The 2004 Banda Aceh earthquake and ensuing Andaman mega tsunami that killed a quarter million people worldwide is a wake-up call to many. Active research was initiated in Universiti Sains Malaysia (USM) immediately after the infamous event with the aims to help develop human capacity and resources, and to mitigate any future earthquake and tsunami. The Disaster Research Nexus (DRN) was formed recently within the School of Civil Engineering, USM, to facilitate active collaborative research on earthquakes and tsunamis, as well as on other natural disasters, such as landslides. This paper begins with an introduction to DRN. This is followed by a description of some research achievements undertaken by DRN staff. A concise exposition on the tsunami simulation model TUNA developed by the authors and its application to the 2004 Andaman tsunami are given to illustrate the capability of TUNA. The role of mangrove in reducing the impact of tsunami is then modelled. Tsunami may inundate coastal plain with large quantity of saline water, changing the salinity regimes in the soil and inducing vegetative succession changes. A model called MANHAM was developed to simulate the salinity changes and its associated vegetative evolution to assist in the rehabilitation of vegetation destroyed by tsunami. Meanwhile, an earthquake risk analysis for the Upper Pandas Dam in Sabah is then presented, and this is followed by a model estimation of tsunami forces on the coastal structures. The main objective of this paper is to reach out to research scientists and onsite risk reduction professionals to collaborate towards the development of a vibrant research culture to face future natural disasters such as earthquakes and tsunamis. It is hoped that DRN will move forward to further enhance active collaborations with other research and operational institutions worldwide towards developing earthquake and tsunami resilient communities.
Respiratory metabolism of the larvae of Malaysian horseshoe crab Tachypleus gigas (Müller) was studied under different salinities, pH, and temperature. The trend in oxygen consumption was uniform at all salinities, ranging from 10-40 ppt, indicating insignificant influence on the oxygen consumption by the larvae. Similarly, the correlation coefficient values showed that the relationship between oxygen consumption and salinity was not significant (P > 0.05; r = 0.245). During the first three hours, the oxygen consumption was 8.89, 10.72, 17.4, and 12.06% at 10, 20, 30, and 40 ppt salinities, respectively. Meanwhile, the maximum oxygen consumption was recorded after 12 hrs, i.e. at salinity 20 ppt. A sudden drop in oxygen consumption was recorded during 3-6 hours of the experiment. This was followed by a gradual increase in the consumption of oxygen up to 12 hours of experiment. A similar trend in the oxygen consumption was observed in different pH levels, ranging from 5 to 9. At pH 6 and 9, during the first six hour, a moderate consumption of oxygen was observed. However, at pH 6, 7 and 8, the rates of oxygen consumption were found to be relatively greater after six hours, indicating unfavourable conditions. The data were statistically tested and it was found that a high degree of correlations existed between pH and oxygen consumption (r = 0.97). The analysis of covariance showed a significant relationship between oxygen consumption and pH (P < 0.05). Meanwhile, minimal variation in oxygen consumption was recorded between 30 and 40oC, with a
gradual decrease in dissolved oxygen concentration up to 12 hours of experimental time. At 50oC,
almost all dissolved oxygen was consumed by the larvae. The rate of oxygen consumption between
30 and 40oC was low during the first 9 hours of the experiment but it was significantly increased at later hours. A sudden increase in the oxygen consumption was recorded at 50oC, suggesting that it
might be the most unfavourable temperature condition. Meanwhile, a significant relationship was
observed between temperature and oxygen consumption (P < 0.05; r = 0.98).
Surface water samples were collected from 16 Lakes in and around Miri City to assess the electrochemical parameters includes pH, Electrical conductivity (EC), Total dissolved solid (TDS), redox potential (Eh), resistivity and salinity. Sampling locations for monitoring were selected in the vicinity of major roads, industries, settlements and agricultural region. Interpretation of data shows that the surface water in the central region of the study area is polluted by various anthropogenic activities, while in the southern part is within the limits of guideline values. This kind of investigation is essential in the study area to save the resources for future perspective. Further detailed studies are also needed to get a clear picture of the surface water quality in Miri city and for future sustainable management of this resource.
A study on the distribution of Recent Ostracoda in offshore sediment was carried out around the South China Sea. A total of 30 sediment samples were taken from the sampling stations between latitude 1°48’ and 7°25’N and longitude 102°09’ and 105°16’E. From this study, 79 species of ostracods belonging to 16 families and 44 genera were identified. The dominant species was Foveoleberis cypraeoides with 937 individuals obtained. There were 13 to 43 species in total. Diversity Index, H(s), was in the range of 2.1 to 3.3, whereas the dominance values were between 4.4 and 14.7%. Several environmental parameters were measured including depth, temperature and salinity. The range values for each of these parameters are 13-72 m, 25.24-30.06o C and 27.74-34.91 ppt, respectively. The sediment texture in this study area can be categorized as sand, sandy mud, clayey mud, silty mud, silty clay, clayey sand, clayey silt and silty sand. The observations revealed that abundance and diversity of ostracod appeared to be principally controlled by depth. Two faunal assemblages were identified in terms of faunal composition, namely, shallow water (Hemikrithe orientalis, Neomonoceratina iniqua, Stigmatocythere indica, Cytherelloidea leroyi and Neocytheretta snellii) and deep water (Paracypris sp., Alataconcha pterogona, Bythocytheropteron alatum, Keijella paucipunctata and Actinocythereis scutigera). A comparative analysis showed a high degree resemblance between the study area and south-eastern Malay Peninsula (the South China Sea).
The mangrove forest ecosystem acts as a shield against the destructive tidal waves, preventing the coastal areas and other properties nearby from severe damages; this protective function certainly deserves attention from researchers to undertake further investigation and exploration. Mangrove forest provides different goods and services. The unique environmental factors affecting the growth of mangrove forest are as follows: distance from the sea or the estuary bank, frequency and duration of tidal inundation, salinity, and composition of the soil. These crucial factors may under certain circumstances turn into obstacles in accessing and managing the mangrove forest. One effective method to circumvent this shortcoming is by using remotely sensed imagery data, which offers a more accurate way of measuring the ecosystem and a more efficient tool of managing the mangrove forest. This paper attempts to review and discuss the usage of remotely sensed imagery data in mangrove forest management, and how they will improve the accuracy and precision in measuring the mangrove forest ecosystem. All types of measurements related to the mangrove forest ecosystem, such as detection of land cover changes, species distribution mapping and disaster observation should take advantage of the advanced technology; for example, adopting the digital image processing algorithm coupled with high-resolution image available nowadays. Thus, remote sensing is a highly efficient, low-cost and time-saving technique for mangrove forest measurement. The application of this technique will further add value to the mangrove forest and enhance its in-situ conservation and protection programmes in combating the effects of the rising sea level due to climate change.
BACKGROUND AND OBJECTIVE: Mud crab from the genus Scylla are considered as one of the most demanded seafood items nowadays as their flesh has high quality, tasty and higher growth rate thus support and boosted expansion in aquaculture sector especially in Malaysia. Present study was designed to focus on the effect of water salinity on the ovarian maturation of orange mud crab, Scylla olivacea based on morphological characteristics.
METHODOLOGY: Samples were collected from Setiu wetlands, Terengganu, Malaysia from July-September, 2015. Ovarian maturation of S. olivacea was classified into four stages based on previous study which were: Immature (Stage 1), early mature (Stage 2), late mature (Stage 3) and fully mature (Stage 4).
RESULTS: Morphologically as the ovary develop the colouration start to change from translucent or whitish in colour and sometimes creamy to pale yellow, follow by light orange and lastly reddish orange. Stage 1 ovary was translucent and whitish in colour, stage 2 ovary was pale yellow in colour, stage 3 was light orange and stage 4 ovary was reddish orange in colour. Gonad Somatic Index (GSI) of S. olivacea remained low at stage 1 and 2 and began to increase started at stage 3. This present study involved three different salinities treatments, which treatment 1 (10 ppt), treatment 2 (20 ppt) and treatment 3 (30 ppt). Treatment 2 produce the highest number of stage 4 ovarian maturation based on colouration and the highest GSI recorded, follow by treatment 1 and lastly treatment 3.
CONCLUSION: This present study proved that salinity does affected the ovarian maturation of S. olivacea in captivity and provides important information regarding the effect of water salinity on ovarian maturation for further studies on reproductive biology of this species.
Fusarium genus comprises important saprophytic and phytopathogenic fungi and is widespread in nature. The present study reports the occurrence of Fusarium spp. in soils from two mangrove forests in northern Peninsular Malaysia and analyzed physico-chemical properties of the mangrove soil. Based on TEF-1α sequences, nine Fusarium species were identified: Fusarium solani species complex (FSSC) (n = 77), Fusarium verticillioides (n = 20), Fusarium incarnatum (n = 10), Fusarium proliferatum (n = 7), Fusarium lateritium (n = 4), Fusarium oxysporum (n = 3), Fusarium rigidiuscula (n = 2), Fusarium chlamydosporum (n = 1), and Fusarium camptoceras (n = 1); FSSC isolates were the most prevalent. Phylogenetic analysis of the combined TEF-1α and ITS sequences revealed diverse phylogenetic affinities among the FSSC isolates and potentially new phylogenetic clades of FSSC. Soil analysis showed varied carbon content, pH, soil moisture, and salinity, but not nitrogen content, between sampling locations. Regardless of the physico-chemical properties, various Fusarium species were recovered from the mangrove soils. These were likely saprophytes; however, some were well-known plant pathogens and opportunistic human pathogens. Thus, mangrove soils might serve as inoculum sources for plant and human pathogenic Fusarium species. The present study demonstrates the occurrence of various Fusarium species in the extreme environment of mangrove soil, thereby contributing to the knowledge on species diversity in Fusarium.
Pressure-retarded osmosis (PRO) has recently received attention because of its ability to generate power via an osmotic pressure gradient between two solutions with different salinities: high- and low-salinity water sources. In this study, PRO performance, using the two pilot-scale PRO membrane modules with different configurations-five-inch cellulose triacetate hollow-fiber membrane module (CTA-HF) and eight-inch polyamide spiral-wound membrane modules (PA-SW)-was evaluated by changing the draw solution (DS) concentration, applied hydrostatic pressure difference, and the flow rates of DS and feed solution (FS), to obtain the optimum operating conditions in PRO configuration. The maximum power density per unit membrane area of PA-SW at 0.6 M NaCl was 1.40 W/m2 and 2.03-fold higher than that of CTA-HF, due to the higher water permeability coefficient of PA-SW. In contrast, the maximum power density per unit volume of CTA-SW at 0.6 M NaCl was 4.67 kW/m3 and 6.87-fold higher than that of PA-SW. The value of CTA-HF increased to 13.61 kW/m3 at 1.2 M NaCl and was 12.0-fold higher than that of PA-SW because of the higher packing density of CTA-HF.
The molecular composition and distribution of sterols were investigated in the East China Sea to identify the origins of suspended particulate matter (SPM) in offshore waters influenced by Changjiang River Diluted Water (CRDW). Total sterol concentrations ranged from 3200 to 31,900pgL(-1) and 663 to 5690pgL(-1) in the particulate and dissolved phases, respectively. Marine sterols dominated representing 71% and 66% in the particulate and dissolved phases, respectively. Typical sewage markers, such as coprostanol, were usually absent at ~250km offshore. However, sterols from allochthonous terrestrial plants were still detected at these sites. A negative relationship was observed between salinity and concentrations of terrestrial sterols in SPM, suggesting that significant amounts of terrestrial particulate matter traveled long distance offshore in the East China Sea, and the Changjiang River Diluted Water (CRDW) was an effective carrier of land-derived particulate organic matter to the offshore East China Sea.
The study presents a baseline variability and climatology study of measured hydrodynamic, water properties and some water quality parameters of West Johor Strait, Singapore at hourly-to-seasonal scales to uncover their dependency and correlation to one or more drivers. The considered parameters include, but not limited by sea surface elevation, current magnitude and direction, solar radiation and air temperature, water temperature, salinity, chlorophyll-a and turbidity. FFT (Fast Fourier Transform) analysis is carried out for the parameters to delineate relative effect of tidal and weather drivers. The group and individual correlations between the parameters are obtained by principal component analysis (PCA) and cross-correlation (CC) technique, respectively. The CC technique also identifies the dependency and time lag between driving natural forces and dependent water property and water quality parameters. The temporal variability and climatology of the driving forces and the dependent parameters are established at the hourly, daily, fortnightly and seasonal scales.
Tidal variation in tropical coastal water plays an important role on physicochemical characteristics and nutrients concentration. Baseline measurements were made for nutrients concentration and physicochemical properties of coastal water, Port Dickson, Malaysia. pH, temperature, oxidation reduction potential, salinity and electrical conductivity have high values at high tides. Principal Components Analysis (PCA) was used to understand spatial variation of nutrients and physicochemical pattern of Port Dickson coastal water at high and low tide. Four principal components of PCA were extracted at low and high tides. Positively loaded nutrients with negative loadings of DO, pH and ORP in PCA outputs indicated nutrients contribution related with pollution sources. This study output will be a baseline frame for future studies in Port Dickson involving water and sediment samples. Water and sediment samples of future monitoring studies in Port Dickson coastal water will help in understanding of coastal water chemistry and pollution sources.
Particulate phosphorus was the dominant phosphorus species and accounted for 72 ± 5% of total phosphorus in coastal habitats, 63 ± 4% in estuaries, 58 ± 6% in lakes and 80 ± 7% in aquaculture farms whereas dissolved inorganic phosphorus (DIP) and dissolved organic phosphorus (DOP) were minor components. Correlation analyses (DIP vs Chl a; R2 = 0.407, df = 31, p
To assess the effects of environmental changes on phytoplankton community structure in a mangrove ecosystem, phytoplankton distribution in Matang mangrove, Malaysia was examined. Phytoplankton and water samples, and in situ environmental parameters from three estuaries with differing levels of disturbance were examined monthly for one year. Two species, Cyclotella choctawhatcheeana and Skeletonema costatum, were dominant in the least disturbed and moderately disturbed areas, respectively. Skeletonema costatum was also the most dominant in the most disturbed area. Significant differences in phytoplankton density and biodiversity between the least and most disturbed areas were also observed. Principle component 1 (salinity, conductivity, total solids/water transparency and nitrogenous compounds) and PC2 (dissolved oxygen, pH and temperature) explained 60.4% of the total variance. This study illustrated that changes in phytoplankton community structure in Matang mangrove estuaries were significantly correlated with environmental parameters which were in turn influenced by ecosystem disturbance levels as well as seasonal changes.
Salinivibrio proteolyticus M318, a halophilic bacterium isolated from fermented shrimp paste, is able to produce polyhydroxyalkanoate (PHA) from different carbon sources. In this study, we report the whole-genome sequence of strain M138, which comprises 2 separated chromosomes and 2 plasmids, and the complete genome contains 3,605,935 bp with an average GC content of 49.9%. The genome of strain M318 contains 3341 genes, 98 tRNA genes, and 28 rRNA genes. The 16S rRNA gene sequence and average nucleotide identity analysis associated with morphological and biochemical tests showed that this strain has high homology to the reference strain Salinivibrio proteolyticus DSM 8285. The genes encoding key enzymes for PHA and ectoine synthesis were identified from the bacterial genome. In addition, the TeaABC transporter responsible for ectoine uptake from the environment and the operon doeABXCD responsible for the degradation of ectoine were also detected. Strain M318 was able to produce poly(3-hydroxybutyrate) [P(3HB)] from different carbon sources such as glycerol, maltose, glucose, fructose, and starch. The ability to produce ectoines at different NaCl concentrations was investigated. High ectoine content of 26.2% of cell dry weight was obtained by this strain at 18% NaCl. This report provides genetic information regarding adaptive mechanisms of strain M318 to stress conditions, as well as new knowledge to facilitate the application of this strain as a bacterial cell factory for the production of PHA and ectoine.
Salinity can induce Mesembryanthemum crystallinum to shift its photosynthesis from C3 to crassulacean acid metabolism (CAM), leading to enhanced plant water use efficiency. Studying how M. crystallinum changes its carbon fixation pathways is important for potential translation into crops and enhancing crop resilience. In this study, we examined proteomic changes in guard cells and mesophyll cells in the course of the C3 to CAM transition. We collected enriched guard cells and mesophyll cells during a short period of transition. A total of 1153 proteins were identified and quantified in the two cell-types. During the transition, proteins in the guard cells and mesophyll cells exhibited differential changes. For example, we observed nocturnal carbon fixation in mesophyll cells and proteins involved in cell growth in the two cell-types. Proteins involved in osmotic adjustment, ion transport, energy metabolism and light response may play important roles in the C3 to CAM transition. Real-time PCR experiments were conducted to determine potential correlations between transcript and protein levels. These results have highlighted potential molecular mechanisms underlying the C3 to CAM transition of guard cells and mesophyll cells of the important facultative CAM plant. BIOLOGICAL SIGNIFICANCE: Fresh water resource for agricultural food production is a global challenge. Nature has evolved crassulacean acid metabolism (CAM) plants with enhanced water use efficiency. Using single cell-type proteomics, this study revealed molecular changes taking place in guard cells and mesophyll cells during the shift of ice plant photosynthesis from C3 to CAM. The results have provided important insights into the CAM transition and may facilitate effort toward enhancing crop resilience for global food security.
The small genome size of rice relative to wheat and barley, together with its salt sensitivity, make it an ideal candidate for studies of salt stress response. Transcriptomics has emerged as a powerful technique to study salinity responses in many crop species. By identifying a large number of differentially expressed genes (DEGs) simultaneously after the stress induction, it can provide crucial insight into the immediate responses towards the stressor. In this study, a Malaysian salt-tolerant indigenous rice variety named Bajong and one commercial rice variety named MR219 were investigated for their performance in plant growth and ion accumulation properties after salt stress treatment. Bajong was further investigated for the changes in leaf's transcriptome after 6 h of stress treatment using 100 mM NaCl. Based on the results obtained, Bajong is found to be significantly more salt tolerant than MR219, showing better growth and a lower sodium ion accumulation after the stress treatment. Additionally, Bajong was analysed by transcriptomic sequencing, generating a total of 130 millions reads. The reads were assembled into de novo transcriptome and each transcript was annotated using several pre-existing databases. The transcriptomes of control and salt-stressed samples were then compared, leading to the discovery of 4096 DEGs. Based on the functional annotation results obtained, the enrichment factor of each functional group in DEGs was calculated in relation to the total reads obtained. It was found that the group with the highest gene modulation was involved in the secondary metabolite biosynthesis of plants, with approximately 2.5% increase in relation to the total reads obtained. This suggests an extensive transcriptional reprogramming of the secondary metabolic pathways after stress induction, which could be directly responsible for the salt tolerance capability of Bajong.
Monodehydroascorbate reductase (MDHAR), an important enzyme of the ascorbate-glutathione cycle, is involved in salt tolerance of plants through scavenging of reactive oxygen species (ROS). In this study, a cDNA encoding MDHAR from the mangrove plant Acanthus ebracteatus was introduced into rice to examine its role in salt tolerance. Three stable transgenic lines (MT22, MT24 and MT25) overexpressing AeMDHAR were selected in vitro using hygromycin and confirmed by PCR, quantitative reverse-transcription (qRT) PCR and enzyme assay. The transgenic line MT24 was predicted to possess a single copy of the transgene while the other two transgenic lines were predicted to have multiple transgene integrations. The AeMDHAR transcripts were detected only in transgenic rice lines but not in untransformed rice. The abundance of AeMDHAR transcripts in transgenic lines MT22 and MT25 was approximately 2.75 times the amount found in MT24. The transgenic rice lines overexpressing AeMDHAR showed a significant increase in MDHAR enzyme activity compared to untransformed plants under both NaCl and control conditions. All transgenic lines showed better yield attributes such as a higher tiller number and increased 1000-grain weight compared to non-transgenics. They also showed tolerance to salt at germination and seedling stages. The transgenic line MT24, which harbors a single copy of AeMDHAR, displayed a lower rate of sterility, a higher number of tillers and longer panicle compared to untransformed plants when subjected to salt stress.
Coolia is a widespread and ecologically important genus of benthic marine dinoflagellates found in tropical regions. Historically, there has been taxonomic confusion about the taxonomy and toxicity of this group. The goal of this study was to resolve morphological questions concerning Coolia tropicalis and determine the taxonomic identity of the Australian Coolia isolate which has been reported to produce cooliatoxins. To accomplish this, the morphology of tropical strains from Belize (the type locality of C. tropicalis), Malaysia, Indonesia, and Australia were examined and compared to published reports. The morphological analysis showed that C. tropicalis differs from the original description in that it has a slightly larger size (35-47 μm long by 30-45 μm wide versus 23-40 μm long by 25-39 μm wide), and the shape of fourth apical plate, and the length of Po plate (7.4-12 μm versus 7 μm). Based on both morphology and phylogenetic analysis using LSU D1- D3 rDNA sequences, the clones of C. tropicalis from Malaysia, Indonesia, and Belize were found to form a monophyletic clade within the genus. The strain producing cooliatoxin was found to be C. tropicalis, not Coolia monotis as originally assumed. To explore the factors influencing the growth of Coolia species, the growth rates of C. tropicalis and Coolia malayensis were determined at different temperatures and salinities. Both species tolerated a wide range of temperatures, but cannot survive at temperatures <20°C or >35°C. C. monotis, the dominant species reported in the literature, probably does not produce toxins.
Biochar (BC) has attracted much attention owing to its superior sorption capacity towards ionized organic contaminants. However, the mechanism of ionized organics sorption occurring within BC containing large amounts of minerals is still controversial. In this study, we demonstrate the physicochemical structure of high-salinity microalgal residue derived biochar (HSBC) and elucidate the corresponding sorption mechanisms for four ionized dyes along with determining the crucial role of involved minerals. The results indicate that sodium and calcium minerals mainly exist within HSBCs, and the pyrolysis temperature can dramatically regulate the phases and interfacial property of both carbon matrix and minerals. As a result, the HSBC shows a higher sorption potential, benefiting from abundant functional groups and high content of inorganic minerals. Using theoretical calculations, the activities of electron donor-acceptor interaction between HSBCs and different dyes are clearly illustrated, thereby identifying the critical role of Ca2+ in enhancing the removal of ionized dyes in HSBCs. In addition, Ca-containing minerals facilitate the sorption of ionized dyes in HSBCs by forming ternary complexes through metal-bridging mechanism. These results of mineral-induced dye sorption mechanisms help to better understand the sorption of ionized organics in high-salt containing BC and provide a new disposal strategy for hazardous microalgal residue, as well as provide a breakthrough in making the remediation of ionized organic contaminated microalgal residue derived absorbent feasible.
The high prevalence (80-100%) of the marine leech Zeylanicobdella arugamensis (De Silva) on cage-cultured Asian sea bass Lates calcarifer (Bloch) led us to investigate the percentage of juvenile leeches hatched from deposited cocoons, survival of juvenile and adult marine leeches at different salinity and temperature. The results showed that the hatching percentage of juvenile leeches was highest at salinity of 30 ppt (32.5 ± 2.8%) followed by 20 ppt (18.0 ± 4.3%) and 10 ppt (12.1 ± 1.4%), respectively. It was found that the adult and juvenile leeches could live up to an average range of 4-7 days at salinity ranging from 10 to 40 ppt. The juvenile leeches were able to hatch at temperature ranging from 25 to 35 °C but unable to hatch at 40 °C. The survival period of adult and juvenile leeches ranged from 11 to 16 days at 25 °C, which was comparatively longer than 5-13 days and 10 h--5 days at 27-30 °C and 35-40 °C, respectively. The study provided the information on the physical parameters of salinity and temperature which are most optimal for the marine leech Z. arugamensis to propagate.