Displaying publications 1 - 20 of 29 in total

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  1. Hashim S, Alajerami YS, Ramli AT, Ghoshal SK, Saleh MA, Abdul Kadir AB, et al.
    Appl Radiat Isot, 2014 Sep;91:126-30.
    PMID: 24929526 DOI: 10.1016/j.apradiso.2014.05.023
    Lithium potassium borate (LKB) glasses co-doped with TiO2 and MgO were prepared using the melt quenching technique. The glasses were cut into transparent chips and exposed to gamma rays of (60)Co to study their thermoluminescence (TL) properties. The TL glow curve of the Ti-doped material featured a single prominent peak at 230 °C. Additional incorporation of MgO as a co-activator enhanced the TL intensity threefold. LKB:Ti,Mg is a low-Z material (Z(eff)=8.89) with slow signal fading. Its radiation sensitivity is 12 times lower that the sensitivity of TLD-100. The dose response is linear at doses up to 10(3) Gy. The trap parameters, such as the kinetics order, activation energy, and frequency factor, which are related to the glow peak, were determined using TolAnal software.
  2. Piersson AD, Ibrahim B, Suppiah S, Mohamad M, Hassan HA, Omar NF, et al.
    PLoS One, 2021;16(9):e0252883.
    PMID: 34547018 DOI: 10.1371/journal.pone.0252883
    BACKGROUND: Alzheimer's disease (AD) is a major neurocognitive disorder identified by memory loss and a significant cognitive decline based on previous level of performance in one or more cognitive domains that interferes in the independence of everyday activities. The accuracy of imaging helps to identify the neuropathological features that differentiate AD from its common precursor, mild cognitive impairment (MCI). Identification of early signs will aid in risk stratification of disease and ensures proper management is instituted to reduce the morbidity and mortality associated with AD. Magnetic resonance imaging (MRI) using structural MRI (sMRI), functional MRI (fMRI), diffusion tensor imaging (DTI), and magnetic resonance spectroscopy (1H-MRS) performed alone is inadequate. Thus, the combination of multiparametric MRI is proposed to increase the accuracy of diagnosing MCI and AD when compared to elderly healthy controls.

    METHODS: This protocol describes a non-interventional case control study. The AD and MCI patients and the healthy elderly controls will undergo multi-parametric MRI. The protocol consists of sMRI, fMRI, DTI, and single-voxel proton MRS sequences. An eco-planar imaging (EPI) will be used to perform resting-state fMRI sequence. The structural images will be analysed using Computational Anatomy Toolbox-12, functional images will be analysed using Statistical Parametric Mapping-12, DPABI (Data Processing & Analysis for Brain Imaging), and Conn software, while DTI and 1H-MRS will be analysed using the FSL (FMRIB's Software Library) and Tarquin respectively. Correlation of the MRI results and the data acquired from the APOE genotyping, neuropsychological evaluations (i.e. Montreal Cognitive Assessment [MoCA], and Mini-Mental State Examination [MMSE] scores) will be performed. The imaging results will also be correlated with the sociodemographic factors. The diagnosis of AD and MCI will be standardized and based on the DSM-5 criteria and the neuropsychological scores.

    DISCUSSION: The combination of sMRI, fMRI, DTI, and MRS sequences can provide information on the anatomical and functional changes in the brain such as regional grey matter volume atrophy, impaired functional connectivity among brain regions, and decreased metabolite levels specifically at the posterior cingulate cortex/precuneus. The combination of multiparametric MRI sequences can be used to stratify the management of MCI and AD patients. Accurate imaging can decide on the frequency of follow-up at memory clinics and select classifiers for machine learning that may aid in the disease identification and prognostication. Reliable and consistent quantification, using standardised protocols, are crucial to establish an optimal diagnostic capability in the early detection of Alzheimer's disease.

  3. Hashim S, Ibrahim SA, Che Omar SS, Alajerami YS, Saripan MI, Noor NM, et al.
    Appl Radiat Isot, 2014 Aug;90:258-60.
    PMID: 24858954 DOI: 10.1016/j.apradiso.2014.04.016
    Radiation effects of photon irradiation in pure Photonic Crystal Fibres (PCF) and Flat fibres (FF) are still much less investigated in thermoluminescense dosimetry (TLD). We have reported the TL response of PCF and FF subjected to 6 MV photon irradiation. The proposed dosimeter shows good linearity at doses ranging from 1 to 4 Gy. The small size of these detectors points to its use as a dosimeter at megavoltage energies, where better tissue-equivalence and the Bragg-Gray cavity theory prevails.
  4. Wen D, Cheng Z, Li J, Zheng X, Yao W, Dong X, et al.
    J Neurosci Methods, 2021 Nov 01;363:109353.
    PMID: 34492241 DOI: 10.1016/j.jneumeth.2021.109353
    BACKGROUND: The application of deep learning models to electroencephalogram (EEG) signal classification has recently become a popular research topic. Several deep learning models have been proposed to classify EEG signals in patients with various neurological diseases. However, no effective deep learning model for event-related potential (ERP) signal classification is yet available for amnestic mild cognitive impairment (aMCI) with type 2 diabetes mellitus (T2DM).

    METHOD: This study proposed a single-scale multi-input convolutional neural network (SSMICNN) method to classify ERP signals between aMCI patients with T2DM and the control group. Firstly, the 18-electrode ERP signal on alpha, beta, and theta frequency bands was extracted by using the fast Fourier transform, and then the mean, sum of squares, and absolute value feature of each frequency band were calculated. Finally, these three features are converted into multispectral images respectively and used as the input of the SSMICNN network to realize the classification task.

    RESULTS: The results show that the SSMICNN can fuse MSI formed by different features, SSMICNN enriches the feature quantity of the neural network input layer and has excellent robustness, and the errors of SSMICNN can be simultaneously transmitted to the three convolution channels in the back-propagation phase. Comparison with Existing Method(s): SSMICNN could more effectively identify ERP signals from aMCI with T2DM from the control group compared to existing classification methods, including convolution neural network, support vector machine, and logistic regression.

    CONCLUSIONS: The combination of SSMICNN and MSI can be used as an effective biological marker to distinguish aMCI patients with T2DM from the control group.

  5. Wen D, Li R, Jiang M, Li J, Liu Y, Dong X, et al.
    Neural Netw, 2021 Dec 25;148:23-36.
    PMID: 35051867 DOI: 10.1016/j.neunet.2021.12.010
    This study aims to explore an effective method to evaluate spatial cognitive ability, which can effectively extract and classify the feature of EEG signals collected from subjects participating in the virtual reality (VR) environment; and evaluate the training effect objectively and quantitatively to ensure the objectivity and accuracy of spatial cognition evaluation, according to the classification results. Therefore, a multi-dimensional conditional mutual information (MCMI) method is proposed, which could calculate the coupling strength of two channels considering the influence of other channels. The coupled characteristics of the multi-frequency combination were transformed into multi-spectral images, and the image data were classified employing the convolutional neural networks (CNN) model. The experimental results showed that the multi-spectral image transform features based on MCMI are better in classification than other methods, and among the classification results of six band combinations, the best classification accuracy of Beta1-Beta2-Gamma combination is 98.3%. The MCMI characteristics on the Beta1-Beta2-Gamma band combination can be a biological marker for the evaluation of spatial cognition. The proposed feature extraction method based on MCMI provides a new perspective for spatial cognitive ability assessment and analysis.
  6. Alajerami YS, Hashim S, Ramli AT, Saleh MA, Saripan MI, Alzimami K, et al.
    Appl Radiat Isot, 2013 Aug;78:21-5.
    PMID: 23644162 DOI: 10.1016/j.apradiso.2013.03.095
    New glasses Li2CO3-K2CO3-H3BO3 (LKB) co-doped with CuO and MgO, or with TiO2 and MgO, were synthesized by the chemical quenching technique. The thermoluminescence (TL) responses of LKB:Cu,Mg and LKB:Ti,Mg irradiated with 6 MV photons or 6 MeV electrons were compared in the dose range 0.5-4.0 Gy. The standard commercial dosimeter LiF:Mg,Ti (TLD-100) was used to calibrate the TL reader and as a reference in comparison of the TL properties of the new materials. The dependence of the responses of the new materials on (60)Co dose is linear in the range of 1-1000 Gy. The TL yields of both of the co-doped glasses and TLD-100 are greater for electron irradiation than for photon irradiation. The TL sensitivity of LKB:Ti,Mg is 1.3 times higher than the sensitivity of LKB:Cu,Mg and 12 times less than the sensitivity of TLD-100. The new TL dosimetric materials have low effective atomic numbers, good linearity of the dose responses, excellent signal reproducibility, and a simple glow curve structure. This combination of properties makes them suitable for radiation dosimetry.
  7. Al-Asadi HA, Al-Mansoori MH, Hitam S, Saripan MI, Mahdi MA
    Opt Express, 2011 Jan 31;19(3):1842-53.
    PMID: 21368999 DOI: 10.1364/OE.19.001842
    We implement a particle swarm optimization (PSO) algorithm to characterize stimulated Brillouin scattering phenomena in optical fibers. The explicit and strong dependence of the threshold exponential gain on the numerical aperture, the pump laser wavelength and the optical loss coefficient are presented. The proposed PSO model is also evaluated with the localized, nonfluctuating source model and the distributed (non-localized) fluctuating source model. Using our model, for fiber lengths from 1 km to 29 km, the calculated threshold exponential gain of stimulated Brillouin scattering is gradually decreased from 17.4 to 14.6 respectively. The theoretical results of Brillouin threshold power predicted by the proposed PSO model show a good agreement with the experimental results for different fiber lengths from 1 km to 12 km.
  8. Al-Asadi HA, Al-Mansoori MH, Ajiya M, Hitam S, Saripan MI, Mahdi MA
    Opt Express, 2010 Oct 11;18(21):22339-47.
    PMID: 20941134 DOI: 10.1364/OE.18.022339
    We develop a theoretical model that can be used to predict stimulated Brillouin scattering (SBS) threshold in optical fibers that arises through the effect of Brillouin pump recycling technique. Obtained simulation results from our model are in close agreement with our experimental results. The developed model utilizes single mode optical fiber of different lengths as the Brillouin gain media. For 5-km long single mode fiber, the calculated threshold power for SBS is about 16 mW for conventional technique. This value is reduced to about 8 mW when the residual Brillouin pump is recycled at the end of the fiber. The decrement of SBS threshold is due to longer interaction lengths between Brillouin pump and Stokes wave.
  9. Hambali NA, Mahdi MA, Al-Mansoori MH, Abas AF, Saripan MI
    Opt Express, 2009 Jul 06;17(14):11768-75.
    PMID: 19582091
    We have investigated the characteristics of Brillouin-Erbium fiber laser (BEFL) with variation of Erbium-doped fiber amplifier (EDFA) locations in a ring cavity configuration. Three possible locations of the EDFA in the laser cavity have been studied. The experimental results show that the location of EDFA plays vital role in determining the output power and the tuning range. Besides the Erbium gain, Brillouin gain also contributes to the performance of the BEFL. By placing the EDFA next to the Brillouin gain medium (dispersion compensating fiber), the Brillouin pump signal is amplified thereby generating higher intensities of Brillouin Stokes line. This efficient process suppresses the free running self-lasing cavity modes from oscillating in cavity as a result of higher Stokes laser power and thus provide a wider tuning range. At the injected Brillouin pump power of 1.6 mW and the maximum 1480 nm pump power of 135 mW, the maximum Stokes laser power of 25.1 mW was measured and a tuning range of 50 nm without any self-lasing cavity modes was obtained.
  10. Hambali NA, Mahdi MA, Al-Mansoori MH, Saripan MI, Abas AF
    Appl Opt, 2009 Sep 20;48(27):5055-60.
    PMID: 19767918 DOI: 10.1364/AO.48.005055
    The operation of a single-wavelength Brillouin-erbium fiber laser (BEFL) system with a Brillouin pump preamplified technique for different output coupling ratios in a ring cavity is experimentally demonstrated. The characteristics of Brillouin Stokes power and tunability were investigated in this research. The efficiency of the BEFL operation was obtained at an optimum output coupling ratio of 95%. By fixing the Brillouin pump wavelength at 1550 nm while its power was set at 1.6 mW and the 1480 pump power was set to its maximum value of 135 mW, the Brillioun Stokes power was found to be 28.7 mW. The Stokes signal can be tuned within a range of 60 nm from 1520 to 1580 nm without appearances of the self-lasing cavity modes in the laser system.
  11. Jalalian A, Mashohor SB, Mahmud HR, Saripan MI, Ramli AR, Karasfi B
    Clin Imaging, 2013 May-Jun;37(3):420-6.
    PMID: 23153689 DOI: 10.1016/j.clinimag.2012.09.024
    Breast cancer is the most common form of cancer among women worldwide. Early detection of breast cancer can increase treatment options and patients' survivability. Mammography is the gold standard for breast imaging and cancer detection. However, due to some limitations of this modality such as low sensitivity especially in dense breasts, other modalities like ultrasound and magnetic resonance imaging are often suggested to achieve additional information. Recently, computer-aided detection or diagnosis (CAD) systems have been developed to help radiologists in order to increase diagnosis accuracy. Generally, a CAD system consists of four stages: (a) preprocessing, (b) segmentation of regions of interest, (c) feature extraction and selection, and finally (d) classification. This paper presents the approaches which are applied to develop CAD systems on mammography and ultrasound images. The performance evaluation metrics of CAD systems are also reviewed.
  12. Abdulhussain SH, Ramli AR, Saripan MI, Mahmmod BM, Al-Haddad SAR, Jassim WA
    Entropy (Basel), 2018 Mar 23;20(4).
    PMID: 33265305 DOI: 10.3390/e20040214
    The recent increase in the number of videos available in cyberspace is due to the availability of multimedia devices, highly developed communication technologies, and low-cost storage devices. These videos are simply stored in databases through text annotation. Content-based video browsing and retrieval are inefficient due to the method used to store videos in databases. Video databases are large in size and contain voluminous information, and these characteristics emphasize the need for automated video structure analyses. Shot boundary detection (SBD) is considered a substantial process of video browsing and retrieval. SBD aims to detect transition and their boundaries between consecutive shots; hence, shots with rich information are used in the content-based video indexing and retrieval. This paper presents a review of an extensive set for SBD approaches and their development. The advantages and disadvantages of each approach are comprehensively explored. The developed algorithms are discussed, and challenges and recommendations are presented.
  13. Dong X, Xu S, Liu Y, Wang A, Saripan MI, Li L, et al.
    Cancer Imaging, 2020 Aug 01;20(1):53.
    PMID: 32738913 DOI: 10.1186/s40644-020-00331-0
    BACKGROUND: Convolutional neural networks (CNNs) have been extensively applied to two-dimensional (2D) medical image segmentation, yielding excellent performance. However, their application to three-dimensional (3D) nodule segmentation remains a challenge.

    METHODS: In this study, we propose a multi-view secondary input residual (MV-SIR) convolutional neural network model for 3D lung nodule segmentation using the Lung Image Database Consortium and Image Database Resource Initiative (LIDC-IDRI) dataset of chest computed tomography (CT) images. Lung nodule cubes are prepared from the sample CT images. Further, from the axial, coronal, and sagittal perspectives, multi-view patches are generated with randomly selected voxels in the lung nodule cubes as centers. Our model consists of six submodels, which enable learning of 3D lung nodules sliced into three views of features; each submodel extracts voxel heterogeneity and shape heterogeneity features. We convert the segmentation of 3D lung nodules into voxel classification by inputting the multi-view patches into the model and determine whether the voxel points belong to the nodule. The structure of the secondary input residual submodel comprises a residual block followed by a secondary input module. We integrate the six submodels to classify whether voxel points belong to nodules, and then reconstruct the segmentation image.

    RESULTS: The results of tests conducted using our model and comparison with other existing CNN models indicate that the MV-SIR model achieves excellent results in the 3D segmentation of pulmonary nodules, with a Dice coefficient of 0.926 and an average surface distance of 0.072.

    CONCLUSION: our MV-SIR model can accurately perform 3D segmentation of lung nodules with the same segmentation accuracy as the U-net model.

  14. Safri LS, Lip HTC, Saripan MI, Huei TJ, Krishna K, Md Idris MA, et al.
    Prim Care Diabetes, 2020 08;14(4):364-369.
    PMID: 31744790 DOI: 10.1016/j.pcd.2019.10.001
    AIMS: To evaluate the incidence and risk factors for carotid artery stenosis amongst asymptomatic type 2 diabetes from a single Malaysian tertiary institution.

    METHODS: This is a prospective cross-sectional study of asymptomatic type 2 diabetics selected from the outpatient ophthalmology and endocrine clinics for carotid duplex ultrasound scanning performed by a single radiologist. The duplex ultrasound criteria were based on the North American Symptomatic Carotid Endarterectomy Trial (NASCET) classification of carotid artery stenosis. Univariate and multivariate analysis was performed to identify possible risk factors of carotid artery stenosis.

    RESULTS: Amongst the 200 patients, the majority were males (56%) and Malay predominance (58.5%). There were 12/200 patients (6%) with mean age of 69.2 years identified to have carotid artery stenosis. Univariate analysis of patients with asymptomatic carotid artery stenosis identified older age of 69.2 years (p=0.027) and duration of exposure to diabetes of 17.9 years (p=0.024) as significant risk factors.

    CONCLUSION: Patients with longer exposure of diabetes and older age were risk factors of carotid artery stenosis in asymptomatic type 2 diabetics. These patients should be considered for selective screening of carotid artery stenosis during primary care visit for early identification and closer surveillance for stroke prevention.

  15. Haniff NSM, Abdul Karim MK, Osman NH, Saripan MI, Che Isa IN, Ibahim MJ
    Diagnostics (Basel), 2021 Aug 30;11(9).
    PMID: 34573915 DOI: 10.3390/diagnostics11091573
    Hepatocellular carcinoma (HCC) is considered as a complex liver disease and ranked as the eighth-highest mortality rate with a prevalence of 2.4% in Malaysia. Magnetic resonance imaging (MRI) has been acknowledged for its advantages, a gold technique for diagnosing HCC, and yet the false-negative diagnosis from the examinations is inevitable. In this study, 30 MR images from patients diagnosed with HCC is used to evaluate the robustness of semi-automatic segmentation using the flood fill algorithm for quantitative features extraction. The relevant features were extracted from the segmented MR images of HCC. Four types of features extraction were used for this study, which are tumour intensity, shape feature, textural feature and wavelet feature. A total of 662 radiomic features were extracted from manual and semi-automatic segmentation and compared using intra-class relation coefficient (ICC). Radiomic features extracted using semi-automatic segmentation utilized flood filling algorithm from 3D-slicer had significantly higher reproducibility (average ICC = 0.952 ± 0.009, p < 0.05) compared with features extracted from manual segmentation (average ICC = 0.897 ± 0.011, p > 0.05). Moreover, features extracted from semi-automatic segmentation were more robust compared to manual segmentation. This study shows that semi-automatic segmentation from 3D-Slicer is a better alternative to the manual segmentation, as they can produce more robust and reproducible radiomic features.
  16. Radzi SFM, Karim MKA, Saripan MI, Rahman MAA, Isa INC, Ibahim MJ
    J Pers Med, 2021 Sep 29;11(10).
    PMID: 34683118 DOI: 10.3390/jpm11100978
    Automated machine learning (AutoML) has been recognized as a powerful tool to build a system that automates the design and optimizes the model selection machine learning (ML) pipelines. In this study, we present a tree-based pipeline optimization tool (TPOT) as a method for determining ML models with significant performance and less complex breast cancer diagnostic pipelines. Some features of pre-processors and ML models are defined as expression trees and optimal gene programming (GP) pipelines, a stochastic search system. Features of radiomics have been presented as a guide for the ML pipeline selection from the breast cancer data set based on TPOT. Breast cancer data were used in a comparative analysis of the TPOT-generated ML pipelines with the selected ML classifiers, optimized by a grid search approach. The principal component analysis (PCA) random forest (RF) classification was proven to be the most reliable pipeline with the lowest complexity. The TPOT model selection technique exceeded the performance of grid search (GS) optimization. The RF classifier showed an outstanding outcome amongst the models in combination with only two pre-processors, with a precision of 0.83. The grid search optimized for support vector machine (SVM) classifiers generated a difference of 12% in comparison, while the other two classifiers, naïve Bayes (NB) and artificial neural network-multilayer perceptron (ANN-MLP), generated a difference of almost 39%. The method's performance was based on sensitivity, specificity, accuracy, precision, and receiver operating curve (ROC) analysis.
  17. Ibrahim B, Suppiah S, Ibrahim N, Mohamad M, Hassan HA, Nasser NS, et al.
    Hum Brain Mapp, 2021 06 15;42(9):2941-2968.
    PMID: 33942449 DOI: 10.1002/hbm.25369
    Resting-state fMRI (rs-fMRI) detects functional connectivity (FC) abnormalities that occur in the brains of patients with Alzheimer's disease (AD) and mild cognitive impairment (MCI). FC of the default mode network (DMN) is commonly impaired in AD and MCI. We conducted a systematic review aimed at determining the diagnostic power of rs-fMRI to identify FC abnormalities in the DMN of patients with AD or MCI compared with healthy controls (HCs) using machine learning (ML) methods. Multimodal support vector machine (SVM) algorithm was the commonest form of ML method utilized. Multiple kernel approach can be utilized to aid in the classification by incorporating various discriminating features, such as FC graphs based on "nodes" and "edges" together with structural MRI-based regional cortical thickness and gray matter volume. Other multimodal features include neuropsychiatric testing scores, DTI features, and regional cerebral blood flow. Among AD patients, the posterior cingulate cortex (PCC)/Precuneus was noted to be a highly affected hub of the DMN that demonstrated overall reduced FC. Whereas reduced DMN FC between the PCC and anterior cingulate cortex (ACC) was observed in MCI patients. Evidence indicates that the nodes of the DMN can offer moderate to high diagnostic power to distinguish AD and MCI patients. Nevertheless, various concerns over the homogeneity of data based on patient selection, scanner effects, and the variable usage of classifiers and algorithms pose a challenge for ML-based image interpretation of rs-fMRI datasets to become a mainstream option for diagnosing AD and predicting the conversion of HC/MCI to AD.
  18. Waeleh N, Saripan MI, Musarudin M, Mashohor S, Ahmad Saad FF
    Appl Radiat Isot, 2021 Oct;176:109885.
    PMID: 34385090 DOI: 10.1016/j.apradiso.2021.109885
    The present study was conducted to determine quantitatively the correlation between injected radiotracer and signal-to-noise ratio (SNR) based on differences in physiques and stages of cancer. Eight different activities were evaluated with modelled National Electrical Manufacturers Association (NEMA) of the International Electrotechnical Commission (IEC) PET's phantom with nine different tumour-to-background ratio (TBR). The findings suggest that the optimal value of dosage is required for all categories of patients in the early stages of cancer diagnosis.
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