Browse publications by year: 2025

  1. Lim JJ, Reginald K, Say YH, Liu MH, Chew FT
    Clin Exp Allergy, 2025 Jan 21.
    PMID: 39838549 DOI: 10.1111/cea.14629
    This cross-sequential study found that frequent intake of high-fat and high-protein foods was associated with higher odds of atopic dermatitis (AD). However, occasional intake across all three macronutrients significantly lowered AD odds, suggesting that moderation-not strict avoidance-may benefit AD management in allergic populations.
  2. Sankar J, Rajendran K, Wong LS, Muthusamy K
    Curr Hypertens Rev, 2025 Jan 20.
    PMID: 39838689 DOI: 10.2174/0115734021342501250107052350
    INTRODUCTION: Hypertension is a chronic medical state and a major determining factor for cardiovascular and renal diseases. Both genetic and non-genetic factors contribute to hypertensive conditions among individuals. The renin-angiotensin-aldosterone system (RAAS) is a major genetic target for the anti-hypertension approach.

    PURPOSE OF THE STUDY: The majority of classical antihypertensive drugs were mainly focused on the RAAS signaling pathways. Though these antihypertensive drugs control blood pressure (BP), they have mild to severe life-threatening effects. Unrevealing effective hypertensive targets for BP management is essential. The effective targets could emerge either from RAAS-dependent or RAAS-independent pathways and/or through the cross-talks among them.

    RESULTS: Analyzing the physiopathological mechanisms of hypertension has the benefit of understanding the interactions between these systems which helps in better understanding of drug targets and the importance of emergence of novel therapeutics.

    CONCLUSION: This review is about the signaling pathways involved in hypertension pathogenesis and their cross-talks and it contributes to a better understanding of the etiology of hypertension.

  3. Tan JK, Ramsingh J
    J Surg Case Rep, 2025 Jan;2025(1):rjae842.
    PMID: 39839207 DOI: 10.1093/jscr/rjae842
    Paragangliomas, a type of extra-adrenal tumour, albeit rare, are dangerous due to their high metastatic potential and risk of hypertensive crisis from massive catecholamine release. It typically presents with sympathetic overdrive symptoms such as diaphoresis, headache, and palpitation, accompanied by substantially high plasma metanephrines level and mass on contrasted computed tomography abdomen and pelvis, whilst some are found incidentally. In this report, we discuss a case of an extra-adrenal lesion located near susceptible major structures with extensive vascularisation, in a patient with near-death experience. Complete excision of the pulsatile mass with minimal bleeding and no complications, was made possible utilizing the da Vinci Robotic System. Robotic surgery, being a part of a multidisciplinary approach, leads to better patient outcomes and shorter hospitalisations. Moreover, it offers enhanced dexterity and improved depth perception compared to conventional methods. However, further studies are needed to validate its application in standard practice.
  4. Mohammad SIS, Vasudevan A, Prasad KDV, Ali IR, Kumar A, Kulshreshta A, et al.
    Heliyon, 2025 Jan 15;11(1):e41416.
    PMID: 39839518 DOI: 10.1016/j.heliyon.2024.e41416
    PURPOSE: Biodiesel is a non-toxic, renewable, and environmentally friendly fuel used in compression ignition engines. This work aimed to develop Fe3O4/SiO2 as a cheap, magnetic, and easy separable catalyst for biodiesel production from waste oil by sono-catalytic transesterification.

    METHODS: Fe₃O₄-SiO₂ was prepared using a modified Stober method and used as a heterogeneous catalyst in an ultrasound-assisted transesterification reaction to produce biodiesel. The tests were designed by the Response surface methodology by considering the molar ratio of methanol to oil (M/O), catalyst weight percentage, and sonication time as independent factors. The produced biodiesel in diesel generator engines and the emission of pollutants were evaluated.

    RESULTS: The optimal production conditions were determined using the response surface methodology, which included a molar ratio of 8.30, a catalyst weight percentage of 5.30, and a sonication time of 30.02 min. The Pareto analysis indicated that the sonication time is the most important factor in the sono-catalytic transesterification of waste oil. The evaluation of the produced fuel showed that with an increase in the percentage of biodiesel in the engine's fuel input, CO emissions decreased by 0.027 % and smoke levels by 24 %, while NOx levels increased by 495 ppm. Additionally, the increase in biodiesel percentage led to a rise in brake-specific power by 44.6 kW and brake-specific fuel consumption by 89 g/kWh though brake torque decreased by 87 Nm.

    CONCLUSION: The study introduces significant advancements in biodiesel production technology through combining heterogeneous catalysis and ultrasound processing, optimizing production parameters for efficiency and sustainability while demonstrating improved environmental performance in diesel engines.

  5. Ponraj A, Nagaraj P, Balakrishnan D, Srinivasu PN, Shafi J, Kim W, et al.
    Digit Health, 2025;11:20552076241313161.
    PMID: 39839961 DOI: 10.1177/20552076241313161
    PURPOSE: Breast cancer encompasses various subtypes with distinct prognoses, necessitating accurate stratification methods. Current techniques rely on quantifying gene expression in limited subsets. Given the complexity of breast tissues, effective detection and classification of breast cancer is crucial in medical imaging. This study introduces a novel method, MPa-DCAE, which uses a multi-patch-based deep convolutional auto-encoder (DCAE) framework combined with VGG19 to detect and classify breast cancer in histopathology images.

    METHODS: The proposed MPa-DCAE model leverages the hierarchical feature extraction capabilities of VGG19 within a DCAE framework, designed to capture intricate patterns in histopathology images. By using a multi-patch approach, regions of interest are extracted from pathology images to facilitate localized feature learning, enhancing the model's discriminatory power. The auto-encoder component enables unsupervised feature learning, increasing resilience and adaptability to variations in image features. Experiments were conducted at various magnifications on the CBIS-DDSM and MIAS datasets to validate model performance.

    RESULTS: Experimental results demonstrated that the MPa-DCAE model outperformed existing methods. For the CBIS-DDSM dataset, the model achieved a precision of 97.96%, a recall of 94.85%, and an accuracy of 98.36%. For the MIAS dataset, it achieved a precision of 97.99%, a recall of 97.2%, and an accuracy of 98.95%. These results highlight the model's robustness and potential for clinical application in computer-assisted diagnosis.

    CONCLUSION: The MPa-DCAE model, integrating VGG19 and DCAE, proves to be an effective, automated approach for diagnosing breast cancer. Its high accuracy and generalizability make it a promising tool for clinical practice, potentially improving patient care in histopathology-based breast cancer diagnosis.

  6. Ghaben SJ, Mat Ludin AF, Mohamad Ali N, Singh DKA
    Digit Health, 2025;11:20552076241307476.
    PMID: 39839963 DOI: 10.1177/20552076241307476
    BACKGROUND: The increasing prevalence and burden of chronic obstructive pulmonary disorder (COPD), the challenges in implementing pulmonary rehabilitation (PR) programs and the limited availability of alternatives and supportive programs to serve patients with COPD necessitate the development of pulmonary telerehabilitation (PTR) systems to provide patients with COPD with PR programs.

    OBJECTIVE: This study aimed to design and develop the ChestCare mobile Health app using user-centred design (UCD) approach. Thus, it provided PTR for patients with COPD, enhancing their self-management of symptoms and improving their compliance with PR programs.

    METHODS: In this mixed-methods sequential research, we deployed the UCD iterative design through the prototype app design and development sequence. The first phase was built based on the results of a previous needs assessment study and an analysis of related apps. This produced the initial mock-up, the foundation for the focus group discussions with physiotherapists and patients. Six physiotherapists with cardiorespiratory specialisation evaluated each app module and item of the latest mock-up using the content validity index (CVI) document. The I-CVI (S-CVI/Ave) and (S-CVI/UA) were computed. Qualitative and quantitative data were integrated, and decisions were made by comparing their results.

    RESULTS: The UCD iterative design through sequential MMR has generated four mock-up app versions. The latest version identified 13 modules through 150 items validated by six experts using a CVI document. The I-CVI calculation of 145 items was 1, while 0.83 for the remaining items, was within accepted values. The S-CVI scored 99.4, indicating an overall validity of the ChestCare app as a PTR system for patients with COPD.

    CONCLUSIONS: The development and validation of the ChestCare app resulted from conducting UCD iterative design and sequential MMR, which identified 13 functionalities, including symptom assessment, tracking lung volume, functional capacity test, action plan, intervention program, COPD education, COPD community, monitoring and reminders.

  7. Bakhsh A, Kim B, Ishamri I, Choi S, Li X, Li Q, et al.
    Food Sci Anim Resour, 2025 Jan;45(1):145-164.
    PMID: 39840246 DOI: 10.5851/kosfa.2024.e122
    Cell-based meat (CBM) technology is a highly promising alternative to traditional animal agriculture, with considerable advantages in terms of sustainability, animal welfare, and food security. Nonetheless, CBM's successful commercialization is dependent on efficiently dealing with several critical concerns, including ensuring biological, chemical, and nutritional safety as well as navigating the global regulatory framework. To ensure CBM's biological safety, detecting and mitigating any potential hazards introduced during the manufacturing process is crucial. Concerns include microbial contamination, the utilization of animal-derived growth media, and the risk of viral or prion infection. Similarly, chemical hazards include residues from growth media, scaffolding materials, and other bioprocessing agents. For consumer acceptance, CBM's nutritional qualities should be comparable to those of conventional meat, indicating adequate protein content, essential amino acids, vitamins, and minerals. Additionally, CBM's safety in terms of allergenicity and the presence of anti-nutritional factors must be rigorously assessed. Advances in cell culture techniques and biomanufacturing methods are requisite to achieving high-quality CBM with desirable nutritional attributes. The regulatory framework for CBM is actively expanding, with significant regional variations. Singapore is currently the only country that has received approval for the market placement of CBM, although the United States has developed a regulatory structure involving the United States Department of Agriculture and Food and Drug Administration. As CBM holds great potential as a sustainable and ethical alternative to conventional meat, addressing challenges related to biological and chemical safety, nutritional quality, and regulatory approval is essential for its successful market integration.
  8. Patel S, Teng PH, Liao WC, Davis MC, Fidler A, Haupt F, et al.
    Int Endod J, 2025 Mar;58(3):379-390.
    PMID: 39840523 DOI: 10.1111/iej.14186
    This position statement is a consensus view of an expert committee convened by the European Society of Endodontology (ESE). The statement is based on current clinical and scientific evidence as well as the collective reflective practice of the committee. The aim is to provide clinicians with evidence-based, authoritative information on the aetiology, clinical presentation, and management of cracks and fractures that typically manifest along the long axis of the crown and/or root.
    MeSH terms: Cracked Tooth Syndrome/diagnosis; Cracked Tooth Syndrome/etiology; Cracked Tooth Syndrome/therapy; Humans; Tooth Root/injuries
  9. Ang ZY, Kong YL, Md Nesran ZN, Lee SWH
    BJU Int, 2025 Feb;135(2):222-234.
    PMID: 39402746 DOI: 10.1111/bju.16545
    OBJECTIVE: To review and compare the efficacy of different delivery modes of decision aids (DAs), including computer-based, print-based, multimedia-based, video-based, and website-based on decision-making outcomes for prostate cancer screening compared to usual care (UC) and among the delivery modes.

    METHODS: PubMed, the Excerpta Medica dataBASE (EMBASE), Cumulative Index to Nursing and Allied Health Literature (CINAHL), Google Advanced Search, and Turning Research Into Practice (TRIP) Database were systematically searched from inception to August 2023. The primary outcomes were knowledge level, knowledge scores, participation in shared decision-making (SDM), decisional conflict, and preference for SDM participation. Secondary outcomes were the proportion of subjects who underwent screening (actual screening utilisation) and the proportion of subjects who intended to be screened (intention to undergo screening). Network and pairwise meta-analyses were performed using random-effects models.

    RESULTS: Seven systematic reviews were included. Network meta-analysis found that multimedia (relative risk [RR] 1.51, 95% confidence interval [CI] 1.02-2.24), print (RR 1.82, 95% CI 1.23-2.69), and website-based (RR 1.99, 95% CI 1.32-3.01) DAs significantly increased participation in SDM compared to the computer-based DA. There was a significant reduction in the actual screening utilisation in the computer DA arm compared to the other delivery modes. No significant differences between all delivery modes were noted on knowledge levels, knowledge scores, decisional conflict, preference for SDM participation, and intention to undergo screening. The highest mean surface under the cumulative ranking curve for all primary outcomes showed that website-based was the most effective delivery mode, followed by print-based DA. The pairwise meta-analysis showed a significant increase in participants' knowledge level, knowledge scores, a reduced intention to undergo screening and actual screening utilisation compared to UC.

    CONCLUSIONS: The findings suggest that different types of DAs have varying levels of effectiveness in increasing knowledge level, knowledge scores, participation in SDM, and influencing screening behaviours. While website-based DA appeared the most effective, employing the print-based DA could be a practical solution in settings with limited resources.

    MeSH terms: Decision Support Techniques*; Humans; Male; Network Meta-Analysis*
  10. Raghvan HP, Ling CHS, Yui WS, Liang BY, Jamian E, Subbiah I
    J Yeungnam Med Sci, 2025;42:17.
    PMID: 39716342 DOI: 10.12701/jyms.2025.42.17
    Chronic myeloid leukemia (CML) typically progresses from a chronic phase to an accelerated phase, and eventually to a blast crisis, often involving the bone marrow and peripheral blood, if left untreated. Central nervous system (CNS) involvement is an uncommon manifestation of CML, particularly as an isolated CNS relapse. Here, we present a rare case of CML in lymphoid blast crisis with an isolated CNS relapse. A 46-year-old female with underlying CML in lymphoid blast crisis, previously treated with chemotherapy and tyrosine kinase inhibitors, presented with visual disturbances. Imaging and cerebrospinal fluid analysis confirmed leukemic infiltration of the CNS without evidence of a systemic disease. Isolated CNS involvement is an atypical complication of CML and presents significant therapeutic challenges owing to the blood-brain barrier, which limits the efficacy of systemic therapies. Subsequently, the patient was treated with intrathecal chemotherapy targeting the CNS. Despite aggressive treatment, CNS relapse remains a major concern due to the limited penetration of standard therapies into the CNS. This case underscores the importance of early recognition of CNS symptoms in CML patients, particularly in those with blast crisis, and highlights the need for tailored therapeutic strategies to manage this rare and challenging manifestation.
  11. Zohora FT, Pathmanathan R, Chowdhury EH
    ACS Appl Bio Mater, 2025 Jan 20;8(1):348-367.
    PMID: 39723844 DOI: 10.1021/acsabm.4c01319
    Naked siRNAs are sensitive to enzymatic degradation, phagocytic entrapment, quick renal excretion, membrane impermeability, endosomal escape, and off-target effects. Designing a safe and efficient nanocarrier for siRNA delivery to the target site without toxicity remains a significant hurdle in gene therapy. CA is a unique derivative of hydroxyapatite and a highly pH-sensitive nanocarrier with strong particle aggregation and a high polydispersity index. Strontium (Sr2+), a group two divalent metal in the periodic table, has been reported for substituting calcium (Ca2+) ions from the apatite lattice and limiting particle growth/aggregation. This study used strontium chloride hexahydrate (SrCl2·6H2O) salt to develop a Sr-substituted CA (Sr-CA) nanocarrier with ∼30 nm size, spherical shape, less aggregation, homodispersity, and a fair anionic charge. Sr-CA demonstrated a large surface area-to-volume ratio, an improved cargo loading efficiency, and enhanced cellular uptake in HEK-293 cells. Moreover, Sr-CA is a pH-responsive nanocarrier responsible for its long physiological stability, efficient endosomal escape, and optimal cargo delivery within cells. These NPs have differential effects on MAPK1, MAP2K4, PIK3Ca, CAMK4, and p53 gene expression in HEK-293 cells without showing any significant cytotoxicity in cell growth properties. Gene silencing by Sr-CA-mediated siRNA delivery against MAPK1, MAP2K4, PIK3Ca, and CAMK4 genes significantly decreased the level of target gene expression and cell survival, demonstrating successful intracellular siRNA delivery in HEK-293 cells. Additionally, biocompatibility testing confirmed the biological safety of the Sr-CA nanocarrier in mice. These findings suggest that Sr-CA nanocarriers are a promising siRNA delivery system, combining high efficiency with pH-sensitive release and excellent biocompatibility, making them a viable option for future therapeutic applications.
    MeSH terms: Animals; Cell Survival/drug effects; Drug Carriers/chemistry; Humans; Hydrogen-Ion Concentration; Materials Testing*; Particle Size*; Mice; Nanoparticles/chemistry; HEK293 Cells
  12. Jeffery N, Mock PY, Yang K, Tham CL, Israf DA, Li H, et al.
    Future Med Chem, 2025 Jan;17(2):237-257.
    PMID: 39727147 DOI: 10.1080/17568919.2024.2447226
    Methamphetamine (METH) is a highly addictive illicit psychostimulant with a significant annual fatality rate. Emerging studies highlight its role in neuroinflammation and a range of neurological disorders. This review examines the current landscape of potential drug targets for managing neuroinflammation in METH use disorders (MUDs), with a particular focus on the rationale behind targeting Toll-like receptor 4 (TLR4), the NLR family pyrin domain containing 3 (NLRP3) inflammasome, and other promising targets. Given the multifactorial neurological effects of METH, including cognitive impairment and neurodegeneration, addressing METH-induced neuroinflammation has shown considerable promise in partially mitigating the damaging effects on the central nervous system and improving behavioral outcomes. This article provides an overview of the existing understanding while charting a promising path forward for developing innovative MUD treatments, focusing on neuroinflammation as a therapeutic target. Targeting neuroinflammation in METH-induced neurological disorders shows significant promise in mitigating cognitive impairment and neurodegeneration, offering a potential therapeutic strategy for improving outcomes in MUD. While challenges remain in optimizing treatments, ongoing research into combination therapies, novel drug delivery systems, and neuroprotective agents suggests a positive outlook for more effective interventions.
    MeSH terms: Central Nervous System Stimulants/pharmacology; Animals; Humans; Inflammation/drug therapy; Inflammation/metabolism; Methamphetamine*; Neuroprotective Agents/pharmacology; Neuroprotective Agents/chemistry; Toll-Like Receptor 4/antagonists & inhibitors; Toll-Like Receptor 4/metabolism; Inflammasomes/metabolism; NLR Family, Pyrin Domain-Containing 3 Protein/antagonists & inhibitors; NLR Family, Pyrin Domain-Containing 3 Protein/metabolism
  13. Jeong JH, Saniasiaya J, McCaffer C
    Int J Pediatr Otorhinolaryngol, 2025 Feb;189:112234.
    PMID: 39826238 DOI: 10.1016/j.ijporl.2025.112234
    OBJECTIVE: Aspirated foreign bodies (FB) are potentially life-threatening conditions which can be challenging to diagnose in children. The previous similar study from our hospital, published in 2014, created a guideline suggesting when to proceed to laryngobronchoscopy (LB) in suspected FB aspiration with over 99 % sensitivity. The grading system included the presence or absence of acute history, positive examination, and/or radiological findings, including witnessed choking, dysphonia, stridor, wheezing, or reduced air entry on examination or abnormal radiological findings. The current study reviewed a further 10 years and 5 months of data to re-evaluate the ongoing diagnostic usefulness of the three positive findings in children with suspicion of aspirated FB.

    METHODS: We undertook a retrospective review of all LB performed at our institution for suspected acute FB aspiration from August 2013 to January 2023. We analysed patient characteristics, clinical examination, radiological findings, and outcomes.

    RESULTS: We found a total of 100 children under the age of 16 years who underwent LB for suspected FB aspiration. The mean age of our study population was 2.6 years. The population demographics were similar to the results from the previous study from our institution, with Māori and Pasifika children having the highest probability of finding a FB on LB. Male children presenting for suspected FB aspiration are 1.39 times more likely than female children to have a foreign body at LB (p = 0.04). Overall, having two or more positive findings had a sensitivity of 100 %. History or examination alone are more sensitive (both 95.6 %) but less specific (12.5 % and 31.3 %, respectively). Abnormal radiology alone was more specific (75.0) but less sensitive (77.9 %). The most common site of FB was the right bronchial tree (45.6 %), followed by the left (39.7 %). 95 % of FB were organic, and 54 % were nuts. The negative bronchoscopy rate was 32 %.

    CONCLUSION: Two or more positive indicators in history, examination and radiological findings continue to be highly sensitive predictors for the presence of an aspirated foreign body in our paediatric population. We recommend a future large-scale multicentre study to confirm how applicable these findings would be to a broader cohort of patients.

    MeSH terms: Adolescent; Airway Obstruction/diagnosis; Airway Obstruction/etiology; Bronchoscopy*; Child; Child, Preschool; Female; Humans; Infant; Laryngoscopy*; Male; New Zealand; Retrospective Studies; Respiratory Aspiration/diagnosis; Tertiary Care Centers*
  14. Chan JC, Lee CT, Say YH, Lin YF, Tsai MC
    J Psychiatr Res, 2025 Feb;182:277-283.
    PMID: 39826378 DOI: 10.1016/j.jpsychires.2025.01.017
    BACKGROUND: Adverse childhood events (ACEs) have been associated with an increased risk of psychiatric disorders in young adulthood. To identify at-risk individuals and potential strategies to combat the negative impacts of ACE, this study investigated the mediating role of exercise in the relationship between psychological distress and ACEs. Further, we examined the moderating effect of the BDNF polymorphism in the mediation relationship.

    METHODS: Participants (N = 750, Mage = 20.1 years) completed questionnaires assessing ACEs divided into adverse environment (AE) and childhood maltreatment (CM), exercise, and psychological distress. Salivary genomic DNA was used for genotyping. The significance of the moderated mediation model was assessed using bootstrapping.

    RESULTS: There was a significant association between ACEs and psychological distress mediated by exercise. After addition of BDNF polymorphism, we found that the effect of ACEs on psychological distress through exercise was moderated by the BDNF polymorphism (index of moderated mediation = -0.19, [-0.48, -0.04], p-value ≤0.05). Further dividing ACE into AE and CM, the moderated mediation relationship remains significant only with AE (index of moderated mediation = -0.41, [-0.99, -0.10], p-value ≤0.05).

    CONCLUSIONS: The interaction between BDNF polymorphism and exercise may be a suitable target for interventions in ACEs-experienced individuals for the prevention or reduction of psychological distress.

    MeSH terms: Adult Survivors of Child Adverse Events/statistics & numerical data; Adolescent; Adult; Child Abuse/psychology; Child Abuse/statistics & numerical data; Female; Humans; Male; Stress, Psychological; Polymorphism, Single Nucleotide; Adult Survivors of Child Abuse/statistics & numerical data; Young Adult; Gene-Environment Interaction
  15. Hassan RA, Abu Hanifah S, Heng LY
    Talanta, 2025 Jan 13;287:127592.
    PMID: 39826470 DOI: 10.1016/j.talanta.2025.127592
    The scientific literature on molecularly imprinted polymers (MIPs) has grown significantly in the past decades, reflecting an increasing interest in their potential applications. MIPs are valued for their ability to selectively detect a broad range of analytes and mimic biological recognition in different environmental conditions. This review utilises data (Scopus data from 2010 to 2024) from a bibliometric visualisation with VOSviewer (version 1.6.2) to identify trends and research hotspots in developing MIP-based sensors. The findings from this review indicated notable advancements in molecular imprinting technology (MIT) and the challenges MIP technology faces. It also discusses how various optimisation preparation techniques can be used to overcome the inherent limitations of MIP synthesis. The review also presents a case investigation and suggests classifying MIPs as chemosensors (chemical sensors) rather than biosensors to resolve the confusion and classification difficulties encountered in the existing literature on MIP sensors. It also addresses critical issues regarding the paradoxical lack of MIP-based sensors in the commercial market despite a marked increase in scientific output. The review outlines future research directions to enhance MIP sensor technology further. It emphasises the need for more collaboration between academia and industry to bridge existing gaps and accelerate commercialisation.
  16. Zulhafiz NA, Teoh TC, Chin AV, Chang SW
    Comput Methods Programs Biomed, 2025 Apr;261:108604.
    PMID: 39826482 DOI: 10.1016/j.cmpb.2025.108604
    BACKGROUND: Alzheimer's disease (AD), the most prevalent form of dementia, remains enigmatic in its origins despite the widely accepted "amyloid hypothesis," which implicates amyloid-beta peptide aggregates in its pathogenesis and progression. Despite advancements in technology and healthcare, the incidence of AD continues to rise. The traditional drug development process remains time-consuming, often taking years to bring an AD treatment to market. Drug repurposing has emerged as a promising strategy for developing cost-effective and efficient therapeutic options by identifying new uses for existing approved drugs, thus accelerating drug development.

    OBJECTIVES: This study aimed to examine two key drug repurposing methodologies in general diseases and specifically in AD, which are artificial intelligent (AI) approach and molecular docking approach. In addition, the hybrid approach that integrates AI with molecular docking techniques will be explored too.

    METHODOLOGY: This study systematically compiled a comprehensive collection of relevant academic articles, scientific papers, and research studies which were published up until November 2024 (as of the writing of this review paper). The final selection of papers was filtered to include studies related to Alzheimer's disease and general diseases, and then categorized into three groups: AI articles, molecular docking articles, and hybrid articles.

    RESULTS: As a result, 331 papers were identified that employed AI for drug repurposing in general diseases, and 58 papers focused specifically in AD. For molecular docking in drug repurposing, 588 papers addressed general diseases, while 46 papers were dedicated to AD. The hybrid approach combining AI and molecular docking in drug repurposing has 52 papers for general diseases and 9 for AD. A comparative review was done across the methods, results, strengths, and limitations in those studies. Challenges of drug repurposing in AD are explored and future prospects are proposed.

    DISCUSSION AND CONCLUSION: Drug repurposing emerges as a compelling and effective strategy within AD research. Both AI and molecular docking methods exhibit significant potential in this domain. AI algorithms yield more precise predictions, thus facilitating the exploration of new therapeutic avenues for existing drugs. Similarly, molecular docking techniques revolutionize drug-target interaction modelling, employing refined algorithms to screen extensive drug databases against specific target proteins. This review offers valuable insights for guiding the utilization of AI, molecular docking, or their hybrid in AD drug repurposing endeavors. The hope is to speed up the timeline of drug discovery which could improve the therapeutic approach to AD.

    MeSH terms: Artificial Intelligence*; Humans; Drug Repositioning*; Molecular Docking Simulation*
  17. Yin J, Waman VP, Sen N, Firdaus-Raih M, Lam SD, Orengo C
    Structure, 2025 Jan 15.
    PMID: 39826548 DOI: 10.1016/j.str.2024.12.016
    ATP-pyrophosphatases (ATP-PPases) are the most primordial lineage of the large and diverse HUP (high-motif proteins, universal stress proteins, ATP-pyrophosphatase) superfamily. There are four different ATP-PPase substrate-specificity groups (SSGs), and members of each group show considerable sequence variation across the domains of life despite sharing the same catalytic function. Owing to the expansion in the number of ATP-PPase domain structures from advances in protein structure prediction by AlphaFold2 (AF2), we have characterized the two most populated ATP-PPase SSGs, the nicotinamide adenine dinucleotide synthases (NADSs) and guanosine monophosphate synthases (GMPSs). Local structural and sequence comparisons of NADS and GMPS identified taxonomic-group-specific functional motifs. As GMPS and NADS are potential drug targets of pathogenic microorganisms including Mycobacterium tuberculosis, bacterial GMPS and NADS specific functional motifs reported in this study, may contribute to antibacterial-drug development.
  18. Fong KY, Yuen SKK, Somani BK, Malkhasyan V, Tanidir Y, Persaud S, et al.
    Urology, 2025 Jan 16.
    PMID: 39826806 DOI: 10.1016/j.urology.2025.01.029
    OBJECTIVE: To study the long-term outcomes of the flexible and navigable suction ureteral access sheath (FANS) in flexible ureteroscopy (FURS). FANS has well-established efficiency and 30-day perioperative safety; however, its influence on pelvicalyceal and ureteric anatomy remains to be investigated.

    METHODS: This was a prospective study of patients with normal renal anatomy who underwent FURS with FANS for renal stones from April 2023 to August 2024 in 16 centers worldwide. Thirty-day postoperative stone-free rate and delayed complications after 3 months were analyzed with a non-contrast CT scan and contrasted CT urogram respectively. The primary aim was to report if FANS could potentially cause pelviureteric junction, pelvicalyceal or ureteric complications.

    RESULTS: Three hundred-ten patients were analyzed. Median age was 51; median stone volume was 1584 mm3. Disposable scopes were used in 58.1%. Predominant laser energies were Thulium fiber laser (56.1%) followed by Thulium-YAG laser (20.6%). Median laser time was 14 minutes, median ureteroscopy time was 30 minutes, and median total operation time was 45 minutes. Ureteric injury occurred in 11 patients (3.5%), of which 10 were Traxer-Thomas Grade 1. On 30-day NCCT, 63.5% of patients had zero residual fragments; overall stone-free status was seen in 95.1%. Thirty-day reintervention rate was 4.2% (13 cases). Three-month CT urogram showed ureteric stenosis in only 1 patient (0.3%) who was managed by dilatation and stenting. No other anatomical anomalies were recorded.

    CONCLUSION: The extremely low rates of 3-month adverse outcomes, high immediate SFR, and low 30-day reintervention rates further strengthen the evidence for safety and effectiveness of FANS.

  19. St Peter SD, Noel-MacDonnell JR, Hall NJ, Eaton S, Suominen JS, Wester T, et al.
    Lancet, 2025 Jan 18;405(10474):233-240.
    PMID: 39826968 DOI: 10.1016/S0140-6736(24)02420-6
    BACKGROUND: Support for the treatment of uncomplicated appendicitis with non-operative management rather than surgery has been increasing in the literature. We aimed to investigate whether treatment of uncomplicated appendicitis with antibiotics in children is inferior to appendicectomy by comparing failure rates for the two treatments.

    METHODS: In this pragmatic, multicentre, parallel-group, unmasked, randomised, non-inferiority trial, children aged 5-16 years with suspected non-perforated appendicitis (based on clinical diagnosis with or without radiological diagnosis) were recruited from 11 children's hospitals in Canada, the USA, Finland, Sweden, and Singapore. Patients were randomly assigned (1:1) to the antibiotic or the appendicectomy group with an online stratified randomisation tool, with stratification by sex, institution, and duration of symptoms (≥48 h vs <48 h). The primary outcome was treatment failure within 1 year of random assignment. In the antibiotic group, failure was defined as removal of the appendix, and in the appendicectomy group, failure was defined as a normal appendix based on pathology. In both groups, failure was also defined as additional procedures related to appendicitis requiring general anaesthesia. Interim analysis was done to determine whether inferiority was to be declared at the halfway point. We used a non-inferiority design with a margin of 20%. All outcomes were assessed in participants with 12-month follow-up data. The trial was registered at ClinicalTrials.gov (NCT02687464).

    FINDINGS: Between Jan 20, 2016, and Dec 3, 2021, 936 patients were enrolled and randomly assigned to appendicectomy (n=459) or antibiotics (n=477). At 12-month follow-up, primary outcome data were available for 846 (90%) patients. Treatment failure occurred in 153 (34%) of 452 patients in the antibiotic group, compared with 28 (7%) of 394 in the appendicectomy group (difference 26·7%, 90% CI 22·4-30·9). All but one patient meeting the definition for treatment failure with appendicectomy were those with negative appendicectomies. Of those who underwent appendicectomy in the antibiotic group, 13 (8%) had normal pathology. There were no deaths or serious adverse events in either group. The relative risk of having a mild-to-moderate adverse event in the antibiotic group compared with the appendicectomy group was 4·3 (95% CI 2·1-8·7; p<0·0001).

    INTERPRETATION: Based on cumulative failure rates and a 20% non-inferiority margin, antibiotic management of non-perforated appendicitis was inferior to appendicectomy.

    FUNDING: None.

    MeSH terms: Acute Disease; Adolescent; Appendectomy*; Canada; Child; Child, Preschool; Female; Humans; Male; Singapore; Treatment Failure
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