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Fulltext Pediatric melioidosis in Sarawak, Malaysia: Epidemiological, clinical and microbiological characteristics

Mohan A, Podin Y, Tai N, Chieng CH, Rigas V, Machunter B, et al.

PLoS Negl Trop Dis, 2017 Jun;11(6):e0005650.
PMID: 28599008 DOI: 10.1371/journal.pntd.0005650

BACKGROUND: Melioidosis is a serious, and potentially fatal community-acquired infection endemic to northern Australia and Southeast Asia, including Sarawak, Malaysia. The disease, caused by the usually intrinsically aminoglycoside-resistant Burkholderia pseudomallei, most commonly affects adults with predisposing risk factors. There are limited data on pediatric melioidosis in Sarawak.
METHODS: A part prospective, part retrospective study of children aged <15 years with culture-confirmed melioidosis was conducted in the 3 major public hospitals in Central Sarawak between 2009 and 2014. We examined epidemiological, clinical and microbiological characteristics.
FINDINGS: Forty-two patients were recruited during the 6-year study period. The overall annual incidence was estimated to be 4.1 per 100,000 children <15 years, with marked variation between districts. No children had pre-existing medical conditions. Twenty-three (55%) had disseminated disease, 10 (43%) of whom died. The commonest site of infection was the lungs, which occurred in 21 (50%) children. Other important sites of infection included lymph nodes, spleen, joints and lacrimal glands. Seven (17%) children had bacteremia with no overt focus of infection. Delays in diagnosis and in melioidosis-appropriate antibiotic treatment were observed in nearly 90% of children. Of the clinical isolates tested, 35/36 (97%) were susceptible to gentamicin. Of these, all 11 isolates that were genotyped were of a single multi-locus sequence type, ST881, and possessed the putative B. pseudomallei virulence determinants bimABp, fhaB3, and the YLF gene cluster.
CONCLUSIONS: Central Sarawak has a very high incidence of pediatric melioidosis, caused predominantly by gentamicin-susceptible B. pseudomallei strains. Children frequently presented with disseminated disease and had an alarmingly high death rate, despite the absence of any apparent predisposing risk factor.

Matched MeSH terms: Rain
Fulltext The effect of vaccination coverage and climate on Japanese encephalitis in Sarawak, Malaysia

Impoinvil DE, Ooi MH, Diggle PJ, Caminade C, Cardosa MJ, Morse AP, et al.

PLoS Negl Trop Dis, 2013;7(8):e2334.
PMID: 23951373 DOI: 10.1371/journal.pntd.0002334

BACKGROUND: Japanese encephalitis (JE) is the leading cause of viral encephalitis across Asia with approximately 70,000 cases a year and 10,000 to 15,000 deaths. Because JE incidence varies widely over time, partly due to inter-annual climate variability effects on mosquito vector abundance, it becomes more complex to assess the effects of a vaccination programme since more or less climatically favourable years could also contribute to a change in incidence post-vaccination. Therefore, the objective of this study was to quantify vaccination effect on confirmed Japanese encephalitis (JE) cases in Sarawak, Malaysia after controlling for climate variability to better understand temporal dynamics of JE virus transmission and control.
METHODOLOGY/PRINCIPAL FINDINGS: Monthly data on serologically confirmed JE cases were acquired from Sibu Hospital in Sarawak from 1997 to 2006. JE vaccine coverage (non-vaccine years vs. vaccine years) and meteorological predictor variables, including temperature, rainfall and the Southern Oscillation index (SOI) were tested for their association with JE cases using Poisson time series analysis and controlling for seasonality and long-term trend. Over the 10-years surveillance period, 133 confirmed JE cases were identified. There was an estimated 61% reduction in JE risk after the introduction of vaccination, when no account is taken of the effects of climate. This reduction is only approximately 45% when the effects of inter-annual variability in climate are controlled for in the model. The Poisson model indicated that rainfall (lag 1-month), minimum temperature (lag 6-months) and SOI (lag 6-months) were positively associated with JE cases.
CONCLUSIONS/SIGNIFICANCE: This study provides the first improved estimate of JE reduction through vaccination by taking account of climate inter-annual variability. Our analysis confirms that vaccination has substantially reduced JE risk in Sarawak but this benefit may be overestimated if climate effects are ignored.

Matched MeSH terms: Rain
Temporal patterns and source apportionment of nitrate-nitrogen leaching in a paddy field at Kelantan, Malaysia

Hussain H, Yusoff MK, Ramli MF, Abd Latif P, Juahir H, Zawawi MA

Pak J Biol Sci, 2013 Nov 15;16(22):1524-30.
PMID: 24511695

Nitrate-nitrogen leaching from agricultural areas is a major cause for groundwater pollution. Polluted groundwater with high levels of nitrate is hazardous and cause adverse health effects. Human consumption of water with elevated levels of NO3-N has been linked to the infant disorder methemoglobinemia and also to non-Hodgkin's disease lymphoma in adults. This research aims to study the temporal patterns and source apportionment of nitrate-nitrogen leaching in a paddy soil at Ladang Merdeka Ismail Mulong in Kelantan, Malaysia. The complex data matrix (128 x 16) of nitrate-nitrogen parameters was subjected to multivariate analysis mainly Principal Component Analysis (PCA) and Discriminant Analysis (DA). PCA extracted four principal components from this data set which explained 86.4% of the total variance. The most important contributors were soil physical properties confirmed using Alyuda Forecaster software (R2 = 0.98). Discriminant analysis was used to evaluate the temporal variation in soil nitrate-nitrogen on leaching process. Discriminant analysis gave four parameters (hydraulic head, evapotranspiration, rainfall and temperature) contributing more than 98% correct assignments in temporal analysis. DA allowed reduction in dimensionality of the large data set which defines the four operating parameters most efficient and economical to be monitored for temporal variations. This knowledge is important so as to protect the precious groundwater from contamination with nitrate.

Matched MeSH terms: Rain
Fulltext Waterborne parasites: a current status from the Philippines

Onichandran S, Kumar T, Salibay CC, Dungca JZ, Tabo HA, Tabo N, et al.

Parasit Vectors, 2014;7:244.
PMID: 24885105 DOI: 10.1186/1756-3305-7-244

Despite the amount of awareness created, waterborne disease still poses threat, especially in developing countries. Due to the scarcity of reported data on waterborne parasites, the consumption of unsafe water prolongs. Thus, the occurrences of waterborne parasites from various samples were investigated from one of the Southeast Asian country, the Philippines.

Matched MeSH terms: Rain
Fulltext Landslide susceptibility mapping using averaged weightage score and GIS: a case study at Kuala Lumpur

Mahmud, A.R., Awad, A., Billa, R.

Pertanika Journal of Science & Technology, 2013;21(2):473-486.
MyJurnal

Many residential areas of Kuala Lumpur are susceptible to landslides; this is seen in the frequency of landslide occurences in these areas. The objective of this study is to delineate landslide risk areas in support of development planning, monitoring and control of unstable areas. In this study, five landslide causative factors were extracted from satellite imagery and maps provided by the Geological Survey Department of Malaysia. Factors included in the study including land use, river density and lineament derived from Landsat ETM image, precipitation amount from rain gauge stations and lithology, were extracted from the geological map of the study area. Layers were analyzed and divided into subclasses. An average weightage score was applied to calculate the subclasses into percentage weights of influence on landslide. Overlay, geo-processing and geo-statistic techniques in GIS were used to discriminate these weighted subclasses into landslide susceptibility at low, medium and high levels of risk areas. Results showed very high susceptible areas covering 0.21% of Kuala Lumpur of which 5.02% were found in the highly urbanized areas. Meanwhile, a landslide susceptibility map was generated to show low, medium and high susceptible areas in Kuala Lumpur. Results were verified using recorded cases of landslides in Kuala Lumpur which showed a 77% agreement with the study.

Matched MeSH terms: Rain
Collapsibility and volume change behavior of unsaturated residual soil

Huat, Bujang B.K, Faisal AIi, Choong, Foong Heng

Pertanika Journal of Science & Technology, 2007;15(2):85-94.
MyJurnal

Residual soils occur in most countries of the world but the greater areas and depths are normally found in tropical humid areas. In these places, the soil forming processes are still very active and the weathering is much faster than the erosive factor. Most residual exhibit high soil suctions for most of the year. The absence of positive pore water pressure except immediately after rain, renders conventional soil mechanics for saturated soil irrelevant. In particular, the effective stress theories of saturated soil are not applicable at the practical leve l. Ignorance or lack of understanding of the geotechnical behavior of soil in the partially or unsaturated state has caused a lot of damages to infrastructures, buildings and other structures. For instances, the collapsibility and volume change of partially saturated soils in connection with the drying or wetting causes a lot of damage to foundation, roads and other structures. As such, the development of extended soil mechanics, which embraces the soil in the unsaturated state or subjected to soil suction, is essential. This paper examines the collapsibility and volume change behavior specifically of an unsaturated residual soil under various levels of applied matric suction (u -u ), and net mean stress (a-u) in a predetermined stress path. The volume change of ;he"' soil is found to be sensitive to both the applied matric suction and net mean stress. The soil is found to exhibit a collapsibility behavior upon a reduction in applied matric suction to 25 kPa at constant net mean stress.

Matched MeSH terms: Rain
Fulltext Effects of tillage methods and sowing rates on the grain yields and yield components of rain fed wheat

Shamsabadi, H.T., Biabani, A., Desa Ahmad

Pertanika Journal of Science & Technology, 2009;17(2):-.
MyJurnal

A field study was conducted on the effect of four primary tillage implements and three seed densities on the grain yield of rain fed wheat (Tajan cultivar), using a drill planting machine with the end wheels. The experimental design was a split plot design in a 4×3 factorial with three replications. In this study, the main plots were the tillage treatments, namely Mouldboard plough, Disc Plough, Chisel Plough, Offset Disc, and sub-plots were seed rates of 350, 400 and 450 seeds.m-2. Determinations included grain yield and selected yield components. The results showed that grain yield was not affected by the densities of seed and tillage machine treatments. The use of Chisel Plough, with 400 seeds.m-2 sowing rate, had the highest grain yield of wheat grown in the Golestan province (Iran), a region with an average annual rainfall of 450 mm.

Matched MeSH terms: Edible Grain; Rain
Fulltext Storm runoff pollution from a residential catchment in Miri, Sarawak

Ho, C. L. I., Choo, B. Q.

Pertanika Journal of Science & Technology, 2014;22(2):603-611.
MyJurnal

In this paper, stormwater runoff from a residential catchment located in Miri, Sarawak, was characterized to determine the pollutant concentrations and loading. The observed average event mean concentrations were 116 mg/L for TSS, 115 mg/L for COD, 1.5 mg/L for NH3-N, and 0.23 mg/L for Pb. Based on Interim National Water Quality Standards (INWQS) for Malaysia, the average event mean concentration, EMC value for TSS exceeded class II (50 mg/L), exceeded class V (>100 mg/L) for COD, and exceeded class III (0.9 mg/L) for NH3-N. All four water quality parameters exhibited first flush characteristic but to varying magnitude which was influenced by the storm characteristics.

Matched MeSH terms: Rain
Fulltext Green wall for retention of stormwater

Mah, D.Y.S., Lau, J.T.

Pertanika Journal of Science & Technology, 2018;26(1):283-298.
MyJurnal

Urbanisation increases the level of imperviousness in a catchment, and more runoff is converted from rainfall in urban areas. To mitigate this adverse situation, dispensed green infrastructure presents the best solution for delivering results in reducing stormwater impact. Green roofs and rain gardens are extensively studied and widely available in the literature, but this is not the case for green walls, which more often than not, are treated as ornaments. Thus, this study developed a computer-aided stormwater model that incorporates a green wall to investigate its effectiveness as an urban drainage system. The effectiveness of employing a green wall as a stormwater component is tested using USEPA SWMM 5.1 and the embedded bioretention cell interface. Four simulation models according to different conditions and precipitation input are tested, compared and discussed. The conditions include investigation of different soil types, average recurrence interval (ARI) and storm duration with design and observed rainfall. The results reveal that synthesis precipitation data, used in Scenario 1, 2 and 3, decreased runoff by more than half, at 55% on condition of one-year ARI and 5 minutes of storm duration. Meanwhile, Scenario 4 also shows a repetition of runoff reduction by half after the integration of the green wall using the observed rainfall data. Thus, it is verified that a green wall can be effectively used as an urban drainage system in reducing surface runoff.

Matched MeSH terms: Rain
Fulltext Long-term responses of rainforest erosional systems at different spatial scales to selective logging and climatic change

Walsh RP, Bidin K, Blake WH, Chappell NA, Clarke MA, Douglas I, et al.

Philos Trans R Soc Lond B Biol Sci, 2011 Nov 27;366(1582):3340-53.
PMID: 22006973 DOI: 10.1098/rstb.2011.0054

Long-term (21-30 years) erosional responses of rainforest terrain in the Upper Segama catchment, Sabah, to selective logging are assessed at slope, small and large catchment scales. In the 0.44 km(2) Baru catchment, slope erosion measurements over 1990-2010 and sediment fingerprinting indicate that sediment sources 21 years after logging in 1989 are mainly road-linked, including fresh landslips and gullying of scars and toe deposits of 1994-1996 landslides. Analysis and modelling of 5-15 min stream-suspended sediment and discharge data demonstrate a reduction in storm-sediment response between 1996 and 2009, but not yet to pre-logging levels. An unmixing model using bed-sediment geochemical data indicates that 49 per cent of the 216 t km(-2) a(-1) 2009 sediment yield comes from 10 per cent of its area affected by road-linked landslides. Fallout (210)Pb and (137)Cs values from a lateral bench core indicate that sedimentation rates in the 721 km(2) Upper Segama catchment less than doubled with initially highly selective, low-slope logging in the 1980s, but rose 7-13 times when steep terrain was logged in 1992-1993 and 1999-2000. The need to keep steeplands under forest is emphasized if landsliding associated with current and predicted rises in extreme rainstorm magnitude-frequency is to be reduced in scale.

Matched MeSH terms: Rain/chemistry
Primary forest dynamics in lowland dipterocarp forest at Danum Valley, Sabah, Malaysia, and the role of the understorey

Newbery DM, Kennedy DN, Petol GH, Madani L, Ridsdale CE

Philos Trans R Soc Lond B Biol Sci, 1999 Nov 29;354(1391):1763-82.
PMID: 11605620

Changes in species composition in two 4-ha plots of lowland dipterocarp rainforest at Danum, Sabah, were measured over ten years (1986-1996) for trees > or = 10 cm girth at breast height (gbh). Each included a lower-slope to ridge gradient. The period lay between two drought events of moderate intensity but the forest showed no large lasting responses, suggesting that its species were well adapted to this regime. Mortality and recruitment rates were not unusual in global or regional comparisons. The forest continued to aggrade from its relatively (for Sabah) low basal area in 1986 and, together with the very open upper canopy structure and an abundance of lianas, this suggests a forest in a late stage of recovery from a major disturbance, yet one continually affected by smaller recent setbacks. Mortality and recruitment rates were not related to population size in 1986, but across subplots recruitment was positively correlated with the density and basal area of small trees (10-< 50cm gbh) forming the dense understorey. Neither rate was related to topography. While species with larger mean gbh had greater relative growth rates (rgr) than smaller ones, subplot mean recruitment rates were correlated with rgr among small trees. Separating understorey species (typically the Euphorbiaceae) from the overstorey (Dipterocarpaceae) showed marked differences in change in mortality with increasing gbh: in the former it increased, in the latter it decreased. Forest processes are centred on this understorey quasi-stratum. The two replicate plots showed a high correspondence in the mortality, recruitment, population changes and growth rates of small trees for the 49 most abundant species in common to both. Overstorey species had higher rgrs than understorey ones, but both showed considerable ranges in mortality and recruitment rates. The supposed trade-off in traits, viz slower rgr, shade tolerance and lower population turnover in the understorey group versus faster potential growth rate, high light responsiveness and high turnover in the overstorey group, was only partly met, as some understorey species were also very dynamic. The forest at Danum, under such a disturbance-recovery regime, can be viewed as having a dynamic equilibrium in functional and structural terms. A second trade-off in shade-tolerance versus drought-tolerance is suggested for among the understorey species. A two-storey (or vertical component) model is proposed where the understorcy-overstorey species' ratio of small stems (currently 2:1) is maintained by a major feedback process. The understorey appears to be an important part of this forest, giving resilience against drought and protecting the overstorey saplings in the long term. This view could be valuable for understanding forest responses to climate change where drought frequency in Borneo is predicted to intensify in the coming decades.

Matched MeSH terms: Rain
The role of extreme events in the impacts of selective tropical forestry on erosion during harvesting and recovery phases at Danum Valley, Sabah

Douglas I, Bidin K, Balamurugan G, Chappell NA, Walsh RP, Greer T, et al.

Philos Trans R Soc Lond B Biol Sci, 1999 Nov 29;354(1391):1749-61.
PMID: 11605619

Ten years' hydrological investigations at Danum have provided strong evidence of the effects of extremes of drought, as in the April 1992 El Niño southern oscillation event, and flood, as in January 1996. The 1.5 km2 undisturbed forest control catchment experienced a complete drying out of the stream for the whole 1.5 km of defined channel above the gauging station in 1992, but concentrated surface flow along every declivity from within a few metres of the catchment divide after the exceptional rains of 19 January 1996. Under these natural conditions, erosion is episodic. Sediment is discharged in pulses caused by storm events, collapse of debris dams and occasional landslips. Disturbance by logging accentuates this irregular regime. In the first few months following disturbance, a wave of sediment is moved by each storm, but over subsequent years, rare events scour sediment from bare areas, gullies and channel deposits. The spatial distribution of sediment sources changes with time after logging, as bare areas on slopes are revegetated and small gullies are filled with debris. Extreme storm events, as in January 1996, cause logging roads to collapse, with landslides leading to surges of sediment into channels, reactivating the pulsed sediment delivery by every storm that happened immediately after logging. These effects are not dampened out with increasing catchment scale. Even the 721 km2 Sungai Segama has a sediment yield regime dominated by extreme events, the sediment yield in that single day on 19 January 1996 exceeding the annual sediment load in several previous years. In a large disturbed catchment, such road failures and logging-activity-induced mass movements increase the mud and silt in floodwaters affecting settlements downstream. Management systems require long-term sediment reduction strategies. This implies careful road design and good water movement regulation and erosion control throughout the logging process.

Matched MeSH terms: Rain
Hydrological investigations of forest disturbance and land cover impacts in South-East Asia: a review

Douglas I

Philos Trans R Soc Lond B Biol Sci, 1999 Nov 29;354(1391):1725-38.
PMID: 11605617

Investigations of land management impacts on hydrology are well developed in South-East Asia, having been greatly extended by national organizations in the last two decades. Regional collaborative efforts, such as the ASEAN-US watershed programme, have helped develop skills and long-running monitoring programmes. Work in different countries is significant for particular aspects: the powerful effects of both cyclones and landsliding in Taiwan, the significance of lahars in Java, of small-scale agriculture in Thailand and plantation establishment in Malaysia. Different aid programmes have contributed specialist knowledge such as British work on reservoir sedimentation, Dutch, Swedish and British work on softwood plantations and US work in hill-tribe agriculture. Much has been achieved through individual university research projects, including PhD and MSc theses. The net result is that for most countries there is now good information on changes in the rainfall-run-off relationship due to forest disturbance or conversion, some information on the impacts on sediment delivery and erosion of hillslopes, but relatively little about the dynamics and magnitude of nutrient losses. Improvements have been made in the ability to model the consequences of forest conversion and of selective logging and exciting prospects exist for the development of better predictions of transfer of water from the hillslopes to the stream channels using techniques such as multilevel modelling. Understanding of the processes involved has advanced through the detailed monitoring made possible at permanent field stations such as that at Danum Valley, Sabah.

Matched MeSH terms: Rain
The ecoclimatology of Danum, Sabah, in the context of the world's rainforest regions, with particular reference to dry periods and their impact

Walsh RP, Newbery DM

Philos Trans R Soc Lond B Biol Sci, 1999 Nov 29;354(1391):1869-83.
PMID: 11605629

Climatic records for Danum for 1985-1998, elsewhere in Sabah since 1879, and long monthly rainfall series from other rainforest locations are used to place the climate, and particularly the dry period climatology, of Danum into a world rainforest context. The magnitude frequency and seasonality of dry periods are shown to vary greatly within the world's rainforest zone. The climate of Danum, which is aseasonal but subject, as in 1997-1998, to occasional drought, is intermediate between less drought-prone north-western Borneo and the more drought-prone east coast. Changes through time in drought magnitude frequency in Sabah and rainforest locations elsewhere in South-East Asia and in the Neotropics are compared. The 1997-1998 ENSO-related drought event in Sabah is placed into a historical context. The effects of drought on tree growth and mortality in the tropics are assessed and a model relating intensity and frequency of drought disturbance to forest structure and composition is discussed.

Matched MeSH terms: Rain
Induction of apoptosis against cancer cell lines by four ascomycetes (endophytes) from Malaysian rainforest

Hazalin NA, Ramasamy K, Lim SM, Cole AL, Majeed AB

Phytomedicine, 2012 May 15;19(7):609-17.
PMID: 22397996 DOI: 10.1016/j.phymed.2012.01.007

Endophytic fungi have been shown to be a promising source of biologically active natural products. In the present study, extracts of four endophytic fungi isolated from plants of the National Park, Pahang were evaluated for their cytotoxic activity and the nature of their active compounds determined. Those extracts exhibiting activity with IC(50) values less than 17 μg/ml against HCT116, MCF-7 and K562 cell lines were shown to induce apoptosis in these cell lines. Molecular analysis, based on sequences of the rDNA internal transcribed spacers ITS1 and ITS4, revealed all four endophytic fungi to be ascomycetes: three sordariomycetes and a dothideomycete. Six known compounds, cytochalasin J, dechlorogriseofulvin, demethylharzianic-acid, griseofulvin, harzianic acid and 2-hexylidene-3-methyl-succinic acid were identified from a rapid dereplication technique for fungal metabolites using an in-house UV library. The results from the present study suggest the potential of endophytic fungi as cytotoxic agents, and there is an indication that the isolates contain bioactive compounds that mainly kill cancer cells by apoptosis.

Matched MeSH terms: Rain
Fulltext Carbon stocks and fluxes in tropical lowland dipterocarp rainforests in Sabah, Malaysian Borneo

Saner P, Loh YY, Ong RC, Hector A

PLoS One, 2012;7(1):e29642.
PMID: 22235319 DOI: 10.1371/journal.pone.0029642

Deforestation in the tropics is an important source of carbon C release to the atmosphere. To provide a sound scientific base for efforts taken to reduce emissions from deforestation and degradation (REDD+) good estimates of C stocks and fluxes are important. We present components of the C balance for selectively logged lowland tropical dipterocarp rainforest in the Malua Forest Reserve of Sabah, Malaysian Borneo. Total organic C in this area was 167.9 Mg C ha⁻¹±3.8 (SD), including: Total aboveground (TAGC: 55%; 91.9 Mg C ha⁻¹±2.9 SEM) and belowground carbon in trees (TBGC: 10%; 16.5 Mg C ha⁻¹±0.5 SEM), deadwood (8%; 13.2 Mg C ha⁻¹±3.5 SEM) and soil organic matter (SOM: 24%; 39.6 Mg C ha⁻¹±0.9 SEM), understory vegetation (3%; 5.1 Mg C ha⁻¹±1.7 SEM), standing litter (<1%; 0.7 Mg C ha⁻¹±0.1 SEM) and fine root biomass (<1%; 0.9 Mg C ha⁻¹±0.1 SEM). Fluxes included litterfall, a proxy for leaf net primary productivity (4.9 Mg C ha⁻¹ yr⁻¹±0.1 SEM), and soil respiration, a measure for heterotrophic ecosystem respiration (28.6 Mg C ha⁻¹ yr⁻¹±1.2 SEM). The missing estimates necessary to close the C balance are wood net primary productivity and autotrophic respiration.Twenty-two years after logging TAGC stocks were 28% lower compared to unlogged forest (128 Mg C ha⁻¹±13.4 SEM); a combined weighted average mean reduction due to selective logging of -57.8 Mg C ha⁻¹ (with 95% CI -75.5 to -40.2). Based on the findings we conclude that selective logging decreased the dipterocarp stock by 55-66%. Silvicultural treatments may have the potential to accelerate the recovery of dipterocarp C stocks to pre-logging levels.

Matched MeSH terms: Rain*
Fulltext Birdsong Denoising Using Wavelets

Priyadarshani N, Marsland S, Castro I, Punchihewa A

PLoS One, 2016;11(1):e0146790.
PMID: 26812391 DOI: 10.1371/journal.pone.0146790

Automatic recording of birdsong is becoming the preferred way to monitor and quantify bird populations worldwide. Programmable recorders allow recordings to be obtained at all times of day and year for extended periods of time. Consequently, there is a critical need for robust automated birdsong recognition. One prominent obstacle to achieving this is low signal to noise ratio in unattended recordings. Field recordings are often very noisy: birdsong is only one component in a recording, which also includes noise from the environment (such as wind and rain), other animals (including insects), and human-related activities, as well as noise from the recorder itself. We describe a method of denoising using a combination of the wavelet packet decomposition and band-pass or low-pass filtering, and present experiments that demonstrate an order of magnitude improvement in noise reduction over natural noisy bird recordings.

Matched MeSH terms: Rain
Fulltext Wet season nitrogen export from a residential stormwater pond

Jani J, Lusk MG, Yang YY, Toor GS

PLoS One, 2020;15(4):e0230908.
PMID: 32236119 DOI: 10.1371/journal.pone.0230908

Stormwater runoff is recognized as a cause of water quality degradation because it may carry nitrogen (N) and other pollutants to aquatic ecosystems. Stormwater ponds are a stormwater control measure often used to manage stormwater runoff by holding a permanent pool of water, which reduces the peak flow, magnitude of runoff volume, and concentrations of nutrients and pollutants. We instrumented the outlet of a stormwater pond in an urban residential neighbourhood in Florida, United States to (1) investigate the concentration and composition of N forms during the summer rainy season (May to September 2016), and (2) determine the bioavailability of organic N in the stormwater pond with a bioassay experiment. A total of 144 outflow water samples over 13 storm events were collected at the outlet of the stormwater pond that collects runoff from the residential catchment. Samples were analysed for various inorganic N [ammonium (NH4-N), nitrate (NO3-N)], and organic N forms [dissolved organic nitrogen (DON), and particulate organic nitrogen (PON)]. Flow-weighted mean concentration of total N (TN) in pond outflow for all collected storm events was 1.3±1.42 mg L-1, with DON as the dominant form (78%), followed by PON and NO3-N (each at 8%), and NH4-N (6%). In the bioassay experiment, organic N (DON+PON) was significantly decreased by 25-28% after 5 days of incubation, suggesting that a portion of the DON carried from the pond outflow to receiving water bodies may be bioavailable. These results suggest that efforts to mitigate stormwater N outflows from urban ponds should incorporate both inorganic and organic N in management plans.

Matched MeSH terms: Rain
Fulltext The link between climate change, food security and fertility: The case of Bangladesh

Chen M, Atiqul Haq SM, Ahmed KJ, Hussain AHMB, Ahmed MNQ

PLoS One, 2021;16(10):e0258196.
PMID: 34673797 DOI: 10.1371/journal.pone.0258196

Climate change is likely to worsen the food security situation through its impact on food production, which may indirectly affect fertility behaviour. This study examines the direct and indirect effects of climate change (e.g., temperature and precipitation) via the production of major crops, as well as their short- and long-term effects on the total fertility rate (TFR) in Bangladesh. We used structural equation modelling (SEM) to perform path analysis and distinguish the direct influence of climate change on fertility and its indirect influence on fertility through food security. We also applied the error correction model (ECM) to analyze the time-series data on temperature and precipitation, crop production and fertility rate of Bangladesh from 1966 to 2015. The results show that maximum temperature has a direct effect and indirect negative effect-via crop production-on TFR, while crop production has a direct positive effect and indirect negative effect-via infant mortality-on TFR. In the short term, TFR responds negatively to the maximum temperature but positively in the long term. The effect of rainfall on TFR is found to be direct, positive, but mainly short-term. Although indicators of economic development play an important part in the fertility decline in Bangladesh, some climate change parameters and crop production are non-negligible factors.

Matched MeSH terms: Rain
Fulltext Composition of nitrogen in urban residential stormwater runoff: Concentrations, loads, and source characterization of nitrate and organic nitrogen

Jani J, Yang YY, Lusk MG, Toor GS

PLoS One, 2020;15(2):e0229715.
PMID: 32109256 DOI: 10.1371/journal.pone.0229715

Stormwater runoff is a leading cause of nitrogen (N) transport to water bodies and hence one means of water quality deterioration. Stormwater runoff was monitored in an urban residential catchment (drainage area: 3.89 hectares) in Florida, United States to investigate the concentrations, forms, and sources of N. Runoff samples were collected over 22 storm events (May to September 2016) at the end of a stormwater pipe that delivers runoff from the catchment to the stormwater pond. Various N forms such as ammonium (NH4-N), nitrate (NOx-N), dissolved organic nitrogen (DON), and particulate organic nitrogen (PON) were determined and isotopic characterization tools were used to infer sources of NO3-N and PON in collected runoff samples. The DON was the dominant N form in runoff (47%) followed by PON (22%), NOx-N (17%), and NH4-N (14%). Three N forms (NOx-N, NH4-N, and PON) were positively correlated with total rainfall and antecedent dry period, suggesting longer dry periods and higher rainfall amounts are significant drivers for transport of these N forms. Whereas DON was positively correlated to only rainfall intensity indicating that higher intensity rain may flush out DON from soils and cause leaching of DON from particulates present in the residential catchment. We discovered, using stable isotopes of NO3-, a shifting pattern of NO3- sources from atmospheric deposition to inorganic N fertilizers in events with higher and longer duration of rainfall. The stable isotopes of PON confirmed that plant material (oak detritus, grass clippings) were the primary sources of PON in stormwater runoff. Our results demonstrate that practices targeting both inorganic and organic N are needed to control N transport from residential catchments to receiving waters.

Matched MeSH terms: Rain

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