Displaying publications 121 - 140 of 1705 in total

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  1. Microsatellite based analysis of genetic diversity of popular black pepper genotypes in South India
    Joy N, Prasanth VP, Soniya EV
    Genetica, 2011 Aug;139(8):1033-43.
    PMID: 21874534 DOI: 10.1007/s10709-011-9605-x
    The genotypes of black pepper are morphologically and genotypically highly diverse and carry all the cumulative variations inherited and maintained through generations. The present study describes the Simple Sequence Repeat (SSR) or microsatellite based assessment of genetic diversity among forty popular genotypes and four different species of black pepper in Southern region of India. For isolation of SSR primers, our earlier attempts with enrichment strategies like 'Triplex affinity capture' did not extract a single SSR primer due to close proximity of restriction sites to the SSR motif. Hence we developed a 'Sequential Reverse Genome Walking (SRGW)' strategy with better enrichment efficiency of 72% that generated seven new SSR primers. Genotyping precisely discriminated majority of genotypes which indicated that the SSR primers are very informative. A total of 62 alleles with an average of 15.5 alleles over 4 loci were identified. All the SSR primers showed an average Polymorphism Information Content (PIC) value of 0.85. The estimated average Shared Allele Frequency ranged between 1.57 and 20.12%. The PCA plot revealed four closely related individual groups and identified Karimunda, Wild pepper and a local landrace 'local b' as the most divergent genotypes. Cluster analysis exposed the genetic relatedness between hybrids and selections with other known cultivars. The introduction of black pepper from South India to Malaysia was emphasized from the observation of genetic similarity of Malaysian cultivar 'Kuching' with other indigenous popular cultivars. The study was first to portray the precise genetic relatedness among the major indigenous genotypes of black pepper.
    Matched MeSH terms: Time Factors
  2. Fulltext An approach for removing redundant data from RFID data streams
    Mahdin H, Abawajy J
    Sensors (Basel), 2011;11(10):9863-77.
    PMID: 22163730 DOI: 10.3390/s111009863
    Radio frequency identification (RFID) systems are emerging as the primary object identification mechanism, especially in supply chain management. However, RFID naturally generates a large amount of duplicate readings. Removing these duplicates from the RFID data stream is paramount as it does not contribute new information to the system and wastes system resources. Existing approaches to deal with this problem cannot fulfill the real time demands to process the massive RFID data stream. We propose a data filtering approach that efficiently detects and removes duplicate readings from RFID data streams. Experimental results show that the proposed approach offers a significant improvement as compared to the existing approaches.
    Matched MeSH terms: Time Factors
  3. Identifying gait asymmetry using gyroscopes--a cross-correlation and Normalized Symmetry Index approach
    Gouwanda D, Senanayake SM
    J Biomech, 2011 Mar 15;44(5):972-8.
    PMID: 21306714 DOI: 10.1016/j.jbiomech.2010.12.013
    Injury to a lower limb may disrupt natural walking and cause asymmetrical gait, therefore assessing the gait asymmetry has become one of the important procedures in gait analysis. This paper proposes the use of wireless gyroscopes as a new instrument to determine gait asymmetry. It also introduces two novel approaches: normalized cross-correlations (Cc(norm)) and Normalized Symmetry Index (SI(norm)). Cc(norm) evaluates the waveform patterns generated by the lower limb in each gait cycle. SI(norm) provides indications on the timing and magnitude of the bilateral differences between the limbs while addressing the drawbacks of the conventional methods. One-way ANOVA test reveals that Cc(norm) can be considered as single value indicator that determines the gait asymmetry (p<0.01). The experiment results showed that SI(norm) in asymmetrical gait were different from normal gait. SI(norm) in asymmetrical gait were found to be approximately 20% greater than SI(norm) in normal gait during pre-swing and initial swing.
    Matched MeSH terms: Time Factors
  4. Enzymatic synthesis of palm olein-based fatty thiohydroxamic acids
    Al-Mulla EA, Yunus WM, Ibrahim NA, Rahman MZ
    J Oleo Sci, 2010;59(11):569-73.
    PMID: 20972356
    Fatty thiohydroxamic acids (FTAs) have been successfully synthesized from palm olein and thiohydroxamic acid by a one-step lipase catalyzed reaction. The use of immobilized lipase (Lipozyme RMIM) as the catalyst for the preparation reaction provides an easy isolation of the enzyme from the products and other components in the reaction mixture. The FTAs were characterized using Fourier transform infrared (FTIR) spectroscopy, proton nuclear magnetic resonance ((1)H NMR) technique and elemental analysis. The highest conversion percentage (95 %) was obtained when the process was carried out for 30 hours using urea to palm oil ratio of 6.0: 1.0 at 40 °C. The method employed offers several advantages such as renewable and abundant of the raw material, simple reaction procedure, environmentally friendly process and high yield of the product.
    Matched MeSH terms: Time Factors
  5. Optimization of pectin extraction from durian rind (Durio zibethinus) using response surface methodology
    Wai WW, Alkarkhi AF, Easa AM
    J Food Sci, 2009 Oct;74(8):C637-41.
    PMID: 19799660 DOI: 10.1111/j.1750-3841.2009.01331.x
    Response surface methodology (RSM) was carried out to study the effect of temperature, pH, and heating time as input variables on the yield and degree of esterification (DE) as the output (responses). The results showed that yield and DE of extracted pectin ranged from 2.27% to 9.35% (w/w, based on dry weight of durian rind) and 47.66% to 68.6%, respectively. The results also showed that a 2nd-order model adequately fitted the experimental data for the yield and DE. Optimum condition for maximum yield and DE was achieved at 85 degrees C, a time of either 4 or 1 h, and a pH of 2 or 2.5.
    Matched MeSH terms: Time Factors
  6. Circadian and solar clocks interact in seasonal flowering
    Yeang HY
    Bioessays, 2009 Nov;31(11):1211-8.
    PMID: 19795408 DOI: 10.1002/bies.200900078
    The plant maintains a 24-h circadian cycle that controls the sequential activation of many physiological and developmental functions. There is empirical evidence suggesting that two types of circadian rhythms exist. Some plant rhythms appear to be set by the light transition at dawn, and are calibrated to circadian (zeitgeber) time, which is measured from sunrise. Other rhythms are set by both dawn and dusk, and are calibrated to solar time that is measured from mid-day. Rhythms on circadian timing shift seasonally in tandem with the timing of dawn that occurs earlier in summer and later in winter. On the other hand, rhythms set to solar time are maintained independently of the season, the timing of noon being constant year-round. Various rhythms that run in-phase and out-of-phase with one another seasonally may provide a means to time and induce seasonal events such as flowering.
    Matched MeSH terms: Time Factors
  7. Kinetics of enzymatic synthesis of liquid wax ester from oleic acid and oleyl alcohol
    Radzi SM, Mohamad R, Basri M, Salleh AB, Ariff A, Rahman MB, et al.
    J Oleo Sci, 2010;59(3):127-34.
    PMID: 20124754
    The kinetics of wax ester synthesis from oleic acid and oleyl alcohol using immobilized lipase from Candida antartica as catalyst was studied with different types of impeller (Rushton turbine and AL-hydrofoil) to create different mixing conditions in 2l stirred tank reactor. The effects of catalyst concentration, reaction temperature, and impeller tip speed on the synthesis were also evaluated. Rushton turbine impeller exhibited highest conversion rate at lower impeller tip speed as compared to AL-hydrofoil impeller. A second-order reversible kinetic model from single progress curve for the prediction of fractional conversion at given reaction time was proposed and the corresponding kinetic parameter values were calculated by non-linear regression method. The results from the simulation using the proposed model showed satisfactory agreement with the experimental data. Activation energy shows a value of 21.77 Kcal/mol. The thermodynamic parameters of the process, enthalpy and entropy, were 21.15 Kcal/mol and 52.07 cal/mol.K, respectively.
    Matched MeSH terms: Time Factors
  8. Effects of washing pre-treatment on mercury concentration in fish tissue
    Hajeb P, Jinap S
    Food Addit Contam Part A Chem Anal Control Expo Risk Assess, 2009 Oct;26(10):1354-61.
    PMID: 19690999 DOI: 10.1080/02652030903150567
    The objective of this study was to examine the effect of washing pre-treatment on mercury concentration in fish fillet. Response surface methodology was used to investigate the influence of three variables, pH (1-6.5), NaCl (0-1% w/v) and exposure time (5-30 min) by using a three-factor central composite design. The aim was to obtain the best possible combination of these variables in order to reduce mercury in fish fillet. The experimental data were adequately fitted into a second-order polynomial model with multiple regression coefficients (R(2)) of 0.961. The results indicated that the reduction of mercury in fish flesh significantly depends on the pH of the solution used. The overall optimal condition resulting in the maximum mercury reduction in fish fillet was obtained at a combined level pH of 2.79, NaCl of 0.5% and exposure time of 13.5 min. The optimized protocol produced a solution that can reduce mercury from raw fish fillet up to 81%.
    Matched MeSH terms: Time Factors
  9. Transformation of nitrogen dioxide into ozone and prediction of ozone concentrations using multiple linear regression techniques
    Ghazali NA, Ramli NA, Yahaya AS, Yusof NF, Sansuddin N, Al Madhoun WA
    Environ Monit Assess, 2010 Jun;165(1-4):475-89.
    PMID: 19440846 DOI: 10.1007/s10661-009-0960-3
    Analysis and forecasting of air quality parameters are important topics of atmospheric and environmental research today due to the health impact caused by air pollution. This study examines transformation of nitrogen dioxide (NO(2)) into ozone (O(3)) at urban environment using time series plot. Data on the concentration of environmental pollutants and meteorological variables were employed to predict the concentration of O(3) in the atmosphere. Possibility of employing multiple linear regression models as a tool for prediction of O(3) concentration was tested. Results indicated that the presence of NO(2) and sunshine influence the concentration of O(3) in Malaysia. The influence of the previous hour ozone on the next hour concentrations was also demonstrated.
    Matched MeSH terms: Time Factors
  10. Enzymatic synthesis of fatty hydrazides from palm oils
    Mohamad S, Yunus WM, Haron MJ, Rahman MZ
    J Oleo Sci, 2008;57(5):263-7.
    PMID: 18391474
    Fatty hydrazides (FH) have been successfully synthesized from palm oils by a one-step lipase catalyzed reaction. The synthesis was carried out by treating the oils with hydrazine hydrate at neutral pH using an immobilized lipase, Lipozyme as the catalyst. The percentages of conversion of RBD (refined, bleached and deodorized) palm oil (PO), RBD palm olein (POn), RBD palm stearin (PS) and RBD palm kernel olein (PKOn) into their fatty hydrazides are 95, 97, 97 and 99, respectively.
    Matched MeSH terms: Time Factors
  11. Fulltext Land clearing and the biofuel carbon debt
    Fargione J, Hill J, Tilman D, Polasky S, Hawthorne P
    Science, 2008 Feb 29;319(5867):1235-8.
    PMID: 18258862 DOI: 10.1126/science.1152747
    Increasing energy use, climate change, and carbon dioxide (CO2) emissions from fossil fuels make switching to low-carbon fuels a high priority. Biofuels are a potential low-carbon energy source, but whether biofuels offer carbon savings depends on how they are produced. Converting rainforests, peatlands, savannas, or grasslands to produce food crop-based biofuels in Brazil, Southeast Asia, and the United States creates a "biofuel carbon debt" by releasing 17 to 420 times more CO2 than the annual greenhouse gas (GHG) reductions that these biofuels would provide by displacing fossil fuels. In contrast, biofuels made from waste biomass or from biomass grown on degraded and abandoned agricultural lands planted with perennials incur little or no carbon debt and can offer immediate and sustained GHG advantages.
    Matched MeSH terms: Time Factors
  12. Cell attachment study of chicken fibroblast cell (DF-1) using ceramic microcarrier granule in bioreactors
    Mel M, Sopyan I, Nor YA
    Med J Malaysia, 2008 Jul;63 Suppl A:18-20.
    PMID: 19024963
    Tricalcium phosphate ceramic microcarrier has been developed and introduced to a new possibility for the culture of anchorage dependent animal cells of DF1. It was observed that the number of attached cells was increased with shorter time for both spinner vessel and stirred tank (ST) bioreactor. For those bioreactors, the total viable cell number that had been obtained is about 1.2 x 10(5) cell/ml.
    Matched MeSH terms: Time Factors
  13. Leaf herbivory and decomposability in a Malaysian tropical rain forest
    Kurokawa H, Nakashizuka T
    Ecology, 2008 Sep;89(9):2645-56.
    PMID: 18831185
    There is accumulating evidence that similar suites of plant traits may affect leaf palatability and leaf litter decomposability. However, the possible association between leaf herbivory and litter decomposition rates across species in species-diverse natural ecosystems such as tropical rain forests remains unexplored, despite its importance in estimating the herbivory effects on carbon and nutrient cycling of ecosystems. We found no strong association between leaf herbivory and litter decomposition rates across 40 tree species in a Malaysian tropical rain forest, even though the leaf and litter traits were tightly correlated. This is because the leaf and litter traits related to herbivory and decomposition rates in the field were inconsistent. Leaf toughness accounted for only a small part of the variation in the herbivory rate, whereas a number of litter traits (the leaf mass per area, lignin to nitrogen ratio, and condensed tannin concentration) accurately predicted the decomposition rate across species. These results suggest that herbivory rate across species may not be strongly related to single leaf traits, probably because plant-herbivore interactions in tropical rain forests are highly diverse; on the other hand, plant-decomposer interactions are less specific and can be governed by litter chemicals. We also investigated two factors, phylogeny and tree functional types, that could affect the relationship between herbivory and decomposition across species. Phylogenetic relatedness among the species did not affect the relationship between herbivory and decomposition. In contrast, when the plants were segregated according to their leaf emergence pattern, we found a significant positive relationship between herbivory and decomposition rates for continuous-leafing species. In these species, the condensed tannin to N ratios in leaves and litter were related to herbivory and decomposition rates, respectively. However, we did not observe a similar trend for synchronous-leafing species. These results suggest that the relationship between herbivory and decomposition may be more greatly affected by functional types than by phylogenetic relatedness among species. In conclusion, our results suggest that well-defended leaves are not necessarily less decomposable litter in a tropical rain forest community, implying that herbivory may not generate positive feedback for carbon and nutrient cycling in this type of ecosystem.
    Matched MeSH terms: Time Factors
  14. Reproductive parameters over a 37-year period of free-ranging female Borneo orangutans at Sepilok Orangutan Rehabilitation Centre
    Kuze N, Sipangkui S, Malim TP, Bernard H, Ambu LN, Kohshima S
    Primates, 2008 Apr;49(2):126-34.
    PMID: 18297473 DOI: 10.1007/s10329-008-0080-7
    We analysed the reproductive parameters of free-ranging female orangutans at Sepilok Orangutan Rehabilitation Centre (SORC) on Borneo Island, Sabah, Malaysia. Fourteen adult females produced 28 offspring in total between 1967 and 2004. The average censored interbirth interval (IBI) (i.e. offspring was still alive when mother produced a next offspring) was 6 years. This was shorter than censored IBIs reported in the wild but similar to IBIs reported for those in captivity. The nonparametric survival analysis (Kaplan-Meier method) revealed a significantly shorter IBI at SORC compared with wild orangutans in Tanjung Putting. The infant (0-3 years) mortality rate at SORC of 57% was much higher than rates reported both in the wild and captivity. The birth sex-ratio was significantly biassed toward females: 24 of the 27 sex-identified infants were females. The average age at first reproduction was 11.6 years, which is younger than the age in the wild and in captivity. The high infant mortality rate might be caused by human rearing and increased transmission of disease due to frequent proximal encounters with conspecifics around the feeding platforms (FPs). This young age of first reproduction could be because of the uncertainty regarding estimated ages of the female orangutans at SORC. It may also be affected by association with other conspecifics around FPs, which increased the number of encounters of the females with males compared with the number of encounters that would take place in the wild. Provision of FPs, which improves the nutritional condition of the females, caused the shorter IBI. The female-biassed birth sex-ratio can be explained by the Trivers and Willard hypothesis. The female-biassed sex ratio could be caused by the mothers being in poor health, parasite prevalence and/or high social stress (but not food scarcity) due to the frequent encounters with conspecifics around FPs.
    Matched MeSH terms: Time Factors
  15. From forest landscape to agricultural landscape in the developing tropical country of Malaysia: pattern, process, and their significance on policy
    Abdullah SA, Hezri AA
    Environ Manage, 2008 Nov;42(5):907-17.
    PMID: 18626684 DOI: 10.1007/s00267-008-9178-3
    Agricultural expansion and deforestation are spatial processes of land transformation that impact on landscape pattern. In peninsular Malaysia, the conversion of forested areas into two major cash crops--rubber and oil palm plantations--has been identified as driving significant environmental change. To date, there has been insufficient literature studying the link between changes in landscape patterns and land-related development policies. Therefore, this paper examines: (i) the links between development policies and changes in land use/land cover and landscape pattern and (ii) the significance and implications of these links for future development policies. The objective is to generate insights on the changing process of land use/land cover and landscape pattern as a functional response to development policies and their consequences for environmental conditions. Over the last century, the development of cash crops has changed the country from one dominated by natural landscapes to one dominated by agricultural landscapes. But the last decade of the century saw urbanization beginning to impact significantly. This process aligned with the establishment of various development policies, from land development for agriculture between the mid 1950s and the 1970s to an emphasis on manufacturing from the 1980s onward. Based on a case study in Selangor, peninsular Malaysia, a model of landscape pattern change is presented. It contains three stages according to the relative importance of rubber (first stage: 1900--1950s), oil palm (second stage: 1960s--1970s), and urban (third stage: 1980s--1990s) development that influenced landscape fragmentation and heterogeneity. The environmental consequences of this change have been depicted through loss of biodiversity, geohazard incidences, and the spread of vector-borne diseases. The spatial ecological information can be useful to development policy formulation, allowing diagnosis of the country's "health" and sustainability. The final section outlines the usefulness of landscape analysis in the policy-making process to prevent further fragmentation of the landscape and forest loss in Malaysia in the face of rapid economic development.
    Matched MeSH terms: Time Factors
  16. Fulltext Therapy-based rehabilitation services for patients living at home more than one year after stroke
    Aziz NA, Leonardi-Bee J, Phillips M, Gladman JR, Legg L, Walker MF
    Cochrane Database Syst Rev, 2008 Apr 16.
    PMID: 18425928 DOI: 10.1002/14651858.CD005952.pub2
    BACKGROUND: Current practice of rehabilitation intervention mainly concentrates on the first six months of stroke. At present, there is no agreed consensus about the benefits of such a service more than one year after stroke.

    OBJECTIVES: To ascertain whether therapy-based rehabilitation services can influence outcome one year or more after stroke.

    SEARCH STRATEGY: We searched the trials registers of the following Cochrane Review Groups: Stroke Group (last searched September 2007), Effective Practice and Organisation of Care Group (last searched October 2006) and Dementia and Cognitive Improvement Group (last searched October 2006). We also searched the Cochrane Central Register of Controlled Trials (CENTRAL) (The Cochrane Library Issue 4, 2006), MEDLINE (1966 to October 2006), EMBASE (1980 to October 2006), CINAHL (1982 to October 2006), AMED (1985 to October 2006), PEDro (1952 to October 2006), British Nursing Index (1993 to October 2006), DARE (1994 to October 2006), HMIC (1979 to October 2006) and NHS EED (1991 to October 2006). We also searched dissertation databases and ongoing trials and research registers, scanned reference lists and contacted researchers and experts in the field.

    SELECTION CRITERIA: All randomised controlled trials of community-based stroke patients, in which at least 75% were recruited one year after stroke and received a therapy-based rehabilitation intervention that was compared with conventional care.

    DATA COLLECTION AND ANALYSIS: Two review authors independently selected trials and extracted data on a number of pre-specified outcomes. The primary outcomes were the proportion of participants who had deteriorated or were dependent in personal activities of daily living at the end of scheduled follow up.

    MAIN RESULTS: We identified five trials of 487 participants that were eligible for the review. Overall, there was inconclusive evidence as to whether therapy-based rehabilitation intervention one year after stroke was able to influence any relevant patient or carer outcome. Trials varied in design, type of interventions provided, quality, and outcomes assessed.

    AUTHORS' CONCLUSIONS: This review highlights the dearth of evidence investigating long-term therapy-based rehabilitation interventions for patients with stroke.

    Matched MeSH terms: Time Factors
  17. Delayed hanging death: a case report
    Kumar V
    J Pak Med Assoc, 2007 Jan;57(1):39-41.
    PMID: 17319420
    Matched MeSH terms: Time Factors
  18. Biosorption and bioreduction of Cr(VI) by locally isolated Cr-resistant bacteria
    Zakaria ZA, Aruleswaran N, Kaur S, Ahmad WA
    Water Sci Technol, 2007;56(8):117-23.
    PMID: 17978439
    Cr(VI) biosorption and bioreduction ability of locally isolated Cr-resistant bacteria was investigated using the shake-flask technique. A mixture of S. epidermidis and B. cereus showed the highest minimum inhibitory concentration (MIC) level at 750 mg/L Cr(VI) followed by S. aureus and Bacillus sp. of 250 mg/L, and A. haemolyticus of 70 mg/L. From the Langmuir adsorption isotherm, the treatment of cells with heat-acid resulted in the highest amount of Cr(VI) adsorped (78.25 mg/g dry wt. for S. epidermidis) compared to heat-acetone (67.93 mg/g dry wt. Bacillus sp.), heat only (36.05 mg/g dry wt. S. epidermidis) or untreated cells (45.40 mg/g dry wt. S. epidermidis and B. cereus). FTIR analysis showed the involvement of amine groups in Cr(VI) adsorption. In the bioreduction study, A. haemolyticus was able to completely reduce Cr(VI) up to 50 mg/L.
    Matched MeSH terms: Time Factors
  19. Acute and chronic effects of the insecticide-endosulfan on freshwater cladoceran, Moina macrocopa straus
    Chuah TS, Loh JY, Hii YS
    Bull Environ Contam Toxicol, 2007 Nov;79(5):557-61.
    PMID: 17639329
    Acute and chronic effects of insecticide-endosulfan on the survival and reproduction performance of Moina macrocopa were determined in a laboratory study. Endosulfan concentrations that cause 50% mortality (LC50) after exposure for 24 and 48 h were 3.34 and 0.16 mg L(-1), respectively. Average longevity, initial age of reproduction and intrinsic rate of natural increase were reduced at 0.002 mg L(-1). Fecundity was greatly reduced by about 70% at 0.0004 mg L(-1) and approximately 97% at 0.002 mg L(-1) as compared to control organisms throughout the whole life span of 15 days. If environmental concentration of endosulfan do not exceed 0.0004 mg L(-1), application of this insecticide is unlikely to induce detrimental effects on these cladoceran populations in agro-ecosystem.
    Matched MeSH terms: Time Factors
  20. Stormwater quality and pollution loading from an urban residential catchment in Johor, Malaysia
    Nazahiyah R, Yusop Z, Abustan I
    Water Sci Technol, 2007;56(7):1-9.
    PMID: 17951862
    Sampling of urban runoff was carried out in a small catchment, which represents a residential area (3.34 ha) in Skudai, Johor. One hundred and seventeen runoff samples from ten storm events were analysed. Runoff quality showed large variations in concentrations during storms, especially for SS, BOD5 and COD. Concentrations of NO3-N, NO2-N, NH3-N, and P were also high. Lead (Pb) was also detected but the levels were low (<0.001 mg/L). In general, the river quality is badly polluted and falls in Class V based on the Malaysian Interim National Water Quality Standards. Event mean concentrations for all parameters were found to vary greatly between storms. The values (mg/L) were BOD5 (72), COD (325), SS (386), NO3-N (2.5), NO2-N (0.58), NH3-N (6.8), P (3.4), respectively. First flush phenomena were observed for BOD, COD, SS, NO3-N, NH3-N and P. The first 20-30% of the runoff volume evacuated between 20-59% BOD, 15-69% COD, 15-78% SS, 14-49% NO3-N, 14-19% NO2-N, 23-53% NH3-N and 23-43% P.
    Matched MeSH terms: Time Factors
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