authors found that patients with IBS exhibited significantly higher scores for depression, higher proportions of plasma saturated fatty acids and monounsaturated fatty acids, and lower proportions of docosahexaenoic acid and total omega-3 polyunsaturated fatty acids in plasma are associated with IBS in Asian female patients. Further study is indicated to confirm the causality of this association.
    MeSH terms: Adult; Body Weights and Measures; Depression/epidemiology*; Erythrocytes/metabolism; Fatty Acids/blood*; Fatty Acids, Essential; Fatty Acids, Monounsaturated/blood; Fatty Acids, Unsaturated/blood; Female; Humans; Middle Aged; Fatty Acids, Omega-3/blood; Abdominal Pain/blood; Irritable Bowel Syndrome/blood*; Irritable Bowel Syndrome/epidemiology*; Asian Continental Ancestry Group; Young Adult
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