Browse publications by year: 2019

  1. Rupani PF, Alkarkhi AFM, Shahadat M, Embrandiri A, El-Mesery HS, Wang H, et al.
    PMID: 31200470 DOI: 10.3390/ijerph16122092
    The present study reports mathematical modelling of palm oil mill effluent and palm-pressed fiber mixtures (0% to 100%) during vermicomposting process. The effects of different mixtures with respect to pH, C:N ratio and earthworms have been optimized using the modelling parameters. The results of analysis of variance have established effect of different mixtures of palm oil mill effluent plus palm press fiber and time, under selected physicochemical responses (pH, C:N ratio and earthworm numbers). Among all mixtures, 60% mixture was achieved optimal growth at pH 7.1 using 16.29 C:N ratio in 15 days of vermicomposting. The relationship between responses, time and different palm oil mill waste mixtures have been summarized in terms of regression models. The obtained results of mathematical modeling suggest that these findings have potential to serve a platform for further studies in terms of kinetic behavior and degradation of the biowastes via vermicomposting.
    MeSH terms: Animals; Industrial Waste*; Models, Theoretical*; Oligochaeta/metabolism*; Biomass
  2. Teow SY, Liew K, Che Mat MF, Marzuki M, Abdul Aziz N, Chu TL, et al.
    BMC Biotechnol, 2019 06 14;19(1):34.
    PMID: 31200673 DOI: 10.1186/s12896-019-0528-4
    BACKGROUND: In vitro modelling of cancer cells is becoming more complex due to prevailing evidence of intimate interactions between cancer cells and their surrounding stroma. A co-culture system which consists of more than one cell type is physiologically more relevant and thus, could serve as a useful model for various biological studies. An assay that specifically detects the phenotypic changes of cancer cells in a multi-cellular system is lacking for nasopharyngeal carcinoma (NPC).

    RESULTS: Here, we describe a luciferase/luciferin (XenoLuc) assay that could specifically measure changes in the proliferation of cancer cells in the co-culture system using two modified NPC patient-derived tumour xenograft (PDTXs) cells: Xeno284-gfp-luc2 and XenoB110-gfp-luc2. Through this assay, we are able to show that the growth of NPC xenograft cells in both two-dimensional (2D) and three-dimensional (3D) models was enhanced when co-cultured with normal human dermal fibroblasts (NHDFs). In addition, potential applications of this assay in in vitro drug or inhibitor screening experiments are also illustrated.

    CONCLUSIONS: XenoLuc assay is specific, sensitive, rapid and cost-effective for measuring the growth of luciferase-expressing cells in a co- or multiple-culture system. This assay may also be adapted for tumour microenvironment studies as well as drug screening experiments in more complex 3D co-culture systems.

    MeSH terms: Animals; Cells, Cultured; Fibroblasts/cytology; Fibroblasts/metabolism*; Humans; Luciferases/genetics; Luciferases/metabolism*; Luminescent Measurements/methods; Transplantation, Heterologous; Mice, SCID; Mice, Inbred NOD; Mice, Knockout; Coculture Techniques; Cell Line, Tumor; Green Fluorescent Proteins/genetics; Green Fluorescent Proteins/metabolism*; HEK293 Cells
  3. Nasreen HE, Pasi HB, Rifin SM, Aris MAM, Rahman JA, Rus RM, et al.
    BMC Pregnancy Childbirth, 2019 Jun 14;19(1):201.
    PMID: 31200677 DOI: 10.1186/s12884-019-2349-9
    BACKGROUND: Antepartum depressive and anxiety symptoms (ADS and AAS) are prevalent in Malaysia. Prior evidence linking maternal ADS and AAS with adverse birth outcomes and caesarean section (CS) or instrumental delivery is conflicting. There is no research in Malaysia on the association between maternal mental disorders and adverse birth outcomes and mode of delivery. This study aims to investigate the independent effect of maternal ADS and AAS on low birth weight (LBW), preterm birth (PTB) and CS or instrumental delivery among women in east and west coasts of Malaysia.

    METHODS: We used data from a prospective cohort study of 799 pregnant women from health clinics of two states in east and west coasts of Malaysia. Baseline data were measured at the third trimester of pregnancy on ADS, AAS, socioeconomic condition, anthropometric status, reproductive history and intimate partner violence. Birth outcomes and mode of delivery were determined at the time of delivery. Univariate and multiple Cox's regressions were applied to assess the association between ADS and AAS and LBW, PTB and CS or instrumental delivery.

    RESULTS: ADS was significantly associated with an increased risk of giving birth to LBW babies in both east coast (RR = 3.64; 95% CI 1.79-7.40) and west coast (RR = 3.82; 95% CI 1.86-7.84), but not with PTB. AAS was associated with increased risk of both LBW (RR = 2.47; 95% CI 1.39-4.38) and PTB (RR = 2.49; 95% CI 1.16-5.36) in the east coast, but not in west coast. The risk of CS or instrumental delivery was evident among women with ADS (RR = 2.44; 95% CI 1.48-4.03) in west coast only.

    CONCLUSION: ADS predicts LBW in both coasts, AAS predicts LBW and PTB in east coast, and ADS predicts CS or instrumental delivery in west coast. Policies aimed at detection and management of ADS and AAS during antenatal check-up in health clinics may help improve birth outcomes and reduce obstetric interventions.

    MeSH terms: Adult; Cesarean Section/statistics & numerical data; Female; Humans; Infant, Low Birth Weight; Infant, Newborn; Malaysia/epidemiology; Pregnancy; Pregnancy Outcome/epidemiology; Prospective Studies; Prevalence; Pregnant Women/psychology*; Premature Birth/epidemiology
  4. Leong HY, Abdul Azize NA, Chew HB, Keng WT, Thong MK, Mohd Khalid MKN, et al.
    Orphanet J Rare Dis, 2019 06 14;14(1):143.
    PMID: 31200731 DOI: 10.1186/s13023-019-1105-6
    BACKGROUND: Mucopolysaccharidosis IVA (MPS IVA) is an autosomal recessive lysosomal storage disease due to N-acetylgalactosamine-6-sulfatase (GALNS) deficiency. It results in accumulation of the glycosaminoglycans, keratan sulfate and chondroitin-6-sulfate, leading to skeletal and other systemic impairments. Data on MPS IVA in Asian populations are scarce.

    METHODS: This is a multicentre descriptive case series of 21 patients comprising all MPS IVA patients in Malaysia. Mutational analysis was performed by PCR and Sanger sequencing of the GALNS gene in 17 patients.

    RESULTS: The patients (15 females and 6 males) had a mean age (± SD) of 15.5 (± 8.1) years. Mean age at symptom onset was 2.6 (± 2.1) years and at confirmed diagnosis was 6.9 (± 4.5) years. The study cohort included patients from all the main ethnic groups in Malaysia - 57% Malay, 29% Chinese and 14% Indian. Common presenting symptoms included pectus carinatum (57%) and genu valgum (43%). Eight patients (38%) had undergone surgery, most commonly knee surgeries (29%) and cervical spine decompression (24%). Patients had limited endurance with lower mean walking distances with increasing age. GALNS gene analysis identified 18 distinct mutations comprising 13 missense, three nonsense, one small deletion and one splice site mutation. Of these, eight were novel mutations (Tyr133Ser, Glu158Valfs*12, Gly168*, Gly168Val, Trp184*, Leu271Pro, Glu320Lys, Leu508Pro). Mutations in exons 1, 5 and 9 accounted for 51% of the mutant alleles identified.

    CONCLUSIONS: All the MPS IVA patients in this study had clinical impairments. A better understanding of the natural history and the clinical and genetic spectrum of MPS IVA in this population may assist early diagnosis, improve management and permit timely genetic counselling and prenatal diagnosis.

    MeSH terms: Adolescent; Adult; Child; Child, Preschool; Chondroitinsulfatases/genetics; Chondroitinsulfatases/metabolism; Female; Humans; Malaysia; Male; Mucopolysaccharidosis IV/genetics*; Mucopolysaccharidosis IV/metabolism; Mucopolysaccharidosis IV/pathology*; Cohort Studies; Young Adult
  5. Vijayasingham L, Rhule E, Asgari-Jirhandeh N, Allotey P
    Lancet Glob Health, 2019 07;7(7):e843-e844.
    PMID: 31200884 DOI: 10.1016/S2214-109X(19)30196-2
    MeSH terms: Developing Countries*; Humans; Income; Poverty; Public Policy; Transients and Migrants*
  6. Yildirim O, Baloglu UB, Tan RS, Ciaccio EJ, Acharya UR
    Comput Methods Programs Biomed, 2019 Jul;176:121-133.
    PMID: 31200900 DOI: 10.1016/j.cmpb.2019.05.004
    BACKGROUND AND OBJECTIVE: For diagnosis of arrhythmic heart problems, electrocardiogram (ECG) signals should be recorded and monitored. The long-term signal records obtained are analyzed by expert cardiologists. Devices such as the Holter monitor have limited hardware capabilities. For improved diagnostic capacity, it would be helpful to detect arrhythmic signals automatically. In this study, a novel approach is presented as a candidate solution for these issues.

    METHODS: A convolutional auto-encoder (CAE) based nonlinear compression structure is implemented to reduce the signal size of arrhythmic beats. Long-short term memory (LSTM) classifiers are employed to automatically recognize arrhythmias using ECG features, which are deeply coded with the CAE network.

    RESULTS: Based upon the coded ECG signals, both storage requirement and classification time were considerably reduced. In experimental studies conducted with the MIT-BIH arrhythmia database, ECG signals were compressed by an average 0.70% percentage root mean square difference (PRD) rate, and an accuracy of over 99.0% was observed.

    CONCLUSIONS: One of the significant contributions of this study is that the proposed approach can significantly reduce time duration when using LSTM networks for data analysis. Thus, a novel and effective approach was proposed for both ECG signal compression, and their high-performance automatic recognition, with very low computational cost.

    MeSH terms: Algorithms; Arrhythmias, Cardiac/classification; Arrhythmias, Cardiac/diagnosis*; Electrocardiography/methods*; Humans; Pattern Recognition, Automated; Signal Processing, Computer-Assisted*; Software; Reproducibility of Results; Electrocardiography, Ambulatory; Databases, Factual; Neural Networks (Computer)*; Principal Component Analysis; Data Compression/methods*
  7. Cheong JKK, Yap S, Ooi ET, Ooi EH
    Comput Methods Programs Biomed, 2019 Jul;176:17-32.
    PMID: 31200904 DOI: 10.1016/j.cmpb.2019.04.028
    BACKGROUND AND OBJECTIVES: Recently, there have been calls for RFA to be implemented in the bipolar mode for cancer treatment due to the benefits it offers over the monopolar mode. These include the ability to prevent skin burns at the grounding pad and to avoid tumour track seeding. The usage of bipolar RFA in clinical practice remains uncommon however, as not many research studies have been carried out on bipolar RFA. As such, there is still uncertainty in understanding the effects of the different RF probe configurations on the treatment outcome of RFA. This paper demonstrates that the electrode lengths have a strong influence on the mechanics of bipolar RFA. The information obtained here may lead to further optimization of the system for subsequent uses in the hospitals.

    METHODS: A 2D model in the axisymmetric coordinates was developed to simulate the electro-thermophysiological responses of the tissue during a single probe bipolar RFA. Two different probe configurations were considered, namely the configuration where the active electrode is longer than the ground and the configuration where the ground electrode is longer than the active. The mathematical model was first verified with an existing experimental study found in the literature.

    RESULTS: Results from the simulations showed that heating is confined only to the region around the shorter electrode, regardless of whether the shorter electrode is the active or the ground. Consequently, thermal coagulation also occurs in the region surrounding the shorter electrode. This opened up the possibility for a better customized treatment through the development of RF probes with adjustable electrode lengths.

    CONCLUSIONS: The electrode length was found to play a significant role on the outcome of single probe bipolar RFA. In particular, the length of the shorter electrode becomes the limiting factor that influences the mechanics of single probe bipolar RFA. Results from this study can be used to further develop and optimize bipolar RFA as an effective and reliable cancer treatment technique.

    MeSH terms: Blood/radiation effects; Body Temperature; Computer Simulation*; Electric Conductivity; Electrodes*; Electrophysiology; Hot Temperature*; Humans; Liver/radiation effects*; Liver Neoplasms/radiotherapy; Perfusion; Cell Death
  8. Faust O, Razaghi H, Barika R, Ciaccio EJ, Acharya UR
    Comput Methods Programs Biomed, 2019 Jul;176:81-91.
    PMID: 31200914 DOI: 10.1016/j.cmpb.2019.04.032
    BACKGROUND AND OBJECTIVE: Sleep is an important part of our life. That importance is highlighted by the multitude of health problems which result from sleep disorders. Detecting these sleep disorders requires an accurate interpretation of physiological signals. Prerequisite for this interpretation is an understanding of the way in which sleep stage changes manifest themselves in the signal waveform. With that understanding it is possible to build automated sleep stage scoring systems. Apart from their practical relevance for automating sleep disorder diagnosis, these systems provide a good indication of the amount of sleep stage related information communicated by a specific physiological signal.

    METHODS: This article provides a comprehensive review of automated sleep stage scoring systems, which were created since the year 2000. The systems were developed for Electrocardiogram (ECG), Electroencephalogram (EEG), Electrooculogram (EOG), and a combination of signals.

    RESULTS: Our review shows that all of these signals contain information for sleep stage scoring.

    CONCLUSIONS: The result is important, because it allows us to shift our research focus away from information extraction methods to systemic improvements, such as patient comfort, redundancy, safety and cost.

    MeSH terms: Algorithms; Electrocardiography; Electroencephalography; Electrooculography; Heart Rate*; Humans; Medical Informatics; Signal Processing, Computer-Assisted*; Sleep Stages*; Normal Distribution; Polysomnography*; Internet
  9. Daood U, Parolia A, Elkezza A, Yiu CK, Abbott P, Matinlinna JP, et al.
    Dent Mater, 2019 09;35(9):1264-1278.
    PMID: 31201019 DOI: 10.1016/j.dental.2019.05.020
    OBJECTIVE: To analyze effect of NaOCl+2% quaternary ammonium silane (QAS)-containing novel irrigant against bacteria impregnated inside the root canal system, and to evaluate its antimicrobial and mechanical potential of dentine substrate.

    METHODS: Root canal was prepared using stainless steel K-files™ and ProTaper™ and subjected to manual and ultrasonic irrigation using 6% NaOCl+2% CHX, 6% NaOCl+2% QAS and saline as control. For confocal-microscopy, Raman spectroscopy and SEM analysis before and after treatment, Enterococcus faecalis cultured for 7 days. Raman spectroscopy analysis was done across cut section of gutta percha/sealer-dentine to detect resin infiltration. Indentation of mechanical properties was evaluated using a Berkovich indenter. The contact angle of irrigants and surface free energy were evaluated. Mineralization nodules were detected through Alazarin red after 14 days.

    RESULTS: Control biofilms showed dense green colonies. Majority of E. faecalis bacteria were present in biofilm fluoresced red in NaOCl+2% QAS group. There was reduction of 484cm-1 Raman band and its intensity reached lowest with NaOCl+2% QAS. There was an increase in 1350-1420cm-1 intensity in the NaOCl+2% CHX groups. Gradual decrease in 1639cm-1 and 1609cm-1 Raman signal ratios were seen in the resin-depth region of 17μm>, 14.1μm> and 13.2μm for NaOCl+2% QAS, NaOCl+2% CHX and control groups respectively. All obturated groups showed an intact sealer/dentine interface with a few notable differences. 0.771 and 83.5% creep indentation distance for NaOCl+2% QAS ultrasonic groups were observed. Highest proportion of polar component was significantly found in the NaOCl+2% QAS groups which was significantly higher as compared to other groups. Mineralized nodules were increased in NaOCl+2% QAS.

    SIGNIFICANCE: Favorable antimicrobial and endodontic profile of the NaOCl+2% QAS solution might suggest clinical use for it for more predictable reduction of intracanal bacteria.

    MeSH terms: Dental Pulp Cavity; Dentin; Root Canal Irrigants*; Silanes; Enterococcus faecalis; Biofilms; Ammonium Compounds*
  10. Tsirou E, Grammatikopoulou MG, Theodoridis X, Gkiouras K, Petalidou A, Taousani E, et al.
    J Acad Nutr Diet, 2019 08;119(8):1320-1339.
    PMID: 31201104 DOI: 10.1016/j.jand.2019.04.002
    BACKGROUND: Medical nutrition therapy is the cornerstone of gestational diabetes mellitus treatment. However, guidelines often present contradictory guidance to health care practitioners.

    OBJECTIVE: To systematically review and critically appraise medical nutrition therapy guidelines for treating patients with gestational diabetes mellitus.

    DESIGN: We searched Medline, the Cochrane Library, Guidelines International Network, and Google Scholar to retrieve clinical practice guidelines (CPGs) for medical nutrition therapy in gestational diabetes mellitus from professional or governmental organizations, published in English, between January 1, 2007, and November 24, 2018. CPGs were reviewed and appraised using the Appraisal of Guidelines, Research, and Evaluation II instrument.

    RESULTS: Of 1,286 retrieved articles, 21 CPGs fulfilled the inclusion criteria. CPGs of the Academy of Nutrition and Dietetics, Diabetes Canada, and Malaysia Health Technology Assessment Section received the greatest overall scores and the highest scores concerning rigor of recommendations development. Many CPGs failed to involve multidisciplinary teams in their development, including patients, and often, dietitians. Applicability of the recommendations was low, lacking facilitators and tools to enhance implementation. Many CPGs demonstrated low editorial independence by failing to disclose funding and competing interests. More medical nutrition therapy recommendations were incorporated in the Academy of Nutrition and Dietetics and Malaysia Health Technology Assessment Section CPGs. The Malaysia Health Technology Assessment Section, Diabetes Canada, Academy of Nutrition and Dietetics, and Endocrine Society guidelines were recommended by the review panel herein without modifications. Overall, the CPGs suggested the consumption of adequate protein and the selection of foods with low glycemic index, divided into three main meals and two to four snacks. Weight gain recommendations were mostly based on the Institute of Medicine body mass index thresholds.

    CONCLUSIONS: With few exceptions, the main developmental limitations of the appraised CPGs involved low rigor of recommendations development, lack of multidisciplinary stakeholder involvement, low applicability, and inadequate editorial independence. This indicates a need for developing more clear, unbiased, practical, and evidence-based CPGs.

    MeSH terms: Female; Humans; Pregnancy; Prenatal Care/standards*; Diabetes, Gestational/diet therapy*; Practice Guidelines as Topic*; Nutrition Policy*; Maternal Nutritional Physiological Phenomena; Nutrition Therapy/standards*
  11. Ibrahim I, Lim HN, Huang NM
    Mikrochim Acta, 2019 06 14;186(7):452.
    PMID: 31201543 DOI: 10.1007/s00604-019-3547-x
    A multi-functional hybrid of cellulose acetate with cadmium sulfide and Methylene blue (CA/CdS/MB) in a bead composition was synthesized and investigated as a photosensor-adsorbent for the rapid, selective, and sensitive detection, and adsorption of Cu(II) ions. These hybrid CA-modified beads are composed of multiple adsorption active sites and possess a surface area of 58 cm2 g-1. They are an efficient adsorbent with a maximum adsorption capacity of 0.57 mg g-1. Photoelectrochemical (PEC) detection of Cu(II) was accomplished by modifying the beads on a glassy carbon electrode. The beads containing 20 mmol of sulfur displayed the widest linear analytical range (0.1-290 nM) and the lowest detection limit (16.9 nM) for Cu(II) with high selectivity and reliable reproducibility. The successful application of the beads has provided a new insight for the selection of a responsive photoactive material for a PEC assay, as well as an effective adsorbent material for Cu(II) ions. Graphical abstract A multi-functional hybrid of cellulose acetate with cadmium sulfide and Methylene blue (CA/CdS/MB) in a bead composition was synthesized and investigated as a photosensor-adsorbent for the rapid, selective and sensitive detection and adsorption of Cu(II) ions.
    MeSH terms: Adsorption; Carbon; Cellulose; Electrodes; Methylene Blue; Phosphates; Sulfides; Sulfur; Reproducibility of Results; Cadmium Compounds; Catalytic Domain; Limit of Detection
  12. Ng CC, Boyce AN, Abas MR, Mahmood NZ, Han F
    Environ Monit Assess, 2019 Jun 14;191(7):434.
    PMID: 31201562 DOI: 10.1007/s10661-019-7573-2
    Over the years, ethylene-diamine-tetra-acetate (EDTA) has been widely used for many purposes. However, there are inadequate phytoassessment studies conducted using EDTA in Vetiver grass. Hence, this study evaluates the phytoassessment (growth performance, accumulation trends, and proficiency of metal uptake) of Vetiver grass, Vetiveria zizanioides (Linn.) Nash in both single and mixed heavy metal (Cd, Pb, Cu, and Zn)-disodium EDTA-enhanced contaminated soil. The plant growth, metal accumulation, and overall efficiency of metal uptake by different plant parts (lower root, upper root, lower tiller, and upper tiller) were thoroughly examined. The relative growth performance, metal tolerance, and phytoassessment of heavy metal in roots and tillers of Vetiver grass were examined. Metals in plants were measured using the flame atomic absorption spectrometry (F-AAS) after acid digestion. The root-tiller (R/T) ratio, biological concentration factor (BCF), biological accumulation coefficient (BAC), tolerance index (TI), translocation factor (TF), and metal uptake efficacy were used to estimate the potential of metal accumulation and translocation in Vetiver grass. All accumulation of heavy metals were significantly higher (p < 0.05) in both lower and upper roots and tillers of Vetiver grass for Cd + Pb + Cu + Zn + EDTA treatments as compared with the control. The single Zn + EDTA treatment accumulated the highest overall total amount of Zn (8068 ± 407 mg/kg) while the highest accumulation for Cu (1977 ± 293 mg/kg) and Pb (1096 ± 75 mg/kg) were recorded in the mixed Cd + Pb + Cu + Zn + EDTA treatment, respectively. Generally, the overall heavy metal accumulation trends of Vetiver grass were in the order of Zn > Cu > Pb > Cd for all treatments. Furthermore, both upper roots and tillers of Vetiver grass recorded high tendency of accumulation for appreciably greater amounts of all heavy metals, regardless of single and/or mixed metal treatments. Thus, Vetiver grass can be recommended as a potential phytoextractor for all types of heavy metals, whereby its tillers will act as the sink for heavy metal accumulation in the presence of EDTA for all treatments.
    MeSH terms: Biological Factors; Cadmium; Edetic Acid; Environmental Pollution; Ethylenes; Lead; Plants; Soil; Spectrophotometry, Atomic; Zinc; Metals, Heavy; Plant Development
  13. Ang TK, Safuan HM, Sidhu HS, Jovanoski Z, Towers IN
    Bull Math Biol, 2019 07;81(7):2748-2767.
    PMID: 31201660 DOI: 10.1007/s11538-019-00627-8
    The present paper studies a predator-prey fishery model which incorporates the independent harvesting strategies and nonlinear impact of an anthropogenic toxicant. Both fish populations are harvested with different harvesting efforts, and the cases for the presence and non-presence of harvesting effort are discussed. The prey fish population is assumed to be infected by the toxicant directly which causes indirect infection to predator fish population through the feeding process. Each equilibrium of the proposed system is examined by analyzing the respective local stability properties. Dynamical behavior and bifurcations are studied with the assistance of threshold conditions influencing the persistence and extinction of both predator and prey. Bionomic equilibrium solutions for three possible cases are investigated with certain restrictions. Optimal harvesting policy is explored by utilizing the Pontryagin's Maximum Principle to optimize the profit while maintaining the sustainability of the marine ecosystem. Bifurcation analysis showed that the harvesting parameters are the key elements causing fishery extinction. Numerical simulations of bionomic and optimal equilibrium solutions showed that the presence of toxicant has a detrimental effect on the fish populations.
    MeSH terms: Animals; Computer Simulation; Conservation of Natural Resources; Fisheries*; Fishes*; Models, Biological*; Population Dynamics; Predatory Behavior; Hazardous Substances/toxicity; Ecosystem; Food Chain; Mathematical Concepts
  14. Aung SW, Abu Kasim NH, Ramasamy TS
    Methods Mol Biol, 2019;2045:323-335.
    PMID: 31201682 DOI: 10.1007/7651_2019_242
    The therapeutic potential of human mesenchymal stromal stem cells (hMSCs) for cell-based therapeutic is greatly influenced by the in vitro culture condition including the culture conditions. Nevertheless, there are many technical challenges needed to be overcome prior to the clinical use including the quantity, quality, and heterogeneity of the cells. Therefore, it is necessary to develop a stem cell culture procedure or protocol for cell expansion in order to generate reproducible and high-quality cells in accordance with good manufacturing practice for clinical and therapeutic purposes. Here we assessed the MSCs characteristic of human Wharton's jelly mesenchymal stromal cells in in vitro culture according to the criteria established by the International Society for Cellular Therapy. Besides, the viability of the WJMSCs was determined in order to increase the confidence that the cells are employed to meet the therapeutic efficacy.
    MeSH terms: beta-Galactosidase/metabolism; Cell Cycle/genetics; Cell Differentiation/drug effects; Cell Separation/methods; Cells, Cultured; Flow Cytometry; Humans; Osteocytes/cytology; Osteocytes/metabolism; Umbilical Cord/cytology; Cryopreservation; Immunophenotyping; Cell Aging/physiology; Adipocytes/cytology; Adipocytes/metabolism; Cell Culture Techniques/methods*; Cell Lineage/drug effects; Chondrocytes/cytology; Chondrocytes/metabolism; Cell Proliferation; Workflow; Mesenchymal Stromal Cells/cytology*; Mesenchymal Stromal Cells/drug effects; Mesenchymal Stromal Cells/metabolism; Wharton Jelly/cytology*; Wharton Jelly/transplantation
  15. Mousavi Z, Yousefi Rezaii T, Sheykhivand S, Farzamnia A, Razavi SN
    J Neurosci Methods, 2019 08 01;324:108312.
    PMID: 31201824 DOI: 10.1016/j.jneumeth.2019.108312
    Using a smart method for automatic diagnosis in medical applications, such as sleep stage classification is considered as one of the important challenges of the last few years which can replace the time-consuming process of visual inspection done by specialists. One of the problems regarding the automatic diagnosis of sleep patterns is extraction and selection of discriminative features generally demanding high computational burden. This paper provides a new single-channel approach to automatic classification of sleep stages from EEG signal. The main idea is to directly apply the raw EEG signal to deep convolutional neural network, without involving feature extraction/selection, which is a challenging process in the previous literature. The proposed network architecture includes 9 convolutional layers followed by 2 fully connected layers. In order to make the samples of different classes balanced, we used a preprocessing method called data augmentation. The simulation results of the proposed method for classification of 2 to 6 classes of sleep stages show the accuracy of 98.10%, 96.86%, 93.11%, 92.95%, 93.55% and Cohen's Kappa coefficient of 0.98%, 0.94%, 0.90%, 0.86% and 0.89%, respectively. Furthermore, comparing the obtained results with the state-of-the-art methods reveals the performance improvement of the proposed sleep stage classification in terms of accuracy and Cohen's Kappa coefficient.
    MeSH terms: Electroencephalography/methods*; Humans; Signal Processing, Computer-Assisted; Sleep Stages/physiology*
  16. Moriya S, Tan VP, Yee AK, Parhar IS
    Neurosci Lett, 2019 08 24;708:134330.
    PMID: 31201839 DOI: 10.1016/j.neulet.2019.134330
    In Parkinson's disease (PD), several genes have been identified as the PD-related genes, however, the regulatory mechanisms of these gene expressions have not been fully identified. In this study, we investigated the effect of inflammation, one of the major risk factors in PD on expressions of the PD-related genes. Lipopolysaccharide (LPS) was intraperitoneally administered to mature male zebrafish and gene expressions in the brains were examined by real-time PCR. In the inflammation-related genes, expressions of tnfb, il1b and il6 were increased at 2 days post administration in the 10 μg group, and tnfb expression was also increased at 4 days post administration in the 1 μg and 10 μg group. In the PD-related genes, pink1 expression was significantly decreased at 4 days, atp13a2 expression was significantly increased at 7 days, and uchl1 expression was significantly decreased at 7 days. This suggests that pink1, atp13a2 and uchl1 expressions are regulated by inflammation, and this regulatory mechanism might be involved in the progress of PD.
    MeSH terms: Animals; Brain/metabolism*; Encephalitis/genetics; Encephalitis/metabolism*; Proton-Translocating ATPases/metabolism*; Lipopolysaccharides/genetics; Lipopolysaccharides/pharmacology*; Male; Parkinson Disease/genetics; Zebrafish; Gene Expression; Protein-Serine-Threonine Kinases/genetics; Protein-Serine-Threonine Kinases/metabolism*; Zebrafish Proteins/genetics; Zebrafish Proteins/metabolism*; Ubiquitin Thiolesterase/genetics; Ubiquitin Thiolesterase/metabolism*
  17. Tan CH, Wong KY, Chong HP, Tan NH, Tan KY
    J Proteomics, 2019 08 30;206:103418.
    PMID: 31201947 DOI: 10.1016/j.jprot.2019.103418
    The Philippine cobra, Naja philippinensis, is a WHO Category 1 venomous snake of medical importance responsible for fatal envenomation in the northern Philippines. To elucidate the venom proteome and pathophysiology of envenomation, N. philippinensis venom proteins were decomplexed with reverse-phase high-performance liquid chromatography, and protein fractions were subsequently digested with trypsin, followed by nano-liquid chromatography-tandem mass spectrometry analysis and data mining. Three-finger toxins (3FTX, 66.64% of total venom proteins) and phospholipases A2 (PLA2, 22.88%) constitute the main bulk of venom proteome. Other proteins are present at low abundances (<4% each); these include metalloproteinase, serine protease, cobra venom factor, cysteine-rich secretory protein, vespryn, phosphodiesterase, 5' nucleotidase and nerve growth factor. In the three-finger toxin family, the alpha-neurotoxins comprise solely short neurotoxins (SNTX, 44.55%), supporting that SNTX is the principal toxin responsible for neuromuscular paralysis and lethality reported in clinical envenomation. Cytotoxins (CTX) are the second most abundant 3FTX proteins in the venom (21.31%). The presence of CTX correlates with the venom cytotoxic effect, which is more prominent in murine cells than in human cells. From the practical standpoint, SNTX-driven neuromuscular paralysis is significant in N. philippinensis envenomation. Antivenom production and treatment should be tailored accordingly to ensure effective neutralization of SNTX. BIOLOGICAL SIGNIFICANCE: The venom proteome of Naja philippinensis, the Philippine cobra, is unravelled for the first time. Approximately half the protein bulk of the venom is made up of short neurotoxins (44.55% of the total venom proteins). As the only alpha-neurotoxins present in the venom, short neurotoxins are the causative toxins of the post-synaptic blockade and fast-onset neuromuscular paralysis in N. philippinensis envenomation. A substantial amount of cytotoxins (21.31%) was also detected in N. philippinensis venom, supporting that the venom can be cytotoxic although the effect is much weaker in human cells compared to murine cells. The finding is consistent with the low incidence of local tissue necrosis in N. philippinensis envenomation, although this does not negate the need for monitoring and care of bite wound in the patients.
    MeSH terms: Animals; Asia, Southeastern/epidemiology; Cells, Cultured; Cobra Neurotoxin Proteins/analysis; Cobra Neurotoxin Proteins/metabolism*; Humans; Neurotoxins/analysis; Neurotoxins/metabolism; Severity of Illness Index; Snake Bites/etiology; Snake Bites/epidemiology*; Snake Bites/therapy; Neurotoxicity Syndromes/etiology; Neurotoxicity Syndromes/epidemiology*; Neurotoxicity Syndromes/pathology; Neurotoxicity Syndromes/therapy; Proteome/analysis; Proteome/metabolism; Proteomics/methods*; Mice
  18. Sherlala AIA, Raman AAA, Bello MM, Buthiyappan A
    J Environ Manage, 2019 Sep 15;246:547-556.
    PMID: 31202019 DOI: 10.1016/j.jenvman.2019.05.117
    Chitosan-magnetic-graphene oxide (CMGO) nanocomposite was prepared for arsenic adsorption. The nanocomposite was characterized through BET, FTIR, FESEM, EDX, and VSM analyses. These characterizations confirmed the formation of CMGO nanocomposites with high specific surface area (152.38 m2/g) and excellent saturation magnetization (49.30 emu/g). Batch adsorption experiments were conducted to evaluate the performance of the nanocomposite in the adsorption of arsenic from aqueous solution. The effects of operational parameters, adsorption kinetic, equilibrium isotherm and thermodynamics were evaluated. The removal efficiency of arsenic increased with increasing adsorbent dosage and contact time. However, the effect of pH followed a different pattern, with the removal efficiency increasing from acidic to neutral pH, and then decreasing at alkaline conditions. The highest adsorption capacity (45 mg/g) and removal efficiency (61%) were obtained at pH 7.3. The adsorption kinetic followed a pseudo-second-order kinetic model. The analysis of adsorption isotherm shows that the adsorption data fitted well to Langmuir isotherm model, indicating a homogeneous process. Thermodynamic analysis shows that the adsorption of As(III) is exothermic and spontaneous. The superparamagnetic properties of the nanocomposite enabled the separation and recovery of the nanoparticles using an external magnetic field. Thus, the developed nanocomposite has a potential for arsenic remediation.
    MeSH terms: Adsorption; Arsenic*; Graphite*; Hydrogen-Ion Concentration; Oxides; Water Pollutants, Chemical*; Chitosan*; Nanocomposites*
  19. Kumaran A, Chan A, Yong K, Shen S
    Orbit, 2019 Apr;38(2):95-102.
    PMID: 29482415 DOI: 10.1080/01676830.2018.1441316
    AIM: To describe differences in the deep lateral orbital wall (specifically, trigone) between Chinese, Malay, Indian and Caucasian subjects Methods: Single-centre retrospective Computed Tomogram (CT)-based study; 20 subjects of each ethnicity were used from existing databases, matched for gender, average age and laterality. Subjects below 16 years of age were excluded. DICOM image viewing software CARESTREAM Vue PACS (Carestream Health Inc., USA) and OsiriX version 7.5 (Pixmeo., Switzerland) were used to measure deep lateral wall length, thickness and volume, as well as orbital depth and statistical analyses performed using Statistical Package for Social Sciences version 21 (IBM, USA).

    RESULTS: In each group, there were 12 males (60%) and average age was not significantly different (p = 0.682-0.987). Using Chinese subjects as a reference, in Chinese, Malay, Indian and Caucasian subjects, mean trigone thickness was 13.68, 14.02, 11.60 (p 

    MeSH terms: Adolescent; Adult; Aged; Ethnic Groups*; Female; Humans; India/epidemiology; Malaysia/epidemiology; Male; Middle Aged; Orbit/anatomy & histology*; Orbit/surgery; Retrospective Studies; Tomography, X-Ray Computed/methods; Decompression, Surgical*; European Continental Ancestry Group/ethnology; Asian Continental Ancestry Group/ethnology; Graves Ophthalmopathy/surgery; Young Adult
  20. Aithal AP, Bairy LK, Seetharam RN, Rao MK
    J Cell Biochem, 2019 08;120(8):13026-13036.
    PMID: 30873677 DOI: 10.1002/jcb.28573
    BACKGROUND: To evaluate the antimutagenic potential of combination treatment of human bone marrow-derived mesenchymal stromal cells (BM-MSCs) and silymarin and its effect on hepatocyte growth factor levels in CCl4 induced hepatotoxicity in Wistar rats.

    METHODS: Hepatotoxicity was induced in adult female Wistar rats using carbon tetrachloride (CCl4 ). Thirty-six rats were randomly divided into six groups with six rats in each group: Group 1 (normal control group), Group 2 (received only CCl 4 ), Group 3 (CCl 4 +low dose BM-MSCs), Group 4 (CCl 4 +high dose BM-MSCs), Group 5 (CCl 4  + silymarin), Group 6 (CCl 4 +silymarin+high dose BM-MSCs). Thirty days after the treatment, blood samples were collected for hepatocyte growth factor estimation. The rats were then killed, bone marrow was extracted for chromosomal aberration assay. Liver tissue was processed for evaluating the DNA fragmentation assay, histopathology, and scanning electron microscopy study.

    RESULTS: Combination treatment of silymarin and high dose BM-MSCs significantly (P 

    MeSH terms: Animals; Bone Marrow Cells/cytology; Carbon Tetrachloride/toxicity; Cells, Cultured; Combined Modality Therapy; Disease Models, Animal; Female; Humans; Liver/drug effects; Liver/metabolism; Liver/pathology; Microscopy, Electron, Scanning; Silymarin/pharmacology*; Rats, Wistar; Hepatocyte Growth Factor/blood*; Protective Agents/pharmacology; Mesenchymal Stem Cell Transplantation/methods*; DNA Fragmentation/drug effects*; Drug-Induced Liver Injury/etiology; Drug-Induced Liver Injury/genetics; Drug-Induced Liver Injury/therapy*; Mesenchymal Stromal Cells/cytology
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