Browse publications by year: 2016

  1. Yusoff, A.N., Te, L.H., Mukari, S.Z.M., Abd Hamid, A.I.
    MyJurnal
    Heschl’s gyrus (HG) is known to interact with other auditory related areas of the same hemisphere during the performance
    of an auditory cognitive task. However, the information about how it interacts with the opposite HG is still lacking.
    The aim of this study was to investigate the psychophysiologic interaction (PPI) between the bilateral HG during a
    simple arithmetic addition task and to verify the role of noise as an experimental factor that would modulate the PPI.
    Functional magnetic resonance imaging (fMRI) scans were performed on eighteen healthy participants, in which a
    single-digit addition task were solved during in-quiet (AIQ) and in-noise (AIN) conditions. The fMRI data were analysed
    using Statistical Parametric Mapping (SPM8). The interaction between the bilateral HG was investigated using PPI
    analysis. The response in right HG was found to be linearly influenced by the activity in left HG, vice-versa, for both
    in-quiet and in-noise conditions. The connectivity from right to left HG in noisy condition seemed to be modulated
    by noise, while the modulation is relatively small oppositely, indicating a non-reciprocal behavior. A two-way PPI
    model between right and left HG is suggested. The connectivity from right to left HG during a simple addition task in
    noise is driven by a higher ability of right HG to perceive the stimuli in a noisy condition. Both the bilateral HGs took
    part in the cognitive processes of arithmetic addition from which the interactions between the two were found to be
    different in noise.
    MeSH terms: Auditory Cortex; Cognition; Magnetic Resonance Imaging; Noise; Psychophysiology; Physiological Processes; Healthy Volunteers
  2. Mohd Fairul Syafiq Harun, Vijay Marimuthu
    MyJurnal
    Cervical Vestibular Evoked Myogenic Potential (cVEMP) is a routine vestibular test which checks the integrity of
    vestibulocollic reflex (VCR) pathway. Clinically, 500-Hz tone burst is widely used stimulus to evoke a cVEMP. Although
    several studies have suggested different plateau times (PT) for eliciting cVEMPs, but not many have reported the optimal
    PT for evoking cVEMP using 500 Hz tone burst stimuli. Therefore, the present study aimed to investigate the effect of
    PT on cVEMPs elicited by 500 Hz tone burst at 95 dBnHL using four different PT (0, 2, 4 and 10 ms). Thirty healthy
    adults with normal hearing and vestibular systems participated in this study. Results revealed that the P1 latency was
    significantly longer for PT 10 ms compared to other PTs. N1 latency was significantly prolonged for long PT of 10 ms
    compared to PT 2 ms. P2 latency showed no significant differences among PTs. The P1-N1 inter-amplitude values
    however revealed no significant difference across all PTs. It was found that the P1-N1 inter-amplitude was severely
    affected after 4 ms of PT. This study concluded that the PT of either 0 or 2 ms yielded the most robust cVEMP.
    MeSH terms: Adult; Humans; Reflex; Vestibule, Labyrinth; Vestibular Evoked Myogenic Potentials
  3. Nur Fadhilah Mohamad Haris, Mohd Kamal Nik Hasan, Mizaton Hazizul Hasan, Ibtisam Abdul Wahab
    MyJurnal
    This article discusses on the natural compounds from the ant plant (Myrmecodia species, family: Rubiaceae). The ethyl
    acetate (EtOAc) extract from the tuber of M. platytyrea was fractionated by using medium pressure liquid chromatography,
    giving eight fractions (F1-F8). Those fractions were evaluated using the 2, 2-diphenyl-1-picrylhydrazyl (DPPH)
    assay. Fraction F5 was recorded as potent (EC50 = 21.57 ± 1.40 µg/mL). Then, it was purified by using column
    chromatography (CC) (mobile phase = chloroform: EtOAc). From the CC, ten fractions (F5F1-F5F10) were obtained
    and compound (1) was isolated from F5F3 via preparative thin layer chromatography (TLC). After spraying with
    anisaldehyde-sulphuric reagent, compound (1) gave a green TLC spot (Rf
    = 0.65, 100% CHCl3
    , multiple development).
    The 1
    H-Nuclear Magnetic Resonance (NMR) spectroscopy (500 MHz, CDCl3
    ) was performed to determine the chemical
    framework of (1). This compound was identified as morindolide, having an iridoid structure. Meanwhile, the mass
    spectra for compounds (2) and (3) were analysed. The data presented the molecular ion at m/z 375 [M-H]- and 255,
    suggesting the formulation of 2-(2-methylbutyryl)phloroglucinol glucoside and a flavanone, respectively. From the
    literature, compound (1) was firstly isolated from a Chinese natural medicine, the dried root of Morinda officinalis
    (family: Rubiaceae). The flavonoids are also included as the biologically active compounds from Myrmecodia. In
    short, this is the first occurrence of morindolide from the ant plant.
    MeSH terms: Acetates; Animals; Ants; Benzaldehydes; Biphenyl Compounds; Chloroform; Chromatography, Thin Layer; Flavonoids; Glucosides; Lactones; Magnetic Resonance Spectroscopy; Phloroglucinol; Sulfur; Rubiaceae; Morinda; Iridoids; Flavanones
  4. Tan, Toong Seng, Yap, Wei Boon, Sharifah Syed Hassan
    MyJurnal
    The occasional influenza pandemics and the seasonal influenza epidemics have destroyed millions of lives since
    the last century. It is therefore necessary to understand the virus replication patterns as this provides essential
    information on the virus infectivity, pathogenicity and spread patterns. This study aimed to investigate the replication
    of avian influenza A virus H5N1 (A/Chicken/Malaysia/5858/2004) in MDCK cells. In this study, the TCID50 (50% tissue
    culture infectious dose) of AIV H5N1 was first determined. The MDCK cells were then infected with AIV H5N1 at TCID50
    for 0-48 h. The CPE (cytopathic effect) was observed and cell death was determined hourly. The virus-infected cells
    and media were subsequently collected for gene analysis. The results showed that the TCID50 of AIV H5N1 was 10-9
    dilution. The CPE percentage showed a strong and positive correlation with the infection period (r = 1.0, n = 9, p <
    0.01). The amount of a highly conserved influenza viral gene, M2 gene amplified from infected media (r = 0.471, n =
    9, p= > 0.05) and infected cell (r = 0.73, n = 9, p < 0.05) were also positively correlated with the infection period. In
    conclusion, although CPE started to be observed in the early time points of infection, however, the M2 gene was only
    amplified from the infected media and cells after 48 h and 24 h, respectively. This signifies that AIV H5N1 used in this
    study is pathogenic and it is able to cause severe cytopathology to host cells even at low virus load.
    MeSH terms: Animals; Chickens; DNA Replication; Dogs; Humans; Influenza, Human; Influenza A virus; Seasons; Virulence; Virus Replication; Cell Death; Influenza A Virus, H5N1 Subtype; Pandemics; Madin Darby Canine Kidney Cells
  5. Sadef Y, Poulsen TG, Habib K, Iqbal T, Nizami AS
    Waste Manag, 2016 Oct;56:396-402.
    PMID: 27342191 DOI: 10.1016/j.wasman.2016.06.018
    Composting can potentially remove organic pollutants in sewage sludge. When estimating pollutant removal efficiency, knowledge of estimate uncertainty is important for understanding estimate reliability. In this study the uncertainty (coefficient of variation, CV) in pollutant degradation rate (K1) and relative concentration at 35days of composting (C35/C0) was evaluated. This was done based on recently presented pollutant concentration data, measured under full-scale composting conditions using two different sampling methods for a range of organic pollutants commonly found in sewage sludge. Non-parametric statistical procedures were used to estimate CV values for K1 and C35/C0 for individual pollutants. These were then used to compare the two sampling methods with respect to CV and to determine confidence intervals for average CV. Results showed that sampling method is crucial for reducing uncertainty. The results further indicated that it is possible to achieve CV values for both K1 and C35/C0 of about 15%.
    MeSH terms: Biodegradation, Environmental; Environmental Monitoring; Models, Theoretical; Sewage/analysis*; Soil/chemistry; Waste Disposal, Fluid/methods*; Water Pollutants, Chemical/analysis*; Waste Management/methods*; Uncertainty
  6. Alareqi LMQ, Mahdy MAK, Lau YL, Fong MY, Abdul-Ghani R, Mahmud R
    Acta Trop, 2016 Oct;162:174-179.
    PMID: 27343362 DOI: 10.1016/j.actatropica.2016.06.016
    Since 2005, artesunate (AS) plus sulfadoxine/pyrimethamine (SP) combination has been adopted as the first-line treatment for uncomplicated malaria in Yemen in response to the high level of Plasmodium falciparum resistance to chloroquine (CQ). Therefore, the aim of the present study was to determine the frequency distribution of molecular markers associated with resistance to CQ and AS plus SP combination among P. falciparum isolates from a malaria-endemic area in Taiz governorate, Yemen. Fifty P. falciparum isolates were collected during a cross-sectional study in Mawza district, Taiz, in the period from October 2013 to April 2014. The isolates were investigated for drug resistance-associated molecular markers in five genes, including P. falciparum CQ resistance transporter (pfcrt) 76T and P. falciparum multidrug resistance 1 (pfmdr1) 86Y as markers of resistance to CQ, mutations in the Kelch 13 (K13) propeller domain for resistance to AS, and P. falciparum dihydrofolate reductase (pfdhfr) and P. falciparum dihydropteroate synthase (pfdhps) genes for resistance to SP. Nested polymerase chain reaction was used to amplify target genes in DNA extracts of the isolates followed by restriction fragment length polymorphism for detecting 76T and 86Y mutations in pfcrt and pfmdr1, respectively, and by DNA sequencing for detecting mutations in K13, pfdhfr and pfdhps. All the investigated isolates from Mawza district were harboring the pfcrt 76T mutant and the pfmdr1 N86 wild-type alleles. The pfdhfr 51I/108N double mutant allele was found in 2.2% (1/45) of the isolates; however, no mutations were detected at codons 436, 437, 540, 581 and 613 of pfdhps. All P. falciparum isolates that were successfully sequenced (n=47) showed the K13 Y493, R539, I543 and C580 wild-type alleles. In conclusion, the pfcrt 76T mutant allele is fixed in the study area about six years after the official withdrawal of CQ, possibly indicating its over-the-counter availability and continued use as a self-medication in the study area. However, the almost predominant wild-type alleles of the genes associated with resistance to AS and SP among P. falciparum isolates in the present study indicates the sustained efficacy of the currently adopted first-line treatment of AS plus SP in the study area.
    MeSH terms: Alleles; Antimalarials/pharmacology*; Chloroquine/pharmacology; Cross-Sectional Studies; Dihydropteroate Synthase/genetics; Drug Combinations; Drug Resistance/genetics*; Genotype; Mutation; Plasmodium falciparum/genetics*; Pyrimethamine/pharmacology; Polymorphism, Restriction Fragment Length; Sulfadoxine/pharmacology; Tetrahydrofolate Dehydrogenase/genetics; Yemen; Polymerase Chain Reaction; Malaria, Falciparum/drug therapy*; Sequence Analysis, DNA; Membrane Transport Proteins/genetics; Artemisinins/pharmacology
  7. Abdulbaqi HR, Himratul-Aznita WH, Baharuddin NA
    Arch Oral Biol, 2016 Oct;70:117-124.
    PMID: 27343694 DOI: 10.1016/j.archoralbio.2016.06.011
    OBJECTIVE: Green tea (Gt), leafs of Camellia sinensis var. assamica, is widely consumed as healthy beverage since thousands of years in Asian countries. Chewing sticks (miswak) of Salvadora persica L. (Sp) are traditionally used as natural brush to ensure oral health in developing countries. Both Gt and Sp extracts were reported to have anti-bacterial activity against many dental plaque bacteria. However, their combination has never been tested to have anti-bacterial and anti-adherence effect against primary dental plaque colonizers, playing an initial role in the dental plaque development, which was investigated in this study.

    METHODS: Two-fold serial micro-dilution method was used to measure minimal inhibitory concentration (MIC) of aqueous extracts of Gt, Sp and their combinations. Adsorption to hexadecane was used to determine the cell surface hydrophobicity (CSH) of bacterial cells. Glass beads were used to mimic the hard tissue surfaces, and were coated with saliva to develop experimental pellicles for the adhesion of the primary colonizing bacteria.

    RESULTS: Gt aqueous extracts exhibited better anti-plaque effect than Sp aqueous extracts. Their combination, equivalent to 1/4 and 1/2 of MIC values of Gt and Sp extracts respectively, showed synergistic anti-plaque properties with fractional inhibitory concentration (FIC) equal to 0.75. This combination was found to significantly reduce CSH (p<0.05) and lower the adherence ability (p<0.003) towards experimental pellicles.

    CONCLUSION: Combination between Gt and Sp aqueous extracts exhibited synergistic anti-plaque activity, and could be used as a useful active agent to produce oral health care products.

    MeSH terms: Anti-Bacterial Agents/pharmacology; Bacterial Adhesion/drug effects; Dental Plaque/drug therapy; Dental Plaque/microbiology*; Drug Synergism; Microbial Sensitivity Tests; Plant Extracts/pharmacology*; Saliva/chemistry; Streptococcus sanguis/drug effects*; Streptococcus sanguis/physiology; Tea/chemistry*; Actinomyces viscosus/drug effects*; Actinomyces viscosus/physiology; Biofilms/drug effects; Salvadoraceae/chemistry*; Streptococcus mitis/drug effects*; Streptococcus mitis/physiology; Dental Pellicle/microbiology
  8. Hashim YZ, Kerr PG, Abbas P, Mohd Salleh H
    J Ethnopharmacol, 2016 Aug 02;189:331-60.
    PMID: 27343768 DOI: 10.1016/j.jep.2016.06.055
    ETHNOPHARMACOLOGICAL RELEVANCE: Aquilaria spp. (agarwood) has been a part of Ayurvedic and Traditional Chinese Medicine for centuries. Agarwood has also been used as a traditional medicine in Southeast Asian countries, Bangladesh and Tibet. Its common uses include the treatment of joint pain, inflammatory-related ailments, and diarrhoea, as well as a stimulant, sedative and cardioprotective agent. In this paper, we aim to provide an overview of the phytochemistry, ethnomedicinal use, pharmacological activities and safety of plant materials from Aquilaria spp. as an evidence base to further appraise its potential use as a source of health beneficial compounds.

    MATERIALS AND METHODS: Literature abstracts and full text articles from journals, books, reports and electronic searches (Google Scholar, Elsevier, PubMed, Read Cube, Scopus, Springer, and Web of Science), as well as from other relevant websites, are surveyed, analysed and included in this review.

    RESULTS: A literature survey of agarwood plant materials showed that they contain sesquiterpenes, 2(-2-phenylethyl)-4H-chromen-4-one derivatives, genkwanins, mangiferins, iriflophenones, cucurbitacins, terpenoids and phenolic acids. The crude extracts and some of the isolated compounds exhibit anti-allergic, anti-inflammatory, anti-diabetic, anti-cancer, anti-oxidant, anti-ischemic, anti-microbial, hepatoprotective, laxative, and mosquitocidal properties and effects on the central nervous system. Agarwood plant materials are considered to be safe based on the doses tested. However, the toxicity and safety of the materials, including the smoke from agarwood incense burning, should be further investigated. Future research should be directed towards the bio-guided isolation of bioactive compounds with proper chemical characterisation and investigations of the underlying mechanisms towards drug discovery.

    CONCLUSIONS: The traditional medicinal use of agarwood plant materials has provided clues to their pharmacological properties. Indeed, agarwood contains a plethora of bioactive compounds that now elegantly support their use in traditional medicine. As wild agarwood trees are critically endangered and vulnerable, sustainable agricultural and forestry practices are necessary for the further development and utilization of agarwood as a source of health beneficial compounds.

    MeSH terms: Animals; Humans; Phytotherapy; Medicine, Traditional*; Plant Extracts/adverse effects; Plant Extracts/isolation & purification; Plant Extracts/therapeutic use*; Plant Extracts/chemistry; Plants, Medicinal; Risk Assessment; Toxicity Tests; Ethnobotany; Ethnopharmacology; Thymelaeaceae/classification; Thymelaeaceae/chemistry*; Phytochemicals/adverse effects; Phytochemicals/isolation & purification; Phytochemicals/therapeutic use*; Phytochemicals/chemistry
  9. Azmahani A, Nakamura Y, Ishida H, McNamara KM, Fujimura T, Haga T, et al.
    Hum Pathol, 2016 10;56:128-33.
    PMID: 27343835 DOI: 10.1016/j.humpath.2016.06.005
    Sex steroids have been postulated to influence skin development and functions as well as its pathogenesis. MCC occurs in both sexes; however, the specific differences in pathogenesis among sexes have yet to be conclusively defined. The detailed status of sex steroid receptors (AR, PRA and PRB, and ERα, ERβ) are also unknown in MCC patients. We first immunolocalized sex steroid receptors and compared the results with immunolocalization of relevant transcription factors including SOX2, FOXA1, and Bcl-2 and Ki-67 in 18 cases of MCCs. AR, PRA, PRB, ERα, ERβ, Bcl-2, SOX2, and FOXA1 immunoreactivity was evaluated by using the modified H score method, and Ki-67 was quantified using labeling index. ERβ immunoreactivity was markedly present in all the cases of MCC examined, with relatively weak immunoreactivity of ERα, AR, PRA, and PRB. The status of ERβ immunoreactivity was also significantly correlated with Ki-67 labeling index and Bcl-2 score. These results demonstrated that ERβ could be associated with regulation of both cell proliferation and apoptosis in MCCs.
    MeSH terms: Aged; Aged, 80 and over; Female; Humans; Immunohistochemistry; Male; Middle Aged; Skin Neoplasms/pathology; Skin Neoplasms/chemistry*; Transcription Factors/analysis; Biomarkers, Tumor/analysis*; Carcinoma, Merkel Cell/pathology; Carcinoma, Merkel Cell/chemistry*; Apoptosis; Proto-Oncogene Proteins c-bcl-2/analysis; Ki-67 Antigen/analysis; Estrogen Receptor beta/analysis*; Cell Proliferation
  10. Murugan K, Anitha J, Dinesh D, Suresh U, Rajaganesh R, Chandramohan B, et al.
    Ecotoxicol Environ Saf, 2016 Oct;132:318-28.
    PMID: 27344400 DOI: 10.1016/j.ecoenv.2016.06.021
    Mosquitoes are arthropods of huge medical and veterinary relevance, since they vector pathogens and parasites of public health importance, including malaria, dengue and Zika virus. Currently, nanotechnology is considered a potential eco-friendly approach in mosquito control research. We proposed a novel method of biofabrication of silver nanoparticles (AgNP) using chitosan (Ch) from crab shells. Ch-AgNP nanocomposite was characterized by UV-vis spectroscopy, FTIR, SEM, EDX and XRD. Ch-AgNP were tested against larvae and pupae of the malaria vector Anopheles stephensi obtaining LC50 ranging from 3.18 ppm (I) to 6.54 ppm (pupae). The antibacterial properties of Ch-AgNP were proved against Bacillus subtilis, Klebsiella pneumoniae and Salmonella typhi, while no growth inhibition was reported in assays conducted on Proteus vulgaris. Concerning non-target effects, in standard laboratory considtions the predation efficiency of Danio rerio zebrafishes was 68.8% and 61.6% against I and II instar larvae of A. stephensi, respectively. In a Ch-AgNP-contaminated environment, fish predation was boosted to 89.5% and 77.3%, respectively. Quantitative analysis of antioxidant enzymes SOD, CAT and LPO from hepatopancreas of fresh water crabs Paratelphusa hydrodromous exposed for 16 days to a Ch-AgNP-contaminated aquatic environment were conducted. Notably, deleterious effects of Ch-AgNP contaminating aquatic enviroment on the non-target crab P. hydrodromous were observed, particularly when doses higher than 8-10ppm are tested. Overall, this research highlights the potential of Ch-AGNP for the development of newer control tools against young instar populations of malaria mosquitoes, also highlighting some risks concerned the employ of nanoparticles in aquatic environments.
    MeSH terms: Zika Virus; Animals; Anopheles; Antioxidants; Arthropods; Bacillus subtilis; Brachyura; Klebsiella pneumoniae; Larva; Mosquito Control; Parasites; Proteus vulgaris; Pupa; Salmonella typhi; Zebrafish; Chitosan
  11. Braz GP, Russold MF, Fornusek C, Hamzaid NA, Smith RM, Davis GM
    Med Eng Phys, 2016 11;38(11):1223-1231.
    PMID: 27346492 DOI: 10.1016/j.medengphy.2016.06.007
    This pilot study reports the development of a novel closed-loop (CL) FES-gait control system, which employed a finite-state controller that processed kinematic feedback from four miniaturized motion sensors. This strategy automated the control of knee extension via quadriceps and gluteus stimulation during the stance phase of gait on the supporting leg, and managed the stimulation delivered to the common peroneal nerve (CPN) during swing-phase on the contra-lateral limb. The control system was assessed against a traditional open-loop (OL) system on two sensorimotor 'complete' paraplegic subjects. A biomechanical analysis revealed that the closed-loop control of leg swing was efficient, but without major advantages compared to OL. CL automated the control of knee extension during the stance phase of gait and for this reason was the method of preference by the subjects. For the first time, a feedback control system with a simplified configuration of four miniaturized sensors allowed the addition of instruments to collect the data of multiple physiological and biomechanical variables during FES-evoked gait. In this pilot study of two sensorimotor complete paraplegic individuals, CL ameliorated certain drawbacks of current OL systems - it required less user intervention and accounted for the inter-subject differences in their stimulation requirements.
    MeSH terms: Biomechanical Phenomena; Electric Stimulation Therapy/instrumentation*; Exercise Test; Feasibility Studies; Feedback; Humans; Muscle Contraction; Pilot Projects; Spinal Cord Injuries/physiopathology*; Spinal Cord Injuries/therapy*; Walking*
  12. Lam EP, Moore CL, Gotuzzo E, Nwizu C, Kamarulzaman A, Chetchotisakd P, et al.
    AIDS Res Hum Retroviruses, 2016 09;32(9):841-50.
    PMID: 27346600 DOI: 10.1089/AID.2015.0331
    We investigate mutations and correlates according to HIV-1 subtype after virological failure (VF) of standard first-line antiretroviral therapy (ART) (non-nucleoside/nucleotide reverse transcriptase inhibitor [NNRTI] +2 nucleoside/nucleotide reverse transcriptase inhibitor [N(t)RTI]). SECOND-LINE study participants were assessed at baseline for HIV-1 subtype, demographics, HIV-1 history, ART exposure, viral load (VL), CD4(+) count, and genotypic ART resistance. We used backward stepwise multivariate regression (MVR) to assess associations between baseline variables and presence of ≥3 N(t)RTI mutations, ≥1 NNRTI mutation, ≥3 thymidine analog-N(t)RTI [ta-N(t)RTI] mutations (TAMs), the K65/K70 mutation, and predicted etravirine (ETV)/rilpivirine (RPV) activity. The inclusion p-value for MVR was p  .05. Of 541 participants, 491 (91%) had successfully characterized baseline viral isolates. Subtype distribution: B (n = 123, 25%), C (n = 202, 41%), CRF01_AE (n = 109, 22%), G (n = 25, 5%), and CRF02_AG (n = 27, 5%). Baseline CD4(+) 200-394 cells/mm(3) were associated with <3 N(t)RTI mutations (OR = 0.47; 95% CI 0.29-0.77; p = .003), absence of the K65/K70 mutation (OR = 0.43; 95% CI 0.26-0.73; p = .002), and higher ETV sensitivity (OR = 0.52; 95% CI 0.35-0.78; p = .002). Recent tenofovir (TDF) use was associated with K65/K70 mutations (OR = 8.91; 95% CI 5.00-15.85; p 
    MeSH terms: Adult; Female; Genotype*; Humans; Male; Middle Aged; Mutation; HIV-1/classification; HIV-1/drug effects*; HIV-1/genetics; HIV-1/isolation & purification; HIV Infections/drug therapy*; HIV Infections/virology*; Treatment Failure; Antiretroviral Therapy, Highly Active/methods; Drug Resistance, Viral*; Anti-Retroviral Agents/pharmacology*; Anti-Retroviral Agents/therapeutic use*
  13. Adamu A, Wahab RA, Huyop F
    Springerplus, 2016;5(1):695.
    PMID: 27347470 DOI: 10.1186/s40064-016-2328-9
    l-2-Haloacid dehalogenase (DehL) from Rhizobium sp. RC1 is a stereospecific enzyme that acts exclusively on l-isomers of 2-chloropropionate and dichloroacetate. The amino acid sequence of this enzyme is substantially different from those of other l-specific dehalogenases produced by other organisms. DehL has not been crystallised, and hence its three-dimensional structure is unavailable. Herein, we review what is known concerning DehL and tentatively identify the amino acid residues important for catalysis based on a comparative structural and sequence analysis with well-characterised l-specific dehalogenases.
  14. Merovci F, Khaleel MA, Ibrahim NA, Shitan M
    Springerplus, 2016;5(1):697.
    PMID: 27347471 DOI: 10.1186/s40064-016-2271-9
    We develop a new continuous distribution called the beta-Burr type X distribution that extends the Burr type X distribution. The properties provide a comprehensive mathematical treatment of this distribution. Further more, various structural properties of the new distribution are derived, that includes moment generating function and the rth moment thus generalizing some results in the literature. We also obtain expressions for the density, moment generating function and rth moment of the order statistics. We consider the maximum likelihood estimation to estimate the parameters. Additionally, the asymptotic confidence intervals for the parameters are derived from the Fisher information matrix. Finally, simulation study is carried at under varying sample size to assess the performance of this model. Illustration the real dataset indicates that this new distribution can serve as a good alternative model to model positive real data in many areas.
  15. Pearson RD, Amato R, Auburn S, Miotto O, Almagro-Garcia J, Amaratunga C, et al.
    Nat Genet, 2016 Aug;48(8):959-964.
    PMID: 27348299 DOI: 10.1038/ng.3599
    The widespread distribution and relapsing nature of Plasmodium vivax infection present major challenges for the elimination of malaria. To characterize the genetic diversity of this parasite in individual infections and across the population, we performed deep genome sequencing of >200 clinical samples collected across the Asia-Pacific region and analyzed data on >300,000 SNPs and nine regions of the genome with large copy number variations. Individual infections showed complex patterns of genetic structure, with variation not only in the number of dominant clones but also in their level of relatedness and inbreeding. At the population level, we observed strong signals of recent evolutionary selection both in known drug resistance genes and at new loci, and these varied markedly between geographical locations. These findings demonstrate a dynamic landscape of local evolutionary adaptation in the parasite population and provide a foundation for genomic surveillance to guide effective strategies for control and elimination of P. vivax.
    MeSH terms: Biological Evolution*; Genetic Markers/genetics*; Humans; Plasmodium vivax/genetics*; Plasmodium vivax/pathogenicity; Genetic Variation/genetics*; Malaria, Vivax/genetics*; Malaria, Vivax/parasitology; Malaria, Vivax/transmission; Genomics/methods*
  16. Law JX, Musa F, Ruszymah BH, El Haj AJ, Yang Y
    Med Eng Phys, 2016 Sep;38(9):854-61.
    PMID: 27349492 DOI: 10.1016/j.medengphy.2016.05.017
    Collagen and fibrin are widely used in tissue engineering due to their excellent biocompatibility and bioactivities that support in vivo tissue formation. These two hydrogels naturally present in different wound healing stages with different regulatory effects on cells, and both of them are mechanically weak in the reconstructed hydrogels. We conducted a comparative study by the growth of rat dermal fibroblasts or dermal fibroblasts and epidermal keratinocytes together in collagen and fibrin constructs respectively with and without the reinforcement of electrospun poly(lactic acid) nanofiber mesh. Cell proliferation, gel contraction and elastic modulus of the constructs were measured on the same gels at multiple time points during the 22 day culturing period using multiple non-destructive techniques. The results demonstrated considerably different cellular activities within the two types of constructs. Co-culturing keratinocytes with fibroblasts in the collagen constructs reduced the fibroblast proliferation, collagen contraction and mechanical strength at late culture point regardless of the presence of nanofibers. Co-culturing keratinocytes with fibroblasts in the fibrin constructs promoted fibroblast proliferation but exerted no influence on fibrin contraction and mechanical strength. The presence of nanofibers in the collagen and fibrin constructs played a favorable role on the fibroblast proliferation when keratinocytes were absent. Thus, this study exhibited new evidence of the strong cross-talk between keratinocytes and fibroblasts, which can be used to control fibroblast proliferation and construct contraction. This cross-talk activity is extracellular matrix-dependent in terms of the fibrous network morphology, density and strength.
    MeSH terms: Animals; Collagen; Extracellular Matrix; Fibrin; Fibroblasts; Polyesters; Wound Healing; Keratinocytes; Hydrogels; Tissue Engineering; Cell Proliferation; Rats; Elastic Modulus; Nanofibers
  17. Tang SS, Carlin NI, Talukder KA, Cam PD, Verma NK
    BMC Microbiol, 2016 Jun 27;16(1):127.
    PMID: 27349637 DOI: 10.1186/s12866-016-0746-z
    BACKGROUND: Shigella spp. are the primary causative agents of bacillary dysentery. Since its emergence in the late 1980s, the S. flexneri serotype 1c remains poorly understood, particularly with regard to its origin and genetic evolution. This article provides a molecular insight into this novel serotype and the gtrIC gene cluster that determines its unique immune recognition.

    RESULTS: A PCR of the gtrIC cluster showed that serotype 1c isolates from different geographical origins were genetically conserved. An analysis of sequences flanking the gtrIC cluster revealed remnants of a prophage genome, in particular integrase and tRNA(Pro) genes. Meanwhile, Southern blot analyses on serotype 1c, 1a and 1b strains indicated that all the tested serotype 1c strains may have had a common origin that has since remained distinct from the closely related 1a and 1b serotypes. The identification of prophage genes upstream of the gtrIC cluster is consistent with the notion of bacteriophage-mediated integration of the gtrIC cluster into a pre-existing serotype.

    CONCLUSIONS: This is the first study to show that serotype 1c isolates from different geographical origins share an identical pattern of genetic arrangement, suggesting that serotype 1c strains may have originated from a single parental strain. Analysis of the sequence around the gtrIC cluster revealed a new site for the integration of the serotype converting phages of S. flexneri. Understanding the origin of new pathogenic serotypes and the molecular basis of serotype conversion in S. flexneri would provide information for developing cross-reactive Shigella vaccines.

    MeSH terms: Bacteriophages/genetics*; Base Sequence; DNA, Bacterial/genetics*; Dysentery, Bacillary/microbiology; Multigene Family/genetics*; Glucosyltransferases/genetics; RNA, Transfer; Serotyping; Shigella flexneri/genetics*; Shigella flexneri/immunology; Shigella flexneri/virology*; Blotting, Southern; Bacterial Typing Techniques; Polymerase Chain Reaction; Virus Integration/genetics*; Genome, Viral; Sequence Analysis; O Antigens/genetics; Evolution, Molecular; Prophages/genetics; Serogroup*
  18. Hweissa NA, Lim JN, Su TT
    Eur J Cancer Care (Engl), 2016 Sep;25(5):864-70.
    PMID: 27350095 DOI: 10.1111/ecc.12537
    In Libya, cervical cancer is ranked third as the most frequent cancer among women with early diagnosis being shown to reduce morbidity and mortality. Health-care providers can influence women's screening behaviours, and their lack of recommendations for screening can be one of the barriers that affect women's participation in screening programmes. This study aims to assess the health-care provider's perception around cervical cancer screening. In-depth, face-to-face interviews were conducted with 16 health-care providers, from both public and private sectors in Az-Zawiya city, Libya, between February and July of 2014. The interviews were recorded and transcribed, then analysed using thematic analysis. Our findings suggest that health-care providers did not provide sufficient information regarding cervical cancer screening for women who attend health-care facilities. The results highlight the role played by health-care professionals in motivating women to attend cervical cancer screening programs, and the need for health education of health-care providers to offer a precious advice regarding the screening. On the other hand, health-care providers highlighted that implementation of reminding system of cervical cancer screening will support them to improve screening attendance. In addition, health-care providers stressed the necessity for educational and awareness campaigns of cervical cancer screening among Libyan women.
    MeSH terms: Advertising as Topic; Attitude of Health Personnel*; Awareness; Uterine Cervical Neoplasms/prevention & control*; Costs and Cost Analysis; Health Expenditures; Female; Health Education; Humans; Health Knowledge, Attitudes, Practice; Libya; Male; Mass Screening; Motivation; Patient Acceptance of Health Care/psychology; Patient Acceptance of Health Care/statistics & numerical data; Patient Compliance; Perception; Quality of Health Care; Vaginal Smears/economics; Vaginal Smears/psychology; Vaginal Smears/statistics & numerical data; Reminder Systems; Private Sector; Public Sector; Practice Guidelines as Topic; Early Detection of Cancer/economics; Early Detection of Cancer/psychology*
  19. Bonsu KO, Owusu IK, Buabeng KO, Reidpath DD, Kadirvelu A
    Ther Clin Risk Manag, 2016;12:887-906.
    PMID: 27350750 DOI: 10.2147/TCRM.S106065
    Heart failure (HF) is a major public health priority due to its epidemiological transition and the world's aging population. HF is typified by continuous loss of contractile function with reduced, normal, or preserved ejection fraction, elevated vascular resistance, fluid and autonomic imbalance, and ventricular dilatation. Despite considerable advances in the treatment of HF over the past few decades, mortality remains substantial. Pharmacological treatments including β-blockers, angiotensin-converting enzyme inhibitors, angiotensin receptor blockers, and aldosterone antagonists have been proven to prolong the survival of patients with HF. However, there are still instances where patients remain symptomatic, despite optimal use of existing therapeutic agents. This understanding that patients with chronic HF progress into advanced stages despite receiving optimal treatment has increased the quest for alternatives, exploring the roles of additional pathways that contribute to the development and progression of HF. Several pharmacological targets associated with pathogenesis of HF have been identified and novel therapies have emerged. In this work, we review recent evidence from proposed mechanisms to the outcomes of experimental and clinical studies of the novel pharmacological agents that have emerged for the treatment of HF.
External Links