Browse publications by year: 2023

  1. Liu J, Chai Z, Wang H, Ivanov A, Kubelka V, Freckleton R, et al.
    iScience, 2023 Jun 16;26(6):106928.
    PMID: 37305692 DOI: 10.1016/j.isci.2023.106928
    Arctic environments are changing rapidly and if we are to understand the resilience of species to future changes, we need to investigate alterations in their life histories. Egg size and egg shape are key life-history traits, reflecting parental investment as well as influencing future reproductive success. Here we focus on egg characteristics in two Arctic shorebirds, the Dunlin (Calidris alpina) and the Temminck's stint (Calidris temminckii). Using egg photos that encompass their full breeding ranges, we show that egg characteristics exhibit significant longitudinal variations, and the variation in the monogamous species (Dunlin) is significantly greater than the polygamous species (Temminck's stint). Our finding is consistent with the recent "disperse-to-mate" hypothesis which asserts that polygamous species disperse further to find mates than monogamous species, and by doing so they create panmictic populations. Taken together, Arctic shorebirds offer excellent opportunities to understand evolutionary patterns in life history traits.
  2. Lazaro B, Sardi JP, Smith JS, Kelly MP, Yanik EL, Dial B, et al.
    J Neurosurg Spine, 2023 Mar 01;38(3):319-330.
    PMID: 36334285 DOI: 10.3171/2022.9.SPINE22549
    OBJECTIVE: Proximal junctional failure (PJF) is a severe form of proximal junctional kyphosis. Previous reports on PJF have been limited by heterogeneous cohorts and relatively short follow-ups. The authors' objectives herein were to identify risk factors for PJF and to assess its long-term incidence and revision rates in a homogeneous cohort.

    METHODS: The authors reviewed data from the Adult Symptomatic Lumbar Scoliosis 1 trial (ASLS-1), a National Institutes of Health-sponsored prospective multicenter study. Inclusion criteria were an age ≥ 40 years, ASLS (Cobb angle ≥ 30° and Oswestry Disability Index [ODI] ≥ 20 or Scoliosis Research Society revised 22-item questionnaire [SRS-22r] score ≤ 4.0 in pain, function, or self-image domains), and primary thoracolumbar fusion/fixation to the sacrum/pelvis of ≥ 7 levels. PJF was defined as a postoperative proximal junctional angle (PJA) change > 20°, fracture of the uppermost instrumented vertebra (UIV) or UIV+1 with > 20% vertebral height loss, spondylolisthesis of UIV/UIV+1 > 3 mm, or UIV screw dislodgment.

    RESULTS: One hundred sixty patients (141 women) were included in this analysis and had a median age of 62 years and a mean follow-up of 4.3 years (range 0.1-6.1 years). Forty-six patients (28.8%) had PJF at a median of 0.92 years (IQR 0.14, 1.23 years) following surgery. Based on Kaplan-Meier analyses, PJF rates at 1, 2, 3, and 4 years were 14.4%, 21.9%, 25.9%, and 27.4%, respectively. On univariate analysis, PJF was associated with greater age (p = 0.0316), greater body mass index (BMI; p = 0.0319), worse baseline patient-reported outcome measures (PROMs; ODI, SRS-22r, and SF-12 Physical Component Summary [PCS]; all p < 0.04), the use of posterior column osteotomies (PCOs; p = 0.0039), and greater postoperative thoracic kyphosis (TK; p = 0.0031) and PJA (p < 0.001). The use of UIV hooks was protective against PJF (p = 0.0340). On regression analysis (without postoperative measures), PJF was associated with greater BMI (HR 1.077, 95% CI 1.007-1.153, p = 0.0317), lower preoperative PJA (HR 0.607, 95% CI 0.407-0.906, p = 0.0146), and greater preoperative TK (HR 1.362, 95% CI 1.082-1.715, p = 0.0085). Patients with PJF had worse PROMs at the last follow-up (ODI, SRS-22r subscore and self-image, and SF-12 PCS; p < 0.04). Sixteen PJF patients (34.8%) underwent revision, and PJF recurred in 3 (18.8%).

    CONCLUSIONS: Among 160 primary ASLS patients with a median age of 62 years and predominant coronal deformity, the PJF rate was 28.8% at a mean 4.3-year follow-up, with a revision rate of 34.8%. On univariate analysis, PJF was associated with a greater age and BMI, worse baseline PROMs, the use of PCOs, and greater postoperative TK and PJA. The use of UIV hooks was protective against PJF. On multivariate analysis (without postoperative measures), a higher risk of PJF was associated with greater BMI and preoperative TK and lower preoperative PJA.

    MeSH terms: Adult; Child; Child, Preschool; Female; Follow-Up Studies; Humans; Infant; Lumbar Vertebrae/surgery; Middle Aged; Pelvis; Postoperative Complications/etiology; Prospective Studies; Retrospective Studies; Sacrum
  3. Sardi JP, Lazaro B, Smith JS, Kelly MP, Dial B, Hills J, et al.
    J Neurosurg Spine, 2023 Feb 01;38(2):217-229.
    PMID: 36461845 DOI: 10.3171/2022.8.SPINE22423
    OBJECTIVE: Previous reports of rod fracture (RF) in adult spinal deformity are limited by heterogeneous cohorts, low follow-up rates, and relatively short follow-up durations. Since the majority of RFs present > 2 years after surgery, true occurrence and revision rates remain unclear. The objectives of this study were to better understand the risk factors for RF and assess its occurrence and revision rates following primary thoracolumbar fusions to the sacrum/pelvis for adult symptomatic lumbar scoliosis (ASLS) in a prospective series with long-term follow-up.

    METHODS: Patient records were obtained from the Adult Symptomatic Lumbar Scoliosis-1 (ASLS-1) database, an NIH-sponsored multicenter, prospective study. Inclusion criteria were as follows: patients aged 40-80 years undergoing primary surgeries for ASLS (Cobb angle ≥ 30° and Oswestry Disability Index ≥ 20 or Scoliosis Research Society-22r ≤ 4.0 in pain, function, and/or self-image) with instrumented fusion of ≥ 7 levels that included the sacrum/pelvis. Patients with and without RF were compared to assess risk factors for RF and revision surgery.

    RESULTS: Inclusion criteria were met by 160 patients (median age 62 years, IQR 55.7-67.9 years). At a median follow-up of 5.1 years (IQR 3.8-6.6 years), there were 92 RFs in 62 patients (38.8%). The median time to RF was 3.0 years (IQR 1.9-4.54 years), and 73% occurred > 2 years following surgery. Based on Kaplan-Meier analyses, estimated RF rates at 2, 4, 5, and 8 years after surgery were 11%, 24%, 35%, and 49%, respectively. Baseline radiographic, clinical, and demographic characteristics were similar between patients with and without RF. In Cox regression models, greater postoperative pelvic tilt (HR 1.895, 95% CI 1.196-3.002, p = 0.0065) and greater estimated blood loss (HR 1.02, 95% CI 1.005-1.036, p = 0.0088) were associated with increased risk of RF. Thirty-eight patients (61% of all RFs) underwent revision surgery. Bilateral RF was predictive of revision surgery (HR 3.52, 95% CI 1.8-6.9, p = 0.0002), while patients with unilateral nondisplaced RFs were less likely to require revision (HR 0.39, 95% CI 0.18-0.84, p = 0.016).

    CONCLUSIONS: This study provides what is to the authors' knowledge the highest-quality data to date on RF rates following ASLS surgery. At a median follow-up of 5.1 years, 38.8% of patients had at least one RF. Estimated RF rates at 2, 4, 5, and 8 years after surgery were 11%, 24%, 35%, and 49%, respectively. Greater estimated blood loss and postoperative pelvic tilt were significant risk factors for RF. These findings emphasize the importance of long-term follow-up to realize the true prevalence and cumulative incidence of RF.

    MeSH terms: Adult; Follow-Up Studies; Humans; Lumbar Vertebrae/surgery; Middle Aged; Pelvis; Prospective Studies; Retrospective Studies; Sacrum/surgery; Thoracic Vertebrae/surgery; Treatment Outcome
  4. Lee JM, Wasserman RJ, Wilson RF, Cuthbert RN, Rahman S, Yek SH
    Ecohealth, 2023 Mar;20(1):65-73.
    PMID: 37129695 DOI: 10.1007/s10393-023-01629-8
    Fogging with insecticides is one of the main control measures for adult mosquito populations employed in countries that are affected by dengue. In many such countries, urban communities are increasingly characterised by high-density residence in high-rise condominia. Although fogging is typically applied at the ground level, its efficacy in three-dimensional urban environments is poorly understood. Here, we investigated the effect of fogging on vector mosquito distribution and abundance in high-rise condominia by conducting a before-after fogging survey. We showed that although mosquitoes were significantly concentrated at the lower levels in high-rise condominia, they were found throughout the three-dimensional environments. Fogging did not significantly alter this distribution or abundance pattern across any floor level. Thus, any fogging effect was short-lived as mosquito populations recovered within a few days before the subsequent scheduled treatment. In addition, increasing fogging frequency within practicable limits did not prolong the intended control effect. As urban mosquitoes are increasingly insusceptible to fogging due to insecticide resistance and vertical avoidance, this study demonstrates the need to implement other mosquito control strategies for high-rise condominia to manage mosquito populations.
    MeSH terms: Adult; Aedes*; Animals; Humans; Mosquito Control/methods; Mosquito Vectors
  5. Loh ZW, Mohd Zaid MH, Matori KA, Kechik MMA, Fen YW, Mayzan MZH, et al.
    J Mech Behav Biomed Mater, 2023 Jul;143:105889.
    PMID: 37150138 DOI: 10.1016/j.jmbbm.2023.105889
    This work investigates the role of sintering temperature on bioactive glass-ceramics derived from the new composition CaO-P2O5-Na2O-B2O3-SiO2 glass system. The sintering behaviour of the samples' physical, structural, and mechanical properties is highlighted in this study. The experimental results indicated that the sintering process improved the crystallization and hardness of the final product. Results from XRD and FTIR showed the existence of carbonate apatite, pseudo-wollastonite, and wollastonite phases. From the results, the bioglass-ceramics sintered at 700 °C obtained the highest densification and optimum mechanical results. It had the value of 5.34 ± 0.21 GPa regarding microhardness and 2.99 ± 0.24 MPa m1/2 concerning fracture toughness, which falls in the range of the human enamel. Also, the sintered samples maintained their bioactivity and biodegradability after being tested in the PBS medium. The bioactivity does not affect but slows down the apatite formation rate. Overall results promoted the novel bioglass-ceramics as a candidate material for dental application.
    MeSH terms: Ceramics/chemistry; Glass/chemistry; Humans; Materials Testing; Silicates*
  6. Bichi AA, Samsudin R, Hassan R, Hasan LRA, Ado Rogo A
    PLoS One, 2023;18(5):e0285376.
    PMID: 37159449 DOI: 10.1371/journal.pone.0285376
    Automatic text summarization is one of the most promising solutions to the ever-growing challenges of textual data as it produces a shorter version of the original document with fewer bytes, but the same information as the original document. Despite the advancements in automatic text summarization research, research involving the development of automatic text summarization methods for documents written in Hausa, a Chadic language widely spoken in West Africa by approximately 150,000,000 people as either their first or second language, is still in early stages of development. This study proposes a novel graph-based extractive single-document summarization method for Hausa text by modifying the existing PageRank algorithm using the normalized common bigrams count between adjacent sentences as the initial vertex score. The proposed method is evaluated using a primarily collected Hausa summarization evaluation dataset comprising of 113 Hausa news articles on ROUGE evaluation toolkits. The proposed approach outperformed the standard methods using the same datasets. It outperformed the TextRank method by 2.1%, LexRank by 12.3%, centroid-based method by 19.5%, and BM25 method by 17.4%.
    MeSH terms: Africa, Western; Algorithms*; Head*; Humans; Language; Writing
  7. Wan Mohamad Nawi WIA, K Abdul Hamid AA, Lola MS, Zakaria S, Aruchunan E, Gobithaasan RU, et al.
    PLoS One, 2023;18(5):e0285407.
    PMID: 37172040 DOI: 10.1371/journal.pone.0285407
    Improving forecasting particularly time series forecasting accuracy, efficiency and precisely become crucial for the authorities to forecast, monitor, and prevent the COVID-19 cases so that its spread can be controlled more effectively. However, the results obtained from prediction models are inaccurate, imprecise as well as inefficient due to linear and non-linear patterns exist in the data set, respectively. Therefore, to produce more accurate and efficient COVID-19 prediction value that is closer to the true COVID-19 value, a hybrid approach has been implemented. Thus, aims of this study is (1) to propose a hybrid ARIMA-SVM model to produce better forecasting results. (2) to investigate in terms of the performance of the proposed models and percentage improvement against ARIMA and SVM models. statistical measurements such as MSE, RMSE, MAE, and MAPE then conducted to verify that the proposed models are better than ARIMA and SVM models. Empirical results with three real datasets of well-known cases of COVID-19 in Malaysia show that, compared to the ARIMA and SVM models, the proposed model generates the smallest MSE, RMSE, MAE and MAPE values for the training and testing datasets, means that the predicted value from the proposed model is closer to the actual value. These results prove that the proposed model can generate estimated values more accurately and efficiently. As compared to ARIMA and SVM, our proposed models perform much better in terms of error reduction percentages for all datasets. This is demonstrated by the maximum scores of 73.12%, 74.6%, 90.38%, and 68.99% in the MAE, MAPE, MSE, and RMSE, respectively. Therefore, the proposed model can be the best and effective way to improve prediction performance with a higher level of accuracy and efficiency in predicting cases of COVID-19.
    MeSH terms: Forecasting; Humans; Malaysia; Models, Statistical; Pandemics
  8. Katip W, Rayanakorn A, Oberdorfer P, Taruangsri P, Nampuan T
    J Infect Public Health, 2023 Aug;16(8):1249-1255.
    PMID: 37295057 DOI: 10.1016/j.jiph.2023.05.024
    BACKGROUND: Carbapenem-resistant Acinetobacter baumannii (CRAB) is one of the most commonly found nosocomial infections in critically ill patients. However, the appropriate treatment period for a specific group of critically ill patients with CRAB infection is currently being debated. Therefore, our study aimed to evaluate the optimal courses of therapy for critically ill patients with CRAB infection by comparing the outcomes of colistin therapy of short duration (<14 days) versus long duration (≥ 14 days).

    METHODS: A retrospective cohort study was conducted at Nakornping Hospital on critically ill patients with CRAB infection who received either a short or long course of colistin treatment between 2015 and 2022. The primary outcome was the 30-day mortality rate while secondary outcomes were clinical response, microbiological response, and nephrotoxicity. Propensity score matching with a 1: 1 ratio was performed to reduce potential biases. Furthermore, a logistic regression model was used to estimate the odds ratio (OR).

    RESULTS: A total of 374 patients met the inclusion criteria. Two hundred and forty-eight patients were recruited after utilizing propensity scores to match patients at a 1: 1 ratio. The results from the propensity score matching analysis demonstrated that the long-course therapy group had a lower 30-day mortality rate compared to the short-course therapy group (adjusted OR (aOR) = 0.46, 95% CI: 0.26-0.83, p = 0.009). The clinical response and microbiological response rates were higher in patients who received the long course of colistin therapy compared to those receiving the short course (aOR = 3.24, 95% CI: 1.78-5.92, p = 0.001; aOR = 3.01, 95% CI: 1.63-5.57, p = 0.001). There was no significant different in the occurrence of nephrotoxicity (aOR = 1.28, 95% CI: 0.74-2.22, p = 0.368) between the two treatment groups.

    CONCLUSION: A long course of colistin therapy resulted in a lower 30-day mortality rate in critically ill patients, and better clinical and microbiological outcomes, but similar nephrotoxicity as compared to a short course of colistin therapy. Therefore, a specific subset of critically ill patients who had CRAB infection needed to be considered for a long course of therapy.

    MeSH terms: Anti-Bacterial Agents; Colistin/therapeutic use; Humans; Retrospective Studies; Carbapenems/therapeutic use; Critical Illness; Propensity Score
  9. Lim JY, Ali NM, Rajikan R, Amit N, Hamid HA, Leong HY, et al.
    Int J Med Inform, 2023 Sep;177:105120.
    PMID: 37295139 DOI: 10.1016/j.ijmedinf.2023.105120
    BACKGROUND: A dietary application can assist the caregivers of AAMDs children in auto-calculating the protein intake, hence improving dietary compliance. However, existing dietary application for patients with AAMDs only focus on delivering the nutritional content of food and monitoring the dietary intake but were lacking in other educational components.

    OBJECTIVE: To assess the uses, needs and preferences towards a dietary application among the caregivers of AAMDs patients.

    METHODS: We conducted a mixed-method study comprising focus group discussion (FGD) and a quantitative questionnaire survey among caregivers of patients aged between 6-month-old to 18-year-old with AAMDs who are receiving active treatment, both medical and dietetic treatment in the genetic clinic, Hospital Kuala Lumpur (HKL).

    RESULTS: A total of 76 and 20 caregivers participated in the survey and FGD respectively. All the caregivers (100%) possessed a smartphone and most of the caregivers (89.5%) had the experience of using smartphone or other technological devices to search for health or medical information. However, majority of the participants were not aware of the existence of any web-based or mobile application related to AAMDs (89.5%). While for the qualitative part, three themes emerged: (1) experience with current source of information; (2) needs for supporting self-management educational contents and needs for technological design application. Most of the caregivers used the nutritional booklet as sources of reference but some of them searched for web-based information. Features perceived by the caregivers included a digital food composition database, sharing diet recall with healthcare providers, self-monitoring diet intake as well as low protein recipes. Besides that, user-friendly and ease to use were also perceived as the important features by the caregivers.

    CONCLUSION: The identified features and needs by the caregivers should be integrated into the design of the apps to promote acceptance and usage.

    MeSH terms: Smartphone; Amino Acids; Child; Diet; Humans; Caregivers*; Mobile Applications*
  10. Khairun Waheeda AI, Teh JC, Arshad A, Wong NLWS
    Mar Pollut Bull, 2023 Jul;192:115111.
    PMID: 37295254 DOI: 10.1016/j.marpolbul.2023.115111
    This study investigated the impacts of the removal of sand bund on the macrobenthos community structure, seagrass cover, and sediment particle size in Merambong Shoal, Malaysia. The reclamation project deposited sand bund in the middle of Merambong seagrass shoal, resulting in its division into northern (NS) and southern (SS) halves. Ecosystem changes were monitored over a 31-month period using the transect lines method. Bi-monthly samples were collected for assessment. The results revealed a substantial decline in macrobenthos densities compared to previous studies. However, after the removal of the sand bund, there was a significant increase in macrobenthos density, specifically Polychaeta and Malacostraca, at NS. Seagrass cover at NS was initially lower than SS but showed an increase after the complete removal of the sand blockage. Sediment particle analysis reported a higher silt percentage at NS, indicating greater sedimentation at NS, which was partially sheltered from wave actions.
    MeSH terms: Animals; Malaysia; Polychaeta*; Ecosystem*; Geologic Sediments
  11. Lim RBL, Yeat CL, Vighneshvaran R, Kasinathan N, Ahmad Subki SZ, Singh AHS, et al.
    J Pain Symptom Manage, 2023 Sep;66(3):221-229.
    PMID: 37295564 DOI: 10.1016/j.jpainsymman.2023.05.017
    INTRODUCTION AND OBJECTIVES: This national audit involving Ministry of Health (MOH) Hospitals aimed to map out the levels of development of palliative care services and essential palliative medication availability in Malaysia.

    MATERIALS AND METHODS: An online survey coupled with manual follow up was conducted throughout all MOH hospitals in Malaysia. Data collected described elements of the palliative care service(PCS) based on the WHO public health model. Data was computed using a novel matrix to determine three key indices which were the 1) palliative care development score (PCDS), 2)essential medications availability score (EMAS) and 3) opioid availability score (OAS). These scores then allowed mapping of PCS according to scores of 1-4 (1=least developed, 4=most developed).

    FINDINGS: Out of all 140 MOH hospitals 88.6% (124) completed the PCDS survey, 120(85.7%) for the EMAS survey and 140 (100%) for the OAS survey. A total of 32(25.8%) hospitals had formal PCS with 8(25%) having resident palliative physicians (RPP), 8(25%) visiting palliative physicians(VPP) and 16(50%) no palliative physician (NPP). Out of these services, 17 (53%) had dedicated palliative care beds. In the PCDS survey, hospitals with PCS had significantly higher mean PCDS of 2.59 compared to 1.02 for non-PCS hospitals (P<0.001). The EMAS survey showed 109(90.8%) hospitals had EMAS of four and the OAS survey showed that 135(96.4%) hospitals had oral morphine available.

    CONCLUSION: This study shows that palliative care service development in MOH hospitals is still very limited however, majority of MOH hospitals in Malaysia have all the essential medications and oral morphine available.

    MeSH terms: Analgesics, Opioid/therapeutic use; Hospitals, Public; Humans; Morphine Derivatives; Palliative Care*; Public Health*; World Health Organization
  12. Wu Y, Liu Y, Kamyab H, Rajasimman M, Rajamohan N, Ngo GH, et al.
    Environ Res, 2023 Sep 01;232:116363.
    PMID: 37295587 DOI: 10.1016/j.envres.2023.116363
    Due to their widespread occurrence and detrimental effects on human health and the environment, endocrine-disrupting hazardous chemicals (EDHCs) have become a significant concern. Therefore, numerous physicochemical and biological remediation techniques have been developed to eliminate EDHCs from various environmental matrices. This review paper aims to provide a comprehensive overview of the state-of-the-art remediation techniques for eliminating EDHCs. The physicochemical methods include adsorption, membrane filtration, photocatalysis, and advanced oxidation processes. The biological methods include biodegradation, phytoremediation, and microbial fuel cells. Each technique's effectiveness, advantages, limitations, and factors affecting their performance are discussed. The review also highlights recent developments and future perspectives in EDHCs remediation. This review provides valuable insights into selecting and optimizing remediation techniques for EDHCs in different environmental matrices.
    MeSH terms: Biodegradation, Environmental; Humans; Hazardous Substances/toxicity; Endocrine Disruptors*; Environmental Restoration and Remediation*
  13. Ismail A, Ahid F, Thong MK, Zakaria Z
    J Med Case Rep, 2023 Jun 10;17(1):250.
    PMID: 37296475 DOI: 10.1186/s13256-023-03984-0
    BACKGROUND: The 18q- deletion syndrome is a rare congenital chromosomal disorder caused by a partial deletion of the long arm of chromosome 18. The diagnosis of a patient with this syndrome relies on the family medical history, physical examination, developmental assessment, and cytogenetic findings. However, the phenotype of patients with 18q- deletion syndrome can be highly variable, ranging from almost normal to severe malformations and intellectual disability, and normal cytogenetic findings are common, thus complicating the diagnosis. Interestingly, only few characteristic features of typical 18q- deletion syndrome were found in the patient, despite sharing the same critical region. To our knowledge, this is the first report of a Malaysian individual with 18q- terminal microdeletion diagnosed with microarray-based technology.

    CASE PRESENTATION: Here we report a 16-year-old Malaysian Chinese boy, a product of a non-consanguineous marriage, who presented with intellectual disability, facial dysmorphism, high arched palate, congenital talipes equinovarus (clubfoot), congenital scoliosis, congenital heart defect, and behavioral problems. A routine chromosome analysis on 20 metaphase cells showed a normal 46, XY G-banded karyotype. Array-based comparative genomic hybridization was performed using a commercially available 244 K 60-mer oligonucleotide microarray slide according to the manufacturer's protocol. This platform allows genome-wide survey and molecular profiling of genomic aberrations with an average resolution of about 10 kB. In addition, multiplex ligation-dependent probe amplification analysis was carried out using SALSA MLPA kit P320 Telomere-13 to confirm the array-based comparative genomic hybridization finding. Array-based comparative genomic hybridization analysis revealed a 7.3 MB terminal deletion involving chromosome band 18q22.3-qter. This finding was confirmed by multiplex ligation-dependent probe amplification, where a deletion of ten probes mapping to the 18q22.3-q23 region was detected, and further multiplex ligation-dependent probe amplification analysis on his parents showed the deletion to be de novo.

    CONCLUSION: The findings from this study expand the phenotypic spectrum of the 18q- deletion syndrome by presenting a variation of typical 18q- deletion syndrome features to the literature. In addition, this case report demonstrated the ability of the molecular karyotyping method, such as array-based comparative genomic hybridization, to assist in the diagnosis of cases with a highly variable phenotype and variable aberrations, such as 18q- deletion syndrome.

    MeSH terms: Chromosome Deletion; Chromosomes, Human, Pair 18/genetics; Humans; Comparative Genomic Hybridization
  14. Guo L, Zhu J, Wang K, Cheng KK, Xu J, Dong L, et al.
    Anal Chem, 2023 Jun 27;95(25):9714-9721.
    PMID: 37296503 DOI: 10.1021/acs.analchem.3c02002
    High-resolution reconstruction has attracted increasing research interest in mass spectrometry imaging (MSI), but it remains a challenging ill-posed problem. In the present study, we proposed a deep learning model to fuse multimodal images to enhance the spatial resolution of MSI data, namely, DeepFERE. Hematoxylin and eosin (H&E) stain microscopy imaging was used to pose constraints in the process of high-resolution reconstruction to alleviate the ill-posedness. A novel model architecture was designed to achieve multi-task optimization by incorporating multi-modal image registration and fusion in a mutually reinforced framework. Experimental results demonstrated that the proposed DeepFERE model is able to produce high-resolution reconstruction images with rich chemical information and a detailed structure on both visual inspection and quantitative evaluation. In addition, our method was found to be able to improve the delimitation of the boundary between cancerous and para-cancerous regions in the MSI image. Furthermore, the reconstruction of low-resolution spatial transcriptomics data demonstrated that the developed DeepFERE model may find wider applications in biomedical fields.
    MeSH terms: Microscopy*; Mass Spectrometry/methods
  15. Al-Rimy BAS, Saeed F, Al-Sarem M, Albarrak AM, Qasem SN
    Diagnostics (Basel), 2023 May 29;13(11).
    PMID: 37296755 DOI: 10.3390/diagnostics13111903
    Knee osteoarthritis (OA) detection is an important area of research in health informatics that aims to improve the accuracy of diagnosing this debilitating condition. In this paper, we investigate the ability of DenseNet169, a deep convolutional neural network architecture, for knee osteoarthritis detection using X-ray images. We focus on the use of the DenseNet169 architecture and propose an adaptive early stopping technique that utilizes gradual cross-entropy loss estimation. The proposed approach allows for the efficient selection of the optimal number of training epochs, thus preventing overfitting. To achieve the goal of this study, the adaptive early stopping mechanism that observes the validation accuracy as a threshold was designed. Then, the gradual cross-entropy (GCE) loss estimation technique was developed and integrated to the epoch training mechanism. Both adaptive early stopping and GCE were incorporated into the DenseNet169 for the OA detection model. The performance of the model was measured using several metrics including accuracy, precision, and recall. The obtained results were compared with those obtained from the existing works. The comparison shows that the proposed model outperformed the existing solutions in terms of accuracy, precision, recall, and loss performance, which indicates that the adaptive early stopping coupled with GCE improved the ability of DenseNet169 to accurately detect knee OA.
  16. Rahman MS, Rahman HR, Prithula J, Chowdhury MEH, Ahmed MU, Kumar J, et al.
    Diagnostics (Basel), 2023 Jun 02;13(11).
    PMID: 37296800 DOI: 10.3390/diagnostics13111948
    Heart failure is a devastating disease that has high mortality rates and a negative impact on quality of life. Heart failure patients often experience emergency readmission after an initial episode, often due to inadequate management. A timely diagnosis and treatment of underlying issues can significantly reduce the risk of emergency readmissions. The purpose of this project was to predict emergency readmissions of discharged heart failure patients using classical machine learning (ML) models based on Electronic Health Record (EHR) data. The dataset used for this study consisted of 166 clinical biomarkers from 2008 patient records. Three feature selection techniques were studied along with 13 classical ML models using five-fold cross-validation. A stacking ML model was trained using the predictions of the three best-performing models for final classification. The stacking ML model provided an accuracy, precision, recall, specificity, F1-score, and area under the curve (AUC) of 89.41%, 90.10%, 89.41%, 87.83%, 89.28%, and 0.881, respectively. This indicates the effectiveness of the proposed model in predicting emergency readmissions. The healthcare providers can intervene pro-actively to reduce emergency hospital readmission risk and improve patient outcomes and decrease healthcare costs using the proposed model.
  17. Zhang L, Zhang Z, Gao X, Matlan SJ, Taha NA
    Materials (Basel), 2023 May 24;16(11).
    PMID: 37297063 DOI: 10.3390/ma16113929
    In this study, fluorographene nanosheets (FG nanosheets) were prepared via the solvent-ultrasonic exfoliation method. The fluorographene sheets were observed using field-emission scanning electron microscopy (FE-SEM). The microstructure of the as-prepared FG nanosheets was characterized by X-ray diffraction (XRD) and a thermal analyzer (TG). The tribological properties of FG nanosheets as an additive in ionic liquids in high vacuum were compared to that of ionic liquid (IL) with graphene (IL-G). The wear surfaces and transfer films were analyzed via an optical microscope, Raman spectroscopy, scanning electron microscopy (SEM), and X-ray photoelectron spectroscopy (XPS). The results show that FG nanosheets can be obtained from the simple solvent-ultrasonic exfoliation method. The prepared G nanosheets are a sheet, and the longer the ultrasonic time is, the thinner the sheet is. Ionic liquids with FG nanosheets had low friction and a low wear rate under high vacuum conditions. The improved frictional properties were attributed to the transfer film of FG nanosheets and more formation film of Fe-F.
  18. Tang TL, Salleh H, Sadiq MI, Mohd Sabri MA, Ahmad MIM, Ghopa WAW
    Materials (Basel), 2023 May 25;16(11).
    PMID: 37297077 DOI: 10.3390/ma16113942
    Nanofluids have attracted significant attention from researchers due to their ability to significantly enhance heat transfer, especially in jet impingement flows, which can improve their cooling performance. However, there is a lack of research on the use of nanofluids in multiple jet impingements, both in terms of experimental and numerical studies. Therefore, further investigation is necessary to fully understand the potential benefits and limitations of using nanofluids in this type of cooling system. Thus, an experimental and numerical investigation was performed to study the flow structure and heat transfer behavior of multiple jet impingement using MgO-water nanofluids with a 3 × 3 inline jet array at a nozzle-to-plate distance of 3 mm. The jet spacing was set to 3, 4.5, and 6 mm; the Reynolds number varies from 1000 to 10,000; and the particle volume fraction ranges from 0% to 0.15%. A 3D numerical analysis using ANSYS Fluent with SST k-ω turbulent model was presented. The single-phase model is adopted to predict the thermal physical nanofluid. The flow field and temperature distribution were investigated. Experimental results show that a nanofluid can provide a heat transfer enhancement at a small jet-to-jet spacing using a high particle volume fraction under a low Reynolds number; otherwise, an adverse effect on heat transfer may occur. The numerical results show that the single-phase model can predict the heat transfer trend of multiple jet impingement using nanofluids correctly but with significant deviation from experimental results because it cannot capture the effect of nanoparticles.
  19. Zafar M, Sakidin H, Dzulkarnain I, Hussain A, Sheremet M, Nazar R, et al.
    Materials (Basel), 2023 May 27;16(11).
    PMID: 37297145 DOI: 10.3390/ma16114011
    Enhanced oil recovery (EOR) has been offered as an alternative to declining crude oil production. EOR using nanotechnology is one of the most innovative trends in the petroleum industry. In order to determine the maximum oil recovery, the effect of a 3D rectangular prism shape is numerically investigated in this study. Using ANSYS Fluent software(2022R1), we develop a two-phase mathematical model based on 3D geometry. This research examines the following parameters: flow rate Q = 0.01-0.05 mL/min, volume fractions = 0.01-0.04%, and the effect of nanomaterials on relative permeability. The result of the model is verified with published studies. In this study, the finite volume method is used to simulate the problem, and we run simulations at different flow rates while keeping other variables constant. The findings show that the nanomaterials have an important effect on water and oil permeability, increasing oil mobility and lowering IFT, which increases the recovery process. Additionally, it has been noted that a reduction in the flow rate improves oil recovery. Maximum oil recovery was attained at a 0.05 mL/min flow rate. Based on the findings, it is also demonstrated that SiO2 provides better oil recovery compared to Al2O3. When the volume fraction concentration increases, oil recovery ultimately increases.
  20. Nur-Akasyah J, Abd-Shukor R, Chong TV
    Materials (Basel), 2023 May 27;16(11).
    PMID: 37297156 DOI: 10.3390/ma16114022
    The effects of elemental substitutions at the Tl site of a Tl1-xXx(Ba, Sr)CaCu2O7 superconductor with X = Cr, Bi, Pb, Se, and Te were investigated. This study aimed to determine the elements that enhance and suppress the superconducting transition temperature of the Tl1-xXx(Ba, Sr)CaCu2O7 (Tl-1212) phase. The selected elements belong to the groups of transition metal, post-transition metal, non-metal, and metalloid. The relationship between the transition temperature and ionic radius of the elements was also discussed. The samples were prepared by the solid-state reaction method. The XRD patterns showed a single Tl-1212 phase was formed in the non- and Cr-substituted (x = 0.15) samples. The Cr-substituted samples (x = 0.4) showed a plate-like structure with smaller voids. The highest superconducting transition temperatures (Tc onset, Tcχ', and Tp) were also achieved by the Cr-substituted samples for x = 0.4 compositions. However, the substitution of Te suppressed the superconductivity of the Tl-1212 phase. Jc inter (Tp) for all samples was calculated to be in the range of 12-17 A/cm2. This work shows that substitution elements with a smaller ionic radius tend to be more favorable in improving the superconducting properties of the Tl-1212 phase.
External Links