Browse publications by year: 2014

  1. Degenhardt L, Mathers BM, Wirtz AL, Wolfe D, Kamarulzaman A, Carrieri MP, et al.
    Int J Drug Policy, 2014 Jan;25(1):53-60.
    PMID: 24113623 DOI: 10.1016/j.drugpo.2013.08.004
    In 2010 the international HIV/AIDS community called on countries to take action to prevent HIV transmission among people who inject drugs (PWID). To set a baseline we proposed an "accountability matrix", focusing upon six countries accounting for half of the global population of PWID: China, Malaysia, Russia, Ukraine, Vietnam and the USA. Two years on, we review progress.
    MeSH terms: China; Health Policy*; Humans; Malaysia; Russia; Ukraine; United States; Vietnam; HIV Infections/complications; HIV Infections/drug therapy*; HIV Infections/prevention & control*; Substance Abuse, Intravenous/complications; Substance Abuse, Intravenous/drug therapy*; Needle-Exchange Programs/trends; Anti-Retroviral Agents/therapeutic use; Opiate Substitution Treatment/trends
  2. Hadibarata T, Kristanti RA
    Biodegradation, 2014 Jun;25(3):373-82.
    PMID: 24114532 DOI: 10.1007/s10532-013-9666-x
    A diverse surfactant, including the nonionic Tween 80 and Brij 30, the anionic sodium dodecyl sulphate, the cationic surfactant Tetradecyltrimethylammonium bromide, and biosurfactant Rhamnolipid were investigated under fluorine-enriched medium by Armilaria sp. F022. The cultures were performed at 25 °C in malt extract medium containing 1 % of surfactant and 5 mg/L of fluorene. The results showed among the tested surfactants, Tween-80 harvested the highest cell density and obtained the maximum specific growth rate. This due Tween-80 provide a suitable carbon source for fungi. Fluorane was also successfully eliminated (>95 %) from the cultures within 30 days in all flasks. During the experiment, laccase production was the highest among other enzymes and Armillaria sp. F022-enriched culture containing Non-ionic Tween 80 showed a significant result for laccase activity (1,945 U/L). The increased enzyme activity was resulted by the increased biodegradation activity as results of the addition of suitable surfactants. The biotransformation of fluorene was accelerated by Tween 80 at the concentration level of 10 mg/L. Fluorene was initially oxidized at C-2,3 positions resulting 9-fluorenone. Through oxidative decarboxylation, 9-fluorenone subjected to meta-cleavage to form salicylic acid. One metabolite detected in the end of experiment, was identified as catechol. Armillaria sp. F022 evidently posses efficient, high effective degrader and potential for further application on the enhanced bioremediation technologies for treating fluorene-contaminated soil.
    MeSH terms: Biodegradation, Environmental; Biotransformation; Catechols/metabolism; Fluorenes/metabolism*; Fungal Proteins/biosynthesis; Glycolipids/pharmacology; Soil Pollutants/metabolism*; Surface-Active Agents/pharmacology; Salicylic Acid/metabolism; Laccase/biosynthesis; Armillaria/drug effects; Armillaria/metabolism*
  3. Siti-Zahrah A, Zamri-Saad M, Firdaus-Nawi M, Hazreen-Nita MK, Nur-Nazifah M
    J Fish Dis, 2014 Nov;37(11):981-3.
    PMID: 24117659 DOI: 10.1111/jfd.12185
    MeSH terms: Animals; Catfishes/virology*; Fish Diseases/epidemiology*; Fish Diseases/pathology; Fish Diseases/virology; Fisheries; Herpesviridae Infections/epidemiology; Herpesviridae Infections/pathology; Herpesviridae Infections/veterinary*; Herpesviridae Infections/virology; Kidney/pathology; Kidney/virology; Malaysia/epidemiology; Spleen/pathology; Spleen/virology; Prevalence; Ictalurivirus/isolation & purification; Ictalurivirus/physiology*
  4. Abdulrazzak SS, Sulaiman E, Atiya BK, Jamaludin M
    Aust Endod J, 2014 Aug;40(2):81-6.
    PMID: 24118334 DOI: 10.1111/aej.12042
    The purpose of this study was to evaluate the combined effect of ferrule height and post length on fracture resistance and failure mode of endodontically treated teeth restored with glass fibre posts, composite resin cores and crowns. Ninety human maxillary central incisors were endodontically treated and divided into three groups (n = 30) according to the ferrule heights: 4, 2 and 0 mm, respectively. Post spaces in each group were prepared at 2/3, 1/2 and 1/3 of the root length (n = 10). The specimens were received fibre posts, composite resin core build up and cast metal crowns. After thermocycling, compressive static load was applied at an angle of 135° to the crowns. Two-way analysis of variance showed significant differences in the failure load in the ferrule height groups, no significant differences in post length groups and no significant interaction between ferrule heights and post lengths. More restorable failure modes were observed.
  5. Li Lee M, Chung I, Yee Fung S, Kanthimathi MS, Hong Tan N
    Basic Clin Pharmacol Toxicol, 2014 Apr;114(4):336-43.
    PMID: 24118879 DOI: 10.1111/bcpt.12155
    King cobra (Ophiophagus hannah) venom L-amino acid oxidase (LAAO), a heat-stable enzyme, is an extremely potent antiproliferative agent against cancer cells when compared with LAAO isolated from other snake venoms. King cobra venom LAAO was shown to exhibit very strong antiproliferative activities against MCF-7 (human breast adenocarcinoma) and A549 (human lung adenocarcinoma) cells, with an IC50 value of 0.04±0.00 and 0.05±0.00 μg/mL, respectively, after 72-hr treatment. In comparison, its cytotoxicity was about 3-4 times lower when tested against human non-tumourigenic breast (184B5) and lung (NL 20) cells, suggesting selective antitumour activity. Furthermore, its potency in MCF-7 and A549 cell lines was greater than the effects of doxorubicin, a clinically established cancer chemotherapeutic agent, which showed an IC50 value of 0.18±0.03 and 0.63±0.21 μg/mL, respectively, against the two cell lines. The selective cytotoxic action of the LAAO was confirmed by phycoerythrin (PE) annexin V/7-amino-actinomycin (AAD) apoptotic assay, in which a significant increase in apoptotic cells was observed in LAAO-treated tumour cells than in their non-tumourigenic counterparts. The ability of LAAO to induce apoptosis in tumour cells was further demonstrated using caspase-3/7 and DNA fragmentation assays. We also determined that this enzyme may target oxidative stress in its killing of tumour cells, as its cytotoxicity was significantly reduced in the presence of catalase (a H2O2 scavenger). In view of its heat stability and selective and potent cytotoxic action on cancer cells, king cobra venom LAAO can be potentially developed for treating solid tumours.
    MeSH terms: Animals; Cell Survival/drug effects; Elapid Venoms/enzymology*; Humans; Hydrogen Peroxide/metabolism; Apoptosis/drug effects; Elapidae; Cell Proliferation/drug effects*; L-Amino Acid Oxidase/pharmacology*; Caspase 3/genetics; Caspase 3/metabolism; Caspase 7/genetics; Caspase 7/metabolism; DNA Fragmentation/drug effects; MCF-7 Cells
  6. Acharya UR, Faust O, Sree V, Swapna G, Martis RJ, Kadri NA, et al.
    Comput Methods Programs Biomed, 2014;113(1):55-68.
    PMID: 24119391 DOI: 10.1016/j.cmpb.2013.08.017
    Coronary artery disease (CAD) is one of the dangerous cardiac disease, often may lead to sudden cardiac death. It is difficult to diagnose CAD by manual inspection of electrocardiogram (ECG) signals. To automate this detection task, in this study, we extracted the heart rate (HR) from the ECG signals and used them as base signal for further analysis. We then analyzed the HR signals of both normal and CAD subjects using (i) time domain, (ii) frequency domain and (iii) nonlinear techniques. The following are the nonlinear methods that were used in this work: Poincare plots, Recurrence Quantification Analysis (RQA) parameters, Shannon entropy, Approximate Entropy (ApEn), Sample Entropy (SampEn), Higher Order Spectra (HOS) methods, Detrended Fluctuation Analysis (DFA), Empirical Mode Decomposition (EMD), Cumulants, and Correlation Dimension. As a result of the analysis, we present unique recurrence, Poincare and HOS plots for normal and CAD subjects. We have also observed significant variations in the range of these features with respect to normal and CAD classes, and have presented the same in this paper. We found that the RQA parameters were higher for CAD subjects indicating more rhythm. Since the activity of CAD subjects is less, similar signal patterns repeat more frequently compared to the normal subjects. The entropy based parameters, ApEn and SampEn, are lower for CAD subjects indicating lower entropy (less activity due to impairment) for CAD. Almost all HOS parameters showed higher values for the CAD group, indicating the presence of higher frequency content in the CAD signals. Thus, our study provides a deep insight into how such nonlinear features could be exploited to effectively and reliably detect the presence of CAD.
    MeSH terms: Coronary Artery Disease/physiopathology*; Electrocardiography; Heart Rate*; Humans; Case-Control Studies; Nonlinear Dynamics*
  7. Mehrali M, Seyed Shirazi SF, Baradaran S, Mehrali M, Metselaar HS, Kadri NA, et al.
    Ultrason Sonochem, 2014 Mar;21(2):735-42.
    PMID: 24120175 DOI: 10.1016/j.ultsonch.2013.08.012
    Calcium silicate hydrate (CSH) consisting of nanosheets has been successfully synthesized assisted by a tip ultrasonic irradiation (UI) method using calcium nitrate (Ca(NO3)·4H2O), sodium silicate (Na2SiO3·9H2O) and sodium dodecyl sulfate (SDS) in water. Systematic studies found that reaction time of ultrasonic irradiation and concentrations of surfactant (SDS) in the system were important factors to control the crystallite size and morphologies. The products were characterized by X-ray power diffraction (XRD), field emission scanning electron microscopy (FESEM) and Fourier transform infrared spectrometry (FTIR). The size-strain plot (SSP) method was used to study the individual contributions of crystallite sizes and lattice strain on the peak broadening of the CSH. These characterization techniques revealed the successful formation of a crystalline phase with an average crystallite size of about 13 nm and nanosheet morphology at a reaction time of 10 min UI with 0.2 g SDS in solvent which were found to be optimum time and concentrations of SDS for the synthesis of CSH powders.
  8. Low PT, Lai MI, Ngai SC, Abdullah S
    Gene, 2014 Jan 1;533(1):451-5.
    PMID: 24120896 DOI: 10.1016/j.gene.2013.09.075
    Current viral gene delivery vectors for gene therapy are inefficient due to short-lived transgene expression attributed to the cytosine-phosphate-guanine (CpG) motifs in the transgene. Here we assessed the effects of CpG motif reduction in lentiviral (LV) gene delivery context on the level and duration of reporter gene expression in Chinese Hamster Ovary (CHO) cells, Human Immortalized Myelogenous Leukemia (K562) cells and hematopoietic stem cells (HSCs). The cells were transduced with LV carrying Zero-CpG green fluorescent protein (ZGFP) reporter gene, LV/CMV/ZGFP. The GFP expression was compared to its non CpG-depleted GFP reporter gene LV (LV/CMV/GFP) counterpart. The LV/CMV/ZGFP exhibited prolonged transgene expression in CHO cells and HSCs up to 10 days and 14 days, in the respective cells. This effect was not seen in the transduced K562 cells, which may be due to the DNA hypomethylation status of the cancer cell line. Transgene copy number analysis verified that the GFP expression was not from pseudo-transduction and the transgene remained in the genome of the cells throughout the period of the study. The modest positive effects from the LV/CMV/ZGFP suggest that the reduction of CpG in the LV construct was not substantial to generate higher and more prolonged transgene expression.
    MeSH terms: Genetic Vectors*; Humans; Lentivirus/genetics*; CpG Islands*; Transgenes*; Green Fluorescent Proteins/genetics; In Vitro Techniques
  9. Krauss SE, Collura J, Zeldin S, Ortega A, Abdullah H, Sulaiman AH
    J Youth Adolesc, 2014 Sep;43(9):1550-62.
    PMID: 24122395
    Youth–adult partnership (Y–AP) has emerged as a key practice for enacting two features of effective developmental settings: supportive adult relationships and support for efficacy and mattering. Previous studies have shown that when youth, supported by adults, actively participate in organizational and community decision making they are likely to show greater confidence and agency, empowerment and critical consciousness, and community connections. Most of the extant research on Y–AP is limited to qualitative studies and the identification of organizational best practices. Almost all research focuses on Western sociocultural settings. To address these gaps, 299 youth, age 15 to 24, were sampled from established afterschool and community programs in Malaysia to explore the contribution of Y–AP (operationalized as having two components: youth voice in decision-making and supportive adult relationships) to empowerment, agency and community connections. As hypothesized, hierarchical regressions indicated that program quality (Y–AP, safe environment and program engagement) contributed to agency, empowerment and community connections beyond the contribution of family, school and religion. Additionally, the Y–AP measures contributed substantially more variance than the other measures of program quality on each outcome. Interaction effects indicated differences by age for empowerment and agency but not for community connections. The primary findings in this inquiry replicate those found in previous interview and observational-oriented studies. The data suggests fertile ground for future research while demonstrating that Y–AP may be an effective practice for positive youth development outside of Western settings.
    MeSH terms: Adolescent; Psychology, Adolescent*; Adult; Cross-Sectional Studies; Decision Making*; Female; Humans; Malaysia; Male; Power (Psychology)*; Regression Analysis; Social Support*; Socialization; Program Evaluation; Program Development; Community Networks*; Self Efficacy*; Young Adult
  10. Röper KM, Scheumann M, Wiechert AB, Nathan S, Goossens B, Owren MJ, et al.
    Am J Primatol, 2014 Feb;76(2):192-201.
    PMID: 24123122 DOI: 10.1002/ajp.22221
    The endangered proboscis monkey (Nasalis larvatus) is a sexually highly dimorphic Old World primate endemic to the island of Borneo. Previous studies focused mainly on its ecology and behavior, but knowledge of its vocalizations is limited. The present study provides quantified information on vocal rate and on the vocal acoustics of the prominent calls of this species. We audio-recorded vocal behavior of 10 groups over two 4-month periods at the Lower Kinabatangan Wildlife Sanctuary in Sabah, Borneo. We observed monkeys and recorded calls in evening and morning sessions at sleeping trees along riverbanks. We found no differences in the vocal rate between evening and morning observation sessions. Based on multiparametric analysis, we identified acoustic features of the four common call-types "shrieks," "honks," "roars," and "brays." "Chorus" events were also noted in which multiple callers produced a mix of vocalizations. The four call-types were distinguishable based on a combination of fundamental frequency variation, call duration, and degree of voicing. Three of the call-types can be considered as "loud calls" and are therefore deemed promising candidates for non-invasive, vocalization-based monitoring of proboscis monkeys for conservation purposes.
    MeSH terms: Animals; Behavior, Animal; Borneo; Circadian Rhythm; Conservation of Natural Resources; Female; Malaysia; Male; Sound Spectrography; Speech Acoustics*; Vocalization, Animal*; Colobinae/physiology*; Endangered Species*
  11. King JH, Mahadi NM, Bong CF, Ong KH, Hassan O
    Insect Sci, 2014 Oct;21(5):584-96.
    PMID: 24123989 DOI: 10.1111/1744-7917.12061
    Coptotermes curvignathus Holmgren is capable of feeding on living trees. This ability is attributed to their effective digestive system that is furnished by the termite's own cellulolytic enzymes and cooperative enzymes produced by their gut microbes. In this study, the identity of an array of diverse microbes residing in the gut of C. curvignathus was revealed by sequencing the near-full-length 16S rRNA genes. A total of 154 bacterial phylotypes were found. The Bacteroidetes was the most abundant phylum and accounted for about 65% of the gut microbial profile. This is followed by Firmicutes, Actinobacteria, Spirochetes, Proteobacteria, TM7, Deferribacteres, Planctomycetes, Verrucomicrobia, and Termite Group 1. Based on the phylogenetic study, this symbiosis can be a result of long coevolution of gut enterotypes with the phylogenic distribution, strong selection pressure in the gut, and other speculative pressures that determine bacterial biome to follow. The phylogenetic distribution of cloned rRNA genes in the bacterial domain that was considerably different from other termite reflects the strong selection pressures in the gut where a proportional composition of gut microbiome of C. curvignathus has established. The selection pressures could be linked to the unique diet preference of C. curvignathus that profoundly feeds on living trees. The delicate gut microbiome composition may provide available nutrients to the host as well as potential protection against opportunistic pathogen.
    MeSH terms: Animals; Bacteria/classification; Bacteria/genetics; Bacteria/isolation & purification; Bacterial Proteins/genetics; Diet*; Biological Evolution*; Immunity, Innate; Molecular Sequence Data; Phylogeny; RNA, Ribosomal, 16S/genetics; Symbiosis*; Sequence Analysis, DNA; Bacterial Physiological Phenomena*; Isoptera/immunology; Isoptera/microbiology*; Isoptera/physiology*; Gastrointestinal Tract/microbiology; Microbiota*
  12. Yakub F, Md Khudzari AZ, Mori Y
    Int J Rehabil Res, 2014 Mar;37(1):9-21.
    PMID: 24126254 DOI: 10.1097/MRR.0000000000000035
    This paper presents and studies various selected literature primarily from conference proceedings, journals and clinical tests of the robotic, mechatronics, neurology and biomedical engineering of rehabilitation robotic systems. The present paper focuses of three main categories: types of rehabilitation robots, key technologies with current issues and future challenges. Literature on fundamental research with some examples from commercialized robots and new robot development projects related to rehabilitation are introduced. Most of the commercialized robots presented in this paper are well known especially to robotics engineers and scholars in the robotic field, but are less known to humanities scholars. The field of rehabilitation robot research is expanding; in light of this, some of the current issues and future challenges in rehabilitation robot engineering are recalled, examined and clarified with future directions. This paper is concluded with some recommendations with respect to rehabilitation robots.
    MeSH terms: Artificial Limbs; Equipment Design; Forecasting; Humans; Rehabilitation/instrumentation; Rehabilitation/trends*; Robotics/instrumentation; Robotics/trends*; Self-Help Devices; Spinal Cord Diseases/rehabilitation; Therapy, Computer-Assisted/instrumentation; Therapy, Computer-Assisted/trends; Stroke/rehabilitation; Mobility Limitation; Patient Safety
  13. Ong LY, Razak SN, Lee YM, Sri La Sri Ponnampalavanar S, Syed Omar SF, Azwa RI, et al.
    J Med Virol, 2014 Jan;86(1):38-44.
    PMID: 24127302 DOI: 10.1002/jmv.23772
    Expansion of antiretroviral treatment programs have led to the growing concern for the development of antiretroviral drug resistance. The aims were to assess the prevalence of drug resistant HIV-1 variants and to identify circulating subtypes among HAART-naïve patients. Plasma specimens from N = 100 HIV+ HAART-naïve adult were collected between March 2008 and August 2010 and viral RNA were extracted for nested PCR and sequenced. PR-RT sequences were protein aligned and checked for transmitted drug resistance mutations. Phylogenetic reconstruction and recombination analysis were performed to determine the genotypes. Based on the WHO consensus guidelines, none of the recruited patients had any transmitted drug resistance mutations. When analyzed against the Stanford guidelines, 35% of patients had at least one reported mutation that may reduce drug susceptibility to PI (24%), NRTI (5%), and NNRTI (14%). The commonly detected mutation that may affect current first line therapy was V179D (3%), which may lead to reduced susceptibility to NNRTI. The predominant circulating HIV-1 genotypes were CRF01_AE (51%) and CRF33_01B (17%). The prevalence of unique recombinant forms (URF) was 7%; five distinct recombinant structures involving CRF01_AE and subtype B' were observed, among them a cluster of three isolates that could form a novel circulating recombinant form (CRF) candidate. Transmitted drug resistance prevalence among HAART-naïve patients was low in this cohort of patients in Kuala Lumpur despite introduction of HAART 5 years ago. Owing to the high genetic diversity, continued molecular surveillance can identify the persistent emergence of HIV-1 URF and novel CRF with significant epidemiological impact.
    MeSH terms: Adult; Female; Gene Frequency; Genotype; Humans; Malaysia/epidemiology; Male; Middle Aged; Molecular Sequence Data; Plasma/virology; RNA, Viral/genetics; RNA, Viral/isolation & purification; Genetic Variation*; HIV-1/classification*; HIV-1/genetics*; HIV-1/isolation & purification; HIV Infections/epidemiology; HIV Infections/virology*; Polymerase Chain Reaction; Sequence Alignment; Sequence Analysis, DNA; Molecular Epidemiology; Mutation, Missense*; Drug Resistance, Viral*; Anti-Retroviral Agents/therapeutic use*; HIV Reverse Transcriptase/genetics; Young Adult
  14. Kanagasabapathy G, Chua KH, Malek SN, Vikineswary S, Kuppusamy UR
    Food Chem, 2014 Feb 15;145:198-204.
    PMID: 24128468 DOI: 10.1016/j.foodchem.2013.08.051
    Mushrooms have been used to treat various diseases for thousands of years. In the present study, the effects of Pleurotus sajor-caju mushroom on lipogenesis, lipolysis and oxidative stress in 3T3-L1 cells were investigated. The β-glucan-rich polysaccharides (GE) from P. sajor-caju stimulated lipogenesis and lipolysis but attenuated protein carbonyl and lipid hydroperoxide levels in 3T3-L1 cells. This extract caused an increase in the expression of 5'-AMP-activated protein kinase subunit γ-2 (PKRAG2) and 5'-AMP-activated protein kinase subunit γ-3 (PKRAG3) when compared to control (untreated) cells. Moreover, GE induced the expressions of hormone-sensitive lipase, adipose triglyceride lipase enzymes, leptin, adiponectin and glucose transporter-4 in 3T3-L1 cells which may have contributed to the lipolytic and insulin-like activities observed in this study. These findings suggest that GE is a novel AMPK activator that may be valuable in the formulation of nutraceuticals and functional food for the prevention and treatment of diabetes mellitus.
    MeSH terms: Animals; Insulin/pharmacology*; Lipolysis/drug effects; Polysaccharides/analysis; Polysaccharides/pharmacology*; Pleurotus/chemistry*; 3T3-L1 Cells; beta-Glucans/analysis*; Cell Proliferation/drug effects; Protein Carbonylation; Mice; AMP-Activated Protein Kinases/physiology*
  15. Yahya H, Linforth RS, Cook DJ
    Food Chem, 2014 Feb 15;145:378-87.
    PMID: 24128492 DOI: 10.1016/j.foodchem.2013.08.046
    The roasting of barley and malt products generates colour and flavour, controlled principally by the time course of product temperature and moisture content. Samples were taken throughout the industrial manufacture of three classes of roasted product (roasted barley, crystal malt and black malt) and analysed for moisture content, colour and flavour volatiles. Despite having distinct flavour characteristics, the three products contained many compounds in common. The product concentrations through manufacture of 15 flavour compounds are used to consider the mechanisms (Maillard reaction, caramelisation, pyrolysis) by which they were formed. The use of water sprays resulted in transient increases in formation of certain compounds (e.g., 2-cyclopentene-1,4-dione) and a decrease in others (e.g., pyrrole). The study highlights rapid changes in colour and particularly flavour which occur at the end of roasting and onwards to the cooling floor. This highlights the need for commercial maltsters to ensure consistency of procedures from batch to batch.
    MeSH terms: Hordeum/chemistry*; Cooking; Flavoring Agents/chemistry*; Food Handling/methods; Maillard Reaction
  16. Hasnol ND, Jinap S, Sanny M
    Food Chem, 2014 Feb 15;145:514-21.
    PMID: 24128508 DOI: 10.1016/j.foodchem.2013.08.086
    The aim of the study was to determine the effect of different types of sugar on the formation of heterocyclic amines (HCA) in marinated grilled chicken. Chicken breast samples were marinated with table sugar, brown sugar, and honey for 24h at 4 °C. The internal temperature, weight loss, free amino acids, sugars, and HCA were determined. The concentrations of all types of HCA (except IQx) in samples that were marinated with table sugar were significantly higher (p<0.006) than brown sugar; whereas those were marinated with honey had the lowest HCA concentrations. A substantial reduction in the concentration of MeIQ, PhIP, DiMeIQx, IQ, IQx, and norharman was achieved in chicken marinated with honey. A correlation study indicated that adding honey into the recipe retarded the formation of most HCA (MeIQ, DiMeIQx, IQ, IQx, norharman, and harman), whereas table sugars enhanced the formation of all HCA except norharman, harman, and AαC.
    MeSH terms: Amines/chemistry*; Animals; Chickens; Cooking; Food Handling/methods; Fructose/chemistry*; Glucose/chemistry*; Honey; Imidazoles/chemistry*; Meat/analysis*; Sucrose/chemistry*
  17. Khamis MF, Taylor JA, Malik SN, Townsend GC
    Forensic Sci Int, 2014 Jan;234:183.e1-7.
    PMID: 24128748 DOI: 10.1016/j.forsciint.2013.09.019
    Information about the sex of individuals is important for human identification. This study was conducted to quantify classification rates of sex prediction models for Malaysians using odontometric profiles. Mesiodistal (MD) and buccolingual (BL) crown dimensions of the permanent dentition were studied in 400 young adult Malaysians, giving a total of 28 tooth size variables. The sample consisted of three major ethnic groups, the Malays, Chinese and Tamils, since the aim was to assess sex dimorphism in Malaysians as a whole. Results showed that the mesiodistal diameter of the lower canine was the most sexually dimorphic dimension in Malaysian Malays and Tamils. Univariate analyses showed that the magnitude and pattern of sex dimorphism varies between these three ethnic groups, with Malaysian Chinese and Tamils being more dimorphic than the Malaysian Malays. Stepwise discriminant functions were generated bearing in mind their application in practical forensic situations. The range of classification rates was from 70.2% to 78.5% for the composite Malaysian group, and 83.8%, 77.9%, 72.4% for Malaysian Chinese, Malays and Tamils, respectively. The 'Area Under the Receiver Operating Characteristic Curve statistics' indicated good classification rates for three prediction models obtained using a combination of all tooth size variables, mandibular teeth, and mesiodistal dimensions in the composite Malaysian group, and for all tooth size variables in each ethnic group. The present study provides strong support for the value of odontometry as an adjunct scientific method for sex prediction in human identification.
    MeSH terms: Adult; Ethnic Groups; Female; Forensic Dentistry; Humans; Malaysia; Male; Odontometry*; ROC Curve; Sex Characteristics*; Observer Variation; Multivariate Analysis; Discriminant Analysis; Tooth Crown/anatomy & histology*; Dentition, Permanent; Asian Continental Ancestry Group; Young Adult
  18. Liu SH, Cummings DA, Zenilman JM, Gravitt PE, Brotman RM
    Cancer Epidemiol Biomarkers Prev, 2014 Jan;23(1):200-8.
    PMID: 24130223 DOI: 10.1158/1055-9965.EPI-13-0666
    Variable detection of human papillomavirus (HPV) DNA can result in misclassification of infection status, but the extent of misclassification has not been quantitatively evaluated.
    MeSH terms: Adult; Cervix Uteri/virology*; DNA, Viral/analysis*; Female; Humans; Vaginal Smears; Papillomaviridae/genetics*; Papillomavirus Infections/virology*
  19. Mohtar MN, Hoettges KF, Hughes MP
    Electrophoresis, 2014 Feb;35(2-3):345-51.
    PMID: 24132700 DOI: 10.1002/elps.201300420
    Alternating-current electro-osmosis, a phenomenon of fluid transport due to the interaction between an electrical double layer and a tangential electric field, has been used both for inducing fluid movement and for the concentration of particles suspended in the fluid. This offers many advantages over other phenomena used to trap particles, such as placing particles at an electrode centre rather than an edge; benefits of scale, where electrodes hundreds of micrometers across can trap particles from the molecules to cells at the same rate; and a trapping volume limited by the vortex height, a phenomenon thus far unstudied. In this paper, the collection of particles due to alternating-current electro-osmosis driven collection is examined for a range of particle concentrations, inter-electrode gap widths, chamber heights and media viscosity and density. A model of collection behaviour is described where particle collection over time is governed by two processes, one driven by the vortices and the other by sedimentation, allowing the determination of the maximum height of vortex-driven collection, but also indicates how trapping is limited by high particle concentrations and fluid velocities. The results also indicate that viscosity, rather than density, is a significant governing factor in determining the trapping behaviour of particles.
    MeSH terms: Electrodes; Models, Theoretical*; Viscosity; Microfluidic Analytical Techniques*; Electroosmosis*; Hydrodynamics
  20. Chen Q, Lee CW, Sim EU, Narayanan K
    Hum Gene Ther Methods, 2014 Feb;25(1):40-7.
    PMID: 24134118 DOI: 10.1089/hgtb.2012.188
    Direct protein delivery into the cytosol of mammalian cells by invasive Escherichia coli (E. coli) bacterial vector will bypass the need to achieve nuclear entry and transcription of DNA, a major hurdle that is known to seriously limit gene transfer. The bacterial vector is induced to express the protein during its growth phase, before presentation for entry into mammalian cells and release of its content into the cellular environment. For this class of vector, crossing the plasma membrane becomes the primary step that determines the success of protein delivery. Yet, how the mechanics of protein expression within the vector affect its entry into the host is poorly understood. We found the vector's effectiveness to enter HeLa cells diminished together with its viability when phage N15 protelomerase (TelN) expression was induced continuously in the invasive E. coli despite producing an abundant amount of functional protein. By comparison, shorter induction, even as little as 3 hr, produced sufficient amounts of functional TelN and showed more effective invasion of HeLa cells, comparable to that of uninduced invasive E. coli. These results demonstrate that brief induction of protein expression during vector growth is essential for optimal entry into mammalian cells, an important step for achieving bacteria-mediated protein delivery.
    MeSH terms: Enzyme Precursors/genetics*; Enzyme Precursors/metabolism; Escherichia coli/genetics*; Escherichia coli/metabolism; HeLa Cells; Humans; Plasmids/genetics; Plasmids/metabolism*; Tetracycline/pharmacology; Time Factors; Viral Proteins/genetics*; Viral Proteins/metabolism; Gene Expression/drug effects; Gene Transfer Techniques; Telomerase/genetics*; Telomerase/metabolism
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