In this study, a total of 147 soil actinobacterial strains were screened for their ability to inhibit response of Chromobacterium violaceum CV026 to short chain N-acyl homoserine lactone (AHL) which is a quorum sensing molecule. Of these, three actinobacterial strains showed positive for violacein inhibition. We further tested these strains for the inhibition of Pseudomonas aeruginosa PAO1 quorum sensing-regulated phenotypes, namely, swarming and pyocyanin production. The three strains were found to inhibit at least one of the quorum sensing-regulated phenotypes of PAO1. Phylogenetic analysis of the 16S rRNA gene sequences indicated that these strains belong to the genera Micromonospora, Rhodococcus and Streptomyces. This is the first report presenting quorum quenching activity by a species of the genus Micromonospora. Our data suggest that Actinobacteria may be a rich source of active compounds that can act against bacterial quorum sensing system.
Oil palm fibres are easy to degrade, eco-friendly in nature and once composted, they can be categorized under nutrient-enriched biocompost. Biocompost is not only a good biofertilizer but also a good biocontrol agent against soil-borne pathogens. In this research, experimental works on the composting of empty fruit bunches (EFB) from the oil palm industry were conducted using two potential Trichoderma strains. Analysis of pH initially found the soils to be slightly acidic. However, after composting, the soils were found to be alkaline. Trichoderma propagules increased by 72% in the soils compared to other fungi. Soil electrical conductivity was found to be 50.40 μS/cm for compost A, 42.10 μS/cm for compost B and 40.11 μS/cm for the control. The highest C:N ratio was obtained for compost A at 3.33, followed by compost B at 2.79, and then the control at 1.55. The highest percentages of nitrogen (N), phosphorus (P), and potassium (K) were found in compost A (0.91:2.13:6.68), which was followed by compost B (0.46:0.83:5.85) and then the control (0.32:0.26:5.76). Thus, the biocomposting of oil palm fibres shows great potential for enhancing soil micronutrient, plant growth performance, and crop yield production.
Various prevalence studies on Leptospira in animals and humans, as well as environmental samples, had been conducted worldwide, including Malaysia. However, limited studies have been documented on the presence of pathogenic, intermediate, and saprophytic Leptospira in selected animals and environments. This study was therefore conducted to detect Leptospira spp. in rats, soil, and water from urban areas of Sarawak using the polymerase chain reaction (PCR) method. A total of 107 rats, 292 soil samples, and 324 water samples were collected from April 2014 to February 2015. Pathogenic Leptospira was present in 5.6% (6/107) of rats, 11.6% (34/292) of soil samples, and 1.9% (6/324) of water samples. Intermediate Leptospira was present in 2.7% (8/292) of soil samples and 1.9% (6/324) of water samples. Saprophytic Leptospira was present in 10.3% (11/107) of rats, 1.4% (4/292) of soil samples, and 0.3% (1/324) of water samples. From this study, 76 Leptospira spp. were isolated. Based on DNA sequencing, the dominant Leptospira spp. circulating in urban areas of Sarawak are pathogenic Leptospira noguchii, intermediate Leptospira wolffii serovar Khorat, and saprophytic Leptospira meyeri, respectively. Overall, this study provided important surveillance data on the prevalence of Leptospira spp. from rats and the environment, with dominant local serovars in urban areas of Sarawak.
The environmental impacts with regard to agro-based biofuel production have been associated with the impact of greenhouse gas (GHG) emissions. In this study, field GHG emissions during plantation stage of palm oil-based biofuel production associated with land use changes for oil palm plantation development have been evaluated. Three different sites of different land use changes prior to oil palm plantation were chosen; converted land-use (large and small-scales) and logged-over forest. Field sampling for determination of soil N-mineralisation and soil organic carbon (SOC) was undertaken at the sites according to the age of palm, i.e. <5 years (immature), 5-20 and >21 years (mature oil palms). The field data were incorporated into the estimation of nitrous oxide (N2O) and the resulting CO2-eq emissions as well as for estimation of carbon stock changes. Irrespective of the land conversion scenarios, the nitrous oxide emissions were found in the range of 6.47-7.78 kg N2O-N/ha resulting in 498-590 kg CO2-eq/ha. On the other hand, the conversion of tropical forest into oil palm plantation has resulted in relatively higher GHG emissions (i.e. four times higher and carbon stock reduction by >50%) compared to converted land use (converted rubber plantation) for oil palm development. The conversion from previously rubber plantation into oil palm plantation would increase the carbon savings (20% in increase) thus sustaining the environmental benefits from the palm oil-based biofuel production.
In agricultural systems, animals play a very important multifunctional role for developing communities
throughout the world. This is reflected in the generation of value-added products like meat, milk and eggs for food security; socio-economic benefits like increased income, security and survival, and an infinite variety of services such as the supply of draught power and dung for soil fertility. However, and despite this importance, the situation is awesome since the projected total meat and milk consumption levels in 2020 are far in excess of anticipated supply, and projections of both meat and milk will have to be doubled by 2050 to meet human requirements. Strategies for productivity growth from animals are therefore urgent, and are discussed in the context of the scenario of waning agriculture, extreme poverty and hunger, food crisis, the current contributions from the components of the animal industries, prevailing constraints, opportunities and strategies for improved production. Current trends suggest that the non-ruminant pig and poultry industries will continue to contribute the major share of meat and all of egg production to meet projected human needs. With ruminants by comparison, overall meat production continues to come mainly from the slaughter of numbers. Strategic opportunities exist for maximising productivity in improved production systems. These include targeting rainfed areas, development of small farms, integrated crop-animal systems, intensive application of productivity-enhancing technologies, promoting intensive use of crop residues and expanding the R&D frontiers with interdisciplinarity and farming
systems perspectives. The issues, together with increased investments and institutional commitment, provide for expanded animal production systems and productivity which can forcefully impact on improved human welfare in Asia in the immediate tomorrow.
The increased human demand for animal proteins in Malaysia is led by several factors: population growth, urbanisation, income growth and changing consumer preferences. Meeting the projected increased demand in the future is an awesome and challenging task. Presently, the non-ruminant poultry and pig industries, mainly private sector led, make the most significant contribution to total animal protein supplies, and inefficient ruminant production systems lag well behind. The strategy for promoting productivity growth to increase animal protein supplies from ruminants requires concerted efficient natural resource management that can target specific production systems. Two distinct economic opportunities are the development of oil palm-based cattle and goat production. The value addition to oil palm cultivation due to the beneficial crop-animal-soil interactions are enormous. The prerequisites are inter-disciplinary efforts, holistic systems, participatory community-based research and development that are needs-based and address constraints, increased research investments, institutional commitment and a policy environment that can enhance total factor productivity in the future.
The 2004 Banda Aceh earthquake and ensuing Andaman mega tsunami that killed a quarter million people worldwide is a wake-up call to many. Active research was initiated in Universiti Sains Malaysia (USM) immediately after the infamous event with the aims to help develop human capacity and resources, and to mitigate any future earthquake and tsunami. The Disaster Research Nexus (DRN) was formed recently within the School of Civil Engineering, USM, to facilitate active collaborative research on earthquakes and tsunamis, as well as on other natural disasters, such as landslides. This paper begins with an introduction to DRN. This is followed by a description of some research achievements undertaken by DRN staff. A concise exposition on the tsunami simulation model TUNA developed by the authors and its application to the 2004 Andaman tsunami are given to illustrate the capability of TUNA. The role of mangrove in reducing the impact of tsunami is then modelled. Tsunami may inundate coastal plain with large quantity of saline water, changing the salinity regimes in the soil and inducing vegetative succession changes. A model called MANHAM was developed to simulate the salinity changes and its associated vegetative evolution to assist in the rehabilitation of vegetation destroyed by tsunami. Meanwhile, an earthquake risk analysis for the Upper Pandas Dam in Sabah is then presented, and this is followed by a model estimation of tsunami forces on the coastal structures. The main objective of this paper is to reach out to research scientists and onsite risk reduction professionals to collaborate towards the development of a vibrant research culture to face future natural disasters such as earthquakes and tsunamis. It is hoped that DRN will move forward to further enhance active collaborations with other research and operational institutions worldwide towards developing earthquake and tsunami resilient communities.
Ground water contain natural radioactivity associated with uranium and thorium that present naturally in rocks and soils. Humans may be exposed to the emission of energetic alpha particle from supported radon decaying process in this water when it is inhaled or ingested. Assessment of supported radon in ground water was carried out using fourteen ground water samples from Cameron Highlands. The measurement was accomplished by degassing the water samples using pump and then allowing the gas to flow into specially constructed 0.0191 m8 metal chamber. The activity concentration of supported radon in water sample was measured using continuous radon monitor inside the radon chamber. Measurement was carried out at one hour interval for twenty four hours. The hourly supported radon concentration was found to stabilize after about 8 hours. The stabilized concentration was used to determine supported radon activity concentration in the water samples. Results of the study show that depending on the sampling location, the activity concentrations of supported radon are in the range from 0.09 - 0.48 Bq/L which is lower than the activity concentration of radon in drinking water as proposed by USEPA (11 Bq/L).
There are many essential and non-essential elements including metals and radionuclides present in vegetables. Howeve r, the accumulation of the several metals and radionuclides might cause the contamination to vegetables itself. Green m ustard (Brasissca rapa var. Parachinesis L.) was selected to represent the vegetable in this study. Objectives of this stud y are to determine the concentration of metals and radionuclides in the samples and to calculate the enrichment factor ( EF) and also to estimate the uptake, base on biological accumulation coefficient (BAC), for the various parts of selecte d vegetables. Three farmlands in the Cameron Highlands were studied namely Bharat, Kg Raja and Bertam area. The g reen mustard and soil samples were collected during the harvest season. Samples were dried, ground and sieved prior t o analysis. Analyses for both samples were done by using X-rays Fluorescence Spectroscopy (XRF) to measure the conc entration of Fe, Zn, Hg, U and Th. The concentration of all elements in the soils is lower than their concentration in the control soil, except for Zn, U and Th. The concentration of all elements in Green Mustard is lower than their concentrat ion in the soil where it was grown. The EF values in the Brasissca rapa var. Parachinesis L are lower than 2 except for U and Th, indicating some degree of contamination due to anthropogenic activities or naturally origin. The BAC values show that Zn and Hg were accumulated in the green mustard, depending on where the plant grows.
Taman Negara is a famous tourism destination for nature lover in Malaysia. The area is well kept from human activities and disturbances. Since there is no data for human exposure to natural radiation, there is a need to do this study. It will give a baseline data for surface dose and radionuclide concentrations and one can estimate the external hazards index for the visitor to this unexplored area, i.e. UiTM-Perhilitan research station, Kuala Keniam, Taman Negara, Malaysia. The surface dose rate measurements were done in-situ using portable radiation survey meter at the surface and 1 m above the surface. The top soil samples were taken using hand auger up to 15 cm depth at nine locations around research station. Samples were brought back to the UiTM laboratory in Shah Alam, dried, ground to powder form, and sieved using 250 μm sieve. Then the uranium and thorium concentrations were analyzed using Energy Dispersive X-Ray Fluorescence (EDXRF).The mean value for surface dose rates on surface were 0.164 μSv/hr while the mean value for surface dose rates on 1m above the surface were 0.161 μSv/hr. The mean concentration of thorium was 2.62μg/g while the mean concentration of uranium was 0.61μg/g.
Chemical composition of fine (PM2.5) aerosol samples collected for the 5 years period (2001- 2005) using Gent Stacked filter unit sampler at Klang Valley (3 o 10 ’ 30 ’’ N, 101 o 43 ’ 24 ’’ E) were analysed using Neutron Activation Analysis (NAA) and Proton Induced X-ray Emission (PIXE). Results of the study show that the major component of the fine aerosol was black carbon and sulfur with the mass concentration ranged from 4.4 - 6.7µg m -3 and 1.2 - 1.9µg m -3 , respectively. The total fine aerosol mass concentration were in the ranged of 25 - 31µg m -3 with the reconstructed mass was about 50% as relative to the gravimetric mass. Statistical method, factor analysis with varimax approach has been applied to the aerosol composition data for the fingerprint identification. The analysis produces five identified fingerprint represent soil, industry, motor vehicles/biomass burning and Pb and Zn sources. There is also an unidentified source that could be related to unknown industrial activities.
A study to determine the influence of soil water status on the physiology of rice plant Oryza sativa var. MR220 after panicle initiation stage was carried out at Ladang Merdeka Mulong Lating in the Kemubu Agricultural Development Authority (KADA) area, Kelantan. Five water management treatments imposed on direct seeded rice were; T1. Continuous flooding, T2. Early flooding up to panicle initiation stage followed by saturated (F55-saturated), T3. Early flooding for the first month followed by saturated (F-30 saturated), T4. Continuous saturated, and T5. Continuous field capacity condition throughout the growth stage. The treatments were arranged in Randomized Complete Block Design (RCBD) with four replicates. In-situ stomatal conductance measurement was carried out at 68 DAS (days after seeding) and the elemental analysis of soil and plant samples was carried out using the Instrumental Neutron Activation Analysis (INAA). Results from this study showed significant differences between treatments for soil moisture content and plant moisture content, but no significance different in leaf stomatal conductance. Rice plant moisture, soil moisture and leaf stomatal conductance showed no interaction. Early flooding up to panicle initiation stage followed by saturated (T2: F55-saturated) resulted in higher plant moisture content. Soil plant transfer coefficient was highest in continuous saturated (T4) for nitrogen, early flooding for the first month followed by saturated (T3: F-30 saturated) for potassium, continuous field capacity condition throughout the growth stage (T5) for magnesium, and continuous flooding (T1) for sodium.
137 Cs is well known man-made radionuclide produced from nuclear industry. Nuclear weapon tests and nuclear accidents had contributed to presence of 137 Cs into the worldwide environment including Malaysia. It has spread out to the entire world through the air and water current. Since Cameron Highlands is located at high altitude, there is a better chance of the 137 Cs to settle down on the trees and later the soil underneath. In this study, the soil samples were taken at the slopes of two different tea plantation areas namely A and B. The soil samples were oven dried, ground, sieved and packed and sealed properly in plastic containers before measurement. Each plastic container contains around 450 g of sample. The measurement of 137 Cs activity concentration was done using HPGe detector gamma spectrometer. The spectrum was analyzed using Gamma Vision software to calculate the activity concentration of 137 Cs with energy peak of 661.66 keV. The activity concentration of 137 Cs found in the samples ranged from 0.23 to 1.90 and 0.11 to 3.01 Bq/kg for tea plantation A and tea plantation B, respectively. From the activity concentration of 137 Cs result, it was comparable to the others research regarding to 137 Cs in the soil around Asian.
Fly ash is the finely divided mineral residue resulting from the combustion of coal in electric generating plants. Fly ash consists of inorganic, incombustible matter present in the coal that has been fused during combustion into a glassy, amorphous structure. Fly ash particles are generally spherical in shape and range in size from 2 μm to 10 μm. They consist mostly of silicon dioxide (SiO2), aluminium oxide (Al2O3) and iron oxide (Fe2O3). Fly ash like soil contains trace concentrations of the following heavy metals: nickel, vanadium, cadmium, barium, chromium, copper, molybdenum, zinc and lead. The chemical compositions of the sample have been examined and the fly ash are of ASTM C618 Class F.
Land development, especially construction works, increase storm water volumes and pollution loads into rivers and lakes. The temporary drainage system at construction sites, particularly during the construction stage discharges a large amount of pollutants that can damage the aquatic system of the receiving water bodies. The potential of vegetative swale to alleviate this problem was evaluated. The size of the constructed vegetative swale was 7cm deep, 400cm long and 15cm wide at the bottom, and 17cm wide at the top. The experiment was conducted batch wise by filling the storage tank with the run-off water from the construction site. The water was allowed to flow through a pipe into the retention basin to maintain uniform flow before it entered the swale. The study showed that the run-off infiltrated through the soil at a rate of 489.6 mm/hr. Samples of surface run-off and infiltration water were collected at the end and the bottom of the swale. The results indicate that chemical oxygen demand (COD), total suspended solid (TSS), turbidity, iron and zinc were reduced by 85.4%, 80.8%, 36.4%, 52.8% and 96.0%, respectively, by surface flow and 91.1%, 98.8%, 58.2% 55.5% and 98.1%, respectively, by infiltration. Removal of nitrate and phosphorus by the planted vegetation was 69.4% and 21.1%, respectively, by infiltration. However, nutrient removal by surface flow was negligible. In conclusion, the vegetative swale was able to improve the water quality of the storm water run-off from the construction site from Class V to Class III, according to the Interim National Water Quality Standards for Malaysia.
The present work sought to investigate the nutritional composition and phytochemical properties of red pitaya (Hylocereus polyrhizus) juices from Malaysia and Australia and to determine the optimum ethanol concentration (in the range of 0 – 100% ethanol) for the extraction of phenolic, flavonoid and betacyanin contents. The predominant macronutrient in red pitaya juice was carbohydrate while potassium and vitamin A were the major mineral and vitamin content. Red pitaya juice from Malaysia achieved optimal total phenolic content at 20% of ethanol (20 mL ethanol in 100 mL water, v/v); total flavonoid content at 60% (v/v); and betacyanin content at 0% (v/v). Red pitaya juice from Australia achieved the maximum total phenolic content at 60% (v/v); total flavonoid content at 20% (v/v); and betacyanin content at 80% (v/v). Nutritional composition and the phytochemical properties of red pitaya in Malaysia and Australia were significantly different suggested the role of environmental factors like soil and climate on the phytochemical properties of red pitaya.
Pathogenic leptospiras (1,424) isolated from natural waters and wet soils in Malaysia comprised 29 different serovars (synonym serotypes). All except two of the serovars had been found previously in Malaysia. The exceptional serovars were werrasingha, an Autumnalis serogroup member originally isolated in Ceylon, and a new serovar designated evansi. Serovar evansi had serological affinities with serovar ranarum which was isolated from the kidney of a frog in Iowa. The large variety of serovars found in jungle areas was consistent with similar previous findings of diverse serovar infections in troops who had operated in Malaysian jungles.
One of the factors on which the incidence of leptospirosis is dependent is the survival time of shed leptospires in surface water or soil water, and this time is in turn affected by the acidity or alkalinity of the water. The authors have therefore studied the survival of four leptospiral serotypes in buffered distilled water at pH's ranging from 5.3 to 8.0. All survived longer in alkaline than in acid water, and significant differences between the serotypes were found in response to pH. Survival at pH's under 7.0 ranged from 10 to 117 days and at pH's over 7.0 from 21 to 152 days. Survival was also studied in aqueous extracts of soil samples from different areas in Malaya; no correlation was found between pH and survival time.It was also noted that in a group of Malayan ricefields a low incidence of leptospirosis in man was accompanied by a high infection rate among rodents, and when it was found that this phenomenon could not be explained by pH or salinity, attention was turned to the soil. Bentonite clay, similar to the montmorrillonite clay of the ricefields, was found to adsorb about half the leptospires in suspension. The authors recommend that field study of this laboratory observation be undertaken.
The Orang Aslis are indigenous minority peoples of Peninsular Malaysia, numbering 147,412 in 2003.Currently, the Orang Asli are divided into four language groupings namely the Northern Aslian, the Central Aslian, and the Southern Aslian groups, all of whom speak Austroasiatic languages; a fourth group in the South of Peninsular Malaysia speak a Malay dialect belonging to the Austronesian group of languages.This research was carried out on only one of the Northern Aslian group, the Jehai, who are also named Negritos based on their physical features. The Jehai live in the Belum and the Temenggor Forest that straddles Upper Perak and West Kelantan and until recently, were nomadic and lived by hunting-gathering.The World Health Organization (WHO) estimates that approximately two billion people worldwide are infected with the soil-transmitted nematode helminths,Ascaris lumbricoides, Trichuris trichiura and the hookworms Necator americanus and Ancylostoma duodenale, with 400 million of these infected being children of school age.Global numbers of A. lumbricoides infection have been estimated at about 1.5 billion cases. (Crompton, 2001). T. trichiura infection affects approximately 1,049 million people worldwide and an estimated 1.2 billion people are infected by hookworms. In Malaysia, the most common soil-transmitted helminth infections are A. lumbricoides, T. trichiura and hookworms.
However, as there have been no extensive surveys on these infections, it is difficult to estimate with certainty the current overall incidence of infection with soil-transmitted helminths (STHs) among the Malaysian population.
Trace metals are required in many cellular processes in bacteria but also induce toxic effects to cells when present in excess. As such, various forms of adaptive responses towards extracellular trace metal ions are essential for the survival and fitness of bacteria in their environment. A soil Pseudomonas putida, strain S13.1.2 has been isolated from French vineyard soil samples, and shown to confer resistance to copper ions. Further investigation revealed a high capacity to tolerate elevated concentrations of various heavy metals including nickel, cobalt, cadmium, zinc and arsenic. The complete genome analysis was conducted using single-molecule real-time (SMRT) sequencing and the genome consisted in a single chromosome at the size of 6.6 Mb. Presence of operons and gene clusters such as cop, cus, czc, nik, and asc systems were detected and accounted for the observed resistance phenotypes. The unique features in terms of specificity and arrangements of some genetic determinants were also highlighted in the study. Our findings has provided insights into the adaptation of this strain to accumulation and persistence of copper and other heavy metals in vineyard soil environment.