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Fulltext Comparison of classification algorithms for predicting autistic spectrum disorder using WEKA modeler

Mohd Radzi SF, Hassan MS, Mohd Radzi MAH

BMC Med Inform Decis Mak, 2022 Nov 24;22(1):306.
PMID: 36434656 DOI: 10.1186/s12911-022-02050-x

BACKGROUND: In healthcare area, big data, if integrated with machine learning, enables health practitioners to predict the result of a disorder or disease more accurately. In Autistic Spectrum Disorder (ASD), it is important to screen the patients to enable them to undergo proper treatments as early as possible. However, difficulties may arise in predicting ASD occurrences accurately, mainly caused by human errors. Data mining, if embedded into health screening practice, can help to overcome the difficulties. This study attempts to evaluate the performance of six best classifiers, taken from existing works, at analysing ASD screening training dataset.
RESULT: We tested Naive Bayes, Logistic Regression, KNN, J48, Random Forest, SVM, and Deep Neural Network algorithms to ASD screening dataset and compared the classifiers' based on significant parameters; sensitivity, specificity, accuracy, receiver operating characteristic, area under the curve, and runtime, in predicting ASD occurrences. We also found that most of previous studies focused on classifying health-related dataset while ignoring the missing values which may contribute to significant impacts to the classification result which in turn may impact the life of the patients. Thus, we addressed the missing values by implementing imputation method where they are replaced with the mean of the available records found in the dataset.
CONCLUSION: We found that J48 produced promising results as compared to other classifiers when tested in both circumstances, with and without missing values. Our findings also suggested that SVM does not necessarily perform well for small and simple datasets. The outcome is hoped to assist health practitioners in making accurate diagnosis of ASD occurrences in patients.

Matched MeSH terms: Machine Learning
Fulltext Detection of Colorectal Polyps from Colonoscopy Using Machine Learning: A Survey on Modern Techniques

ELKarazle K, Raman V, Then P, Chua C

Sensors (Basel), 2023 Jan 20;23(3).
PMID: 36772263 DOI: 10.3390/s23031225

Given the increased interest in utilizing artificial intelligence as an assistive tool in the medical sector, colorectal polyp detection and classification using deep learning techniques has been an active area of research in recent years. The motivation for researching this topic is that physicians miss polyps from time to time due to fatigue and lack of experience carrying out the procedure. Unidentified polyps can cause further complications and ultimately lead to colorectal cancer (CRC), one of the leading causes of cancer mortality. Although various techniques have been presented recently, several key issues, such as the lack of enough training data, white light reflection, and blur affect the performance of such methods. This paper presents a survey on recently proposed methods for detecting polyps from colonoscopy. The survey covers benchmark dataset analysis, evaluation metrics, common challenges, standard methods of building polyp detectors and a review of the latest work in the literature. We conclude this paper by providing a precise analysis of the gaps and trends discovered in the reviewed literature for future work.

Matched MeSH terms: Machine Learning
Fulltext Occupational Injury Risk Mitigation: Machine Learning Approach and Feature Optimization for Smart Workplace Surveillance

Khairuddin MZF, Lu Hui P, Hasikin K, Abd Razak NA, Lai KW, Mohd Saudi AS, et al.

Int J Environ Res Public Health, 2022 Oct 27;19(21).
PMID: 36360843 DOI: 10.3390/ijerph192113962

Forecasting the severity of occupational injuries shall be all industries' top priority. The use of machine learning is theoretically valuable to assist the predictive analysis, thus, this study attempts to propose a feature-optimized predictive model for anticipating occupational injury severity. A public database of 66,405 occupational injury records from OSHA is analyzed using five sets of machine learning models: Support Vector Machine, K-Nearest Neighbors, Naïve Bayes, Decision Tree, and Random Forest. For model comparison, Random Forest outperformed other models with higher accuracy and F1-score. Therefore, it highlighted the potential of ensemble learning as a more accurate prediction model in the field of occupational injury. In constructing the model, this study also proposed the feature optimization technique that revealed the three most important features; 'nature of injury', 'type of event', and 'affected body part' in developing model. The accuracy of the Random Forest model was improved by 0.5% or 0.895 and 0.954 for the prediction of hospitalization and amputation, respectively by redeveloping and optimizing the model with hyperparameter tuning. The feature optimization is essential in providing insight knowledge to the Safety and Health Practitioners for future injury corrective and preventive strategies. This study has shown promising potential for smart workplace surveillance.

Matched MeSH terms: Machine Learning
Tree-based machine learning model for visualizing complex relationships between biochar properties and anaerobic digestion

Zhang Y, Feng Y, Ren Z, Zuo R, Zhang T, Li Y, et al.

Bioresour Technol, 2023 Apr;374:128746.
PMID: 36813050 DOI: 10.1016/j.biortech.2023.128746

The ideal conditions for anaerobic digestion experiments with biochar addition are challenging to thoroughly study due to different experimental purposes. Therefore, three tree-based machine learning models were developed to depict the intricate connection between biochar properties and anaerobic digestion. For the methane yield and maximum methane production rate, the gradient boosting decision tree produced R2 values of 0.84 and 0.69, respectively. According to feature analysis, digestion time and particle size had a substantial impact on the methane yield and production rate, respectively. When particle sizes were in the range of 0.3-0.5 mm and the specific surface area was approximately 290 m2/g, corresponding to a range of O content (>31%) and biochar addition (>20 g/L), the maximum promotion of methane yield and maximum methane production rate were attained. Therefore, this study presents new insights into the effects of biochar on anaerobic digestion through tree-based machine learning.

Matched MeSH terms: Machine Learning
Regression models for sediment transport in tropical rivers

Harun MA, Safari MJS, Gul E, Ab Ghani A

Environ Sci Pollut Res Int, 2021 Oct;28(38):53097-53115.
PMID: 34023993 DOI: 10.1007/s11356-021-14479-0

The investigation of sediment transport in tropical rivers is essential for planning effective integrated river basin management to predict the changes in rivers. The characteristics of rivers and sediment in the tropical region are different compared to those of the rivers in Europe and the USA, where the median sediment size tends to be much more refined. The origins of the rivers are mainly tropical forests. Due to the complexity of determining sediment transport, many sediment transport equations were recommended in the literature. However, the accuracy of the prediction results remains low, particularly for the tropical rivers. The majority of the existing equations were developed using multiple non-linear regression (MNLR). Machine learning has recently been the method of choice to increase model prediction accuracy in complex hydrological problems. Compared to the conventional MNLR method, machine learning algorithms have advanced and can produce a useful prediction model. In this research, three machine learning models, namely evolutionary polynomial regression (EPR), multi-gene genetic programming (MGGP) and M5 tree model (M5P), were implemented to model sediment transport for rivers in Malaysia. The formulated variables for the prediction model were originated from the revised equations reported in the relevant literature for Malaysian rivers. Among the three machine learning models, in terms of different statistical measurement criteria, EPR gives the best prediction model, followed by MGGP and M5P. Machine learning is excellent at improving the prediction distribution of high data values but lacks accuracy compared to observations of lower data values. These results indicate that further study needs to be done to improve the machine learning model's accuracy to predict sediment transport.

Matched MeSH terms: Machine Learning
Fulltext Diagnosis of Schizophrenia Based on the Data of Various Modalities: Biomarkers and Machine Learning Techniques (Review)

Sharaev MG, Malashenkova IK, Maslennikova AV, Zakharova NV, Bernstein AV, Burnaev EV, et al.

Sovrem Tekhnologii Med, 2022;14(5):53-75.
PMID: 37181835 DOI: 10.17691/stm2022.14.5.06

Schizophrenia is a socially significant mental disorder resulting frequently in severe forms of disability. Diagnosis, choice of treatment tactics, and rehabilitation in clinical psychiatry are mainly based on the assessment of behavioral patterns, socio-demographic data, and other investigations such as clinical observations and neuropsychological testing including examination of patients by the psychiatrist, self-reports, and questionnaires. In many respects, these data are subjective and therefore a large number of works have appeared in recent years devoted to the search for objective characteristics (indices, biomarkers) of the processes going on in the human body and reflected in the behavioral and psychoneurological patterns of patients. Such biomarkers are based on the results of instrumental and laboratory studies (neuroimaging, electro-physiological, biochemical, immunological, genetic, and others) and are successfully being used in neurosciences for understanding the mechanisms of the emergence and development of nervous system pathologies. Presently, with the advent of new effective neuroimaging, laboratory, and other methods of investigation and also with the development of modern methods of data analysis, machine learning, and artificial intelligence, a great number of scientific and clinical studies is being conducted devoted to the search for the markers which have diagnostic and prognostic value and may be used in clinical practice to objectivize the processes of establishing and clarifying the diagnosis, choosing and optimizing treatment and rehabilitation tactics, predicting the course and outcome of the disease. This review presents the analysis of the works which describe the correlates between the diagnosis of schizophrenia, established by health professionals, various manifestations of the psychiatric disorder (its subtype, variant of the course, severity degree, observed symptoms, etc.), and objectively measured characteristics/quantitative indicators (anatomical, functional, immunological, genetic, and others) obtained during instrumental and laboratory examinations of patients. A considerable part of these works has been devoted to correlates/biomarkers of schizophrenia based on the data of structural and functional (at rest and under cognitive load) MRI, EEG, tractography, and immunological data. The found correlates/biomarkers reflect anatomic disorders in the specific brain regions, impairment of functional activity of brain regions and their interconnections, specific microstructure of the brain white matter and the levels of connectivity between the tracts of various structures, alterations of electrical activity in various parts of the brain in different EEG spectral ranges, as well as changes in the innate and adaptive links of immunity. Current methods of data analysis and machine learning to search for schizophrenia biomarkers using the data of diverse modalities and their application during building and interpretation of predictive diagnostic models of schizophrenia have been considered in the present review.

Matched MeSH terms: Machine Learning
Automated Brain Tumor Detection Using Machine Learning: A Bibliometric Review

Hossain R, Ibrahim RB, Hashim HB

World Neurosurg, 2023 Jul;175:57-68.
PMID: 37019303 DOI: 10.1016/j.wneu.2023.03.115

To develop a research overview of brain tumor classification using machine learning, we conducted a systematic review with a bibliometric analysis. Our systematic review and bibliometric analysis included 1747 studies of automated brain tumor detection using machine learning reported in the previous 5 years (2019-2023) from 679 different sources and authored by 6632 investigators. Bibliographic data were collected from the Scopus database, and a comprehensive bibliometric analysis was conducted using Biblioshiny and the R platform. The most productive and collaborative institutes, reports, journals, and countries were determined using citation analysis. In addition, various collaboration metrics were determined at the institute, country, and author level. Lotka's law was tested using the authors' performance. Analysis showed that the authors' publication trends followed Lotka's inverse square law. An annual publication analysis showed that 36.46% of the studies had been reported in 2022, with steady growth from previous years. Most of the cited authors had focused on multiclass classification and novel convolutional neural network models that are efficient for small training sets. A keyword analysis showed that "deep learning," "magnetic resonance imaging," "nuclear magnetic resonance imaging," and "glioma" appeared most often, proving that of the several brain tumor types, most studies had focused on glioma. India, China, and the United States were among the highest collaborative countries in terms of both authors and institutes. The University of Toronto and Harvard Medical School had the highest number of affiliations with 132 and 87 publications, respectively.

Matched MeSH terms: Machine Learning
Fulltext Electrospun nanofiber membrane diameter prediction using a combined response surface methodology and machine learning approach

Pervez MN, Yeo WS, Mishu MMR, Talukder ME, Roy H, Islam MS, et al.

Sci Rep, 2023 Jun 15;13(1):9679.
PMID: 37322139 DOI: 10.1038/s41598-023-36431-7

Despite the widespread interest in electrospinning technology, very few simulation studies have been conducted. Thus, the current research produced a system for providing a sustainable and effective electrospinning process by combining the design of experiments with machine learning prediction models. Specifically, in order to estimate the diameter of the electrospun nanofiber membrane, we developed a locally weighted kernel partial least squares regression (LW-KPLSR) model based on a response surface methodology (RSM). The accuracy of the model's predictions was evaluated based on its root mean square error (RMSE), its mean absolute error (MAE), and its coefficient of determination (R2). In addition to principal component regression (PCR), locally weighted partial least squares regression (LW-PLSR), partial least square regression (PLSR), and least square support vector regression model (LSSVR), some of the other types of regression models used to verify and compare the results were fuzzy modelling and least square support vector regression model (LSSVR). According to the results of our research, the LW-KPLSR model performed far better than other competing models when attempting to forecast the membrane's diameter. This is made clear by the much lower RMSE and MAE values of the LW-KPLSR model. In addition, it offered the highest R2 values that could be achieved, reaching 0.9989.

Matched MeSH terms: Machine Learning
Fulltext A Deep Learning Approach for Dengue Fever Prediction in Malaysia Using LSTM with Spatial Attention

Majeed MA, Shafri HZM, Zulkafli Z, Wayayok A

Int J Environ Res Public Health, 2023 Feb 25;20(5).
PMID: 36901139 DOI: 10.3390/ijerph20054130

This research aims to predict dengue fever cases in Malaysia using machine learning techniques. A dataset consisting of weekly dengue cases at the state level in Malaysia from 2010 to 2016 was obtained from the Malaysia Open Data website and includes variables such as climate, geography, and demographics. Six different long short-term memory (LSTM) models were developed and compared for dengue prediction in Malaysia: LSTM, stacked LSTM (S-LSTM), LSTM with temporal attention (TA-LSTM), S-LSTM with temporal attention (STA-LSTM), LSTM with spatial attention (SA-LSTM), and S-LSTM with spatial attention (SSA-LSTM). The models were trained and evaluated on a dataset of monthly dengue cases in Malaysia from 2010 to 2016, with the task of predicting the number of dengue cases based on various climate, topographic, demographic, and land-use variables. The SSA-LSTM model, which used both stacked LSTM layers and spatial attention, performed the best, with an average root mean squared error (RMSE) of 3.17 across all lookback periods. When compared to three benchmark models (SVM, DT, ANN), the SSA-LSTM model had a significantly lower average RMSE. The SSA-LSTM model also performed well in different states in Malaysia, with RMSE values ranging from 2.91 to 4.55. When comparing temporal and spatial attention models, the spatial models generally performed better at predicting dengue cases. The SSA-LSTM model was also found to perform well at different prediction horizons, with the lowest RMSE at 4- and 5-month lookback periods. Overall, the results suggest that the SSA-LSTM model is effective at predicting dengue cases in Malaysia.

Matched MeSH terms: Machine Learning
Driving style recognition using machine learning and smartphones

Bin Jamal Mohd Lokman EH, Goh VT, Yap TTV, Ng H

F1000Res, 2022;11:57.
PMID: 37082303 DOI: 10.12688/f1000research.73134.1

Background: The lack of real-time monitoring is one of the reasons for the lack of awareness among drivers of their dangerous driving behavior. This work aims to develop a driver profiling system where a smartphone's built-in sensors are used alongside machine learning algorithms to classify different driving behaviors. Methods: We attempt to determine the optimal combination of smartphone sensors such as accelerometer, gyroscope, and GPS in order to develop an accurate machine learning algorithm capable of identifying different driving events (e.g. turning, accelerating, or braking). Results: In our preliminary studies, we encountered some difficulties in obtaining consistent driving events, which had the potential to add "noise" to the observations, thus reducing the accuracy of the classification. However, after some pre-processing, which included manual elimination of extraneous and erroneous events, and with the use of the Convolutional Neural Networks (CNN), we have been able to distinguish different driving events with an accuracy of about 95%. Conclusions: Based on the results of preliminary studies, we have determined that proposed approach is effective in classifying different driving events, which in turn will allow us to determine driver's driving behavior.

Matched MeSH terms: Machine Learning
Fulltext Blockchain and Machine Learning Inspired Secure Smart Home Communication Network

Menon S, Anand D, Kavita, Verma S, Kaur M, Jhanjhi NZ, et al.

Sensors (Basel), 2023 Jul 04;23(13).
PMID: 37447981 DOI: 10.3390/s23136132

With the increasing growth rate of smart home devices and their interconnectivity via the Internet of Things (IoT), security threats to the communication network have become a concern. This paper proposes a learning engine for a smart home communication network that utilizes blockchain-based secure communication and a cloud-based data evaluation layer to segregate and rank data on the basis of three broad categories of Transactions (T), namely Smart T, Mod T, and Avoid T. The learning engine utilizes a neural network for the training and classification of the categories that helps the blockchain layer with improvisation in the decision-making process. The contributions of this paper include the application of a secure blockchain layer for user authentication and the generation of a ledger for the communication network; the utilization of the cloud-based data evaluation layer; the enhancement of an SI-based algorithm for training; and the utilization of a neural engine for the precise training and classification of categories. The proposed algorithm outperformed the Fused Real-Time Sequential Deep Extreme Learning Machine (RTS-DELM) system, the data fusion technique, and artificial intelligence Internet of Things technology in providing electronic information engineering and analyzing optimization schemes in terms of the computation complexity, false authentication rate, and qualitative parameters with a lower average computation complexity; in addition, it ensures a secure, efficient smart home communication network to enhance the lifestyle of human beings.

Matched MeSH terms: Machine Learning
Fulltext Barnacles Mating Optimizer with Deep Transfer Learning Enabled Biomedical Malaria Parasite Detection and Classification

Dutta AK, Mageswari RU, Gayathri A, Dallfin Bruxella JM, Ishak MK, Mostafa SM, et al.

Comput Intell Neurosci, 2022;2022:7776319.
PMID: 35694571 DOI: 10.1155/2022/7776319

Biomedical engineering involves ideologies and problem-solving methods of engineering to biology and medicine. Malaria is a life-threatening illness, which has gained significant attention among researchers. Since the manual diagnosis of malaria in a clinical setting is tedious, automated tools based on computational intelligence (CI) tools have gained considerable interest. Though earlier studies were focused on the handcrafted features, the diagnostic accuracy can be boosted through deep learning (DL) methods. This study introduces a new Barnacles Mating Optimizer with Deep Transfer Learning Enabled Biomedical Malaria Parasite Detection and Classification (BMODTL-BMPC) model. The presented BMODTL-BMPC model involves the design of intelligent models for the recognition and classification of malaria parasites. Initially, the Gaussian filtering (GF) approach is employed to eradicate noise in blood smear images. Then, Graph cuts (GC) segmentation technique is applied to determine the affected regions in the blood smear images. Moreover, the barnacles mating optimizer (BMO) algorithm with the NasNetLarge model is employed for the feature extraction process. Furthermore, the extreme learning machine (ELM) classification model is employed for the identification and classification of malaria parasites. To assure the enhanced outcomes of the BMODTL-BMPC technique, a wide-ranging experimentation analysis is performed using a benchmark dataset. The experimental results show that the BMODTL-BMPC technique outperforms other recent approaches.

Matched MeSH terms: Machine Learning
Using artificial intelligence methods for systematic review in health sciences: A systematic review

Blaizot A, Veettil SK, Saidoung P, Moreno-Garcia CF, Wiratunga N, Aceves-Martins M, et al.

Res Synth Methods, 2022 May;13(3):353-362.
PMID: 35174972 DOI: 10.1002/jrsm.1553

The exponential increase in published articles makes a thorough and expedient review of literature increasingly challenging. This review delineated automated tools and platforms that employ artificial intelligence (AI) approaches and evaluated the reported benefits and challenges in using such methods. A search was conducted in 4 databases (Medline, Embase, CDSR, and Epistemonikos) up to April 2021 for systematic reviews and other related reviews implementing AI methods. To be included, the review must use any form of AI method, including machine learning, deep learning, neural network, or any other applications used to enable the full or semi-autonomous performance of one or more stages in the development of evidence synthesis. Twelve reviews were included, using nine different tools to implement 15 different AI methods. Eleven methods were used in the screening stages of the review (73%). The rest were divided: two in data extraction (13%) and two in risk of bias assessment (13%). The ambiguous benefits of the data extractions, combined with the reported advantages from 10 reviews, indicating that AI platforms have taken hold with varying success in evidence synthesis. However, the results are qualified by the reliance on the self-reporting of the review authors. Extensive human validation still appears required at this stage in implementing AI methods, though further evaluation is required to define the overall contribution of such platforms in enhancing efficiency and quality in evidence synthesis.

Matched MeSH terms: Machine Learning
Fulltext A biomarker discovery of acute myocardial infarction using feature selection and machine learning

Mohd Faizal AS, Hon WY, Thevarajah TM, Khor SM, Chang SW

Med Biol Eng Comput, 2023 Oct;61(10):2527-2541.
PMID: 37199891 DOI: 10.1007/s11517-023-02841-y

Acute myocardial infarction (AMI) or heart attack is a significant global health threat and one of the leading causes of death. The evolution of machine learning has greatly revamped the risk stratification and death prediction of AMI. In this study, an integrated feature selection and machine learning approach was used to identify potential biomarkers for early detection and treatment of AMI. First, feature selection was conducted and evaluated before all classification tasks with machine learning. Full classification models (using all 62 features) and reduced classification models (using various feature selection methods ranging from 5 to 30 features) were built and evaluated using six machine learning classification algorithms. The results showed that the reduced models performed generally better (mean AUPRC via random forest (RF) algorithm for recursive feature elimination (RFE) method ranges from 0.8048 to 0.8260, while for random forest importance (RFI) method, it ranges from 0.8301 to 0.8505) than the full models (mean AUPRC via RF: 0.8044). The most notable finding of this study was the identification of a five-feature model that included cardiac troponin I, HDL cholesterol, HbA1c, anion gap, and albumin, which had achieved comparable results (mean AUPRC via RF: 0.8462) as to the models that containing more features. These five features were proven by the previous studies as significant risk factors for AMI or cardiovascular disease and could be used as potential biomarkers to predict the prognosis of AMI patients. From the medical point of view, fewer features for diagnosis or prognosis could reduce the cost and time of a patient as lesser clinical and pathological tests are needed.

Matched MeSH terms: Machine Learning
Fulltext Machine Learning-Based Performance Comparison to Diagnose Anterior Cruciate Ligament Tears

Awan MJ, Mohd Rahim MS, Salim N, Rehman A, Nobanee H

J Healthc Eng, 2022;2022:2550120.
PMID: 35444781 DOI: 10.1155/2022/2550120

In recent times, knee joint pains have become severe enough to make daily tasks difficult. Knee osteoarthritis is a type of arthritis and a leading cause of disability worldwide. The middle of the knee contains a vital portion, the anterior cruciate ligament (ACL). It is necessary to diagnose the ACL ruptured tears early to avoid surgery. The study aimed to perform a comparative analysis of machine learning models to identify the condition of three ACL tears. In contrast to previous studies, this study also considers imbalanced data distributions as machine learning techniques struggle to deal with this problem. The paper applied and analyzed four machine learning classification models, namely, random forest (RF), categorical boosting (Cat Boost), light gradient boosting machines (LGBM), and highly randomized classifier (ETC) on the balanced, structured dataset of ACL. After oversampling a hyperparameter adjustment, the above four models have achieved an average accuracy of 95.72%, 94.98%, 94.98%, and 98.26%. There are 2070 observations and eight features in the collection of three diagnosis ACL classes after oversampling. The area under curve value was approximately 0.998, respectively. Experiments were performed using twelve machine learning algorithms with imbalanced and balanced datasets. However, the accuracy of the imbalanced dataset has remained under 76% for all twelve models. After oversampling, the proposed model may contribute to the investigation of ACL tears on magnetic resonance imaging and other knee ligaments efficiently and automatically without involving radiologists.

Matched MeSH terms: Machine Learning
Fulltext Discovering Knee Osteoarthritis Imaging Features for Diagnosis and Prognosis: Review of Manual Imaging Grading and Machine Learning Approaches

Teoh YX, Lai KW, Usman J, Goh SL, Mohafez H, Hasikin K, et al.

J Healthc Eng, 2022;2022:4138666.
PMID: 35222885 DOI: 10.1155/2022/4138666

Knee osteoarthritis (OA) is a deliberating joint disorder characterized by cartilage loss that can be captured by imaging modalities and translated into imaging features. Observing imaging features is a well-known objective assessment for knee OA disorder. However, the variety of imaging features is rarely discussed. This study reviews knee OA imaging features with respect to different imaging modalities for traditional OA diagnosis and updates recent image-based machine learning approaches for knee OA diagnosis and prognosis. Although most studies recognized X-ray as standard imaging option for knee OA diagnosis, the imaging features are limited to bony changes and less sensitive to short-term OA changes. Researchers have recommended the usage of MRI to study the hidden OA-related radiomic features in soft tissues and bony structures. Furthermore, ultrasound imaging features should be explored to make it more feasible for point-of-care diagnosis. Traditional knee OA diagnosis mainly relies on manual interpretation of medical images based on the Kellgren-Lawrence (KL) grading scheme, but this approach is consistently prone to human resource and time constraints and less effective for OA prevention. Recent studies revealed the capability of machine learning approaches in automating knee OA diagnosis and prognosis, through three major tasks: knee joint localization (detection and segmentation), classification of OA severity, and prediction of disease progression. AI-aided diagnostic models improved the quality of knee OA diagnosis significantly in terms of time taken, reproducibility, and accuracy. Prognostic ability was demonstrated by several prediction models in terms of estimating possible OA onset, OA deterioration, progressive pain, progressive structural change, progressive structural change with pain, and time to total knee replacement (TKR) incidence. Despite research gaps, machine learning techniques still manifest huge potential to work on demanding tasks such as early knee OA detection and estimation of future disease events, as well as fundamental tasks such as discovering the new imaging features and establishment of novel OA status measure. Continuous machine learning model enhancement may favour the discovery of new OA treatment in future.

Matched MeSH terms: Machine Learning
Fulltext Common institutional investors and the quality of management earnings forecasts-Empirical and machine learning evidences

Yang S, Li X, Jiang Z, Xiao M

PLoS One, 2023;18(10):e0290126.
PMID: 37844110 DOI: 10.1371/journal.pone.0290126

Based on the data of the Chinese A-share listed firms in China Shanghai and Shenzhen Stock Exchange from 2014 to 2021, this article explores the relationship between common institutional investors and the quality of management earnings forecasts. The study used the multiple linear regression model and empirically found that common institutional investors positively impact the precision of earnings forecasts. This article also uses graph neural networks to predict the precision of earnings forecasts. Our findings have shown that common institutional investors form external supervision over restricting management to release a wide width of earnings forecasts, which helps to improve the risk warning function of earnings forecasts and promote the sustainable development of information disclosure from management in the Chinese capital market. One of the marginal contributions of this paper is that it enriches the literature related to the economic consequences of common institutional shareholding. Then, the neural network method used to predict the quality of management forecasts enhances the research method of institutional investors and the behavior of management earnings forecasts. Thirdly, this paper calls for strengthening information sharing and circulation among institutional investors to reduce information asymmetry between investors and management.

Matched MeSH terms: Machine Learning
A method to improve the prediction performance of cancer-gene association by screening negative training samples through gene network data

Xu M, Abdullah NA, Md Sabri AQ

Comput Biol Chem, 2024 Feb;108:107997.
PMID: 38154318 DOI: 10.1016/j.compbiolchem.2023.107997

This work focuses on data sampling in cancer-gene association prediction. Currently, researchers are using machine learning methods to predict genes that are more likely to produce cancer-causing mutations. To improve the performance of machine learning models, methods have been proposed, one of which is to improve the quality of the training data. Existing methods focus mainly on positive data, i.e. cancer driver genes, for screening selection. This paper proposes a low-cancer-related gene screening method based on gene network and graph theory algorithms to improve the negative samples selection. Genetic data with low cancer correlation is used as negative training samples. After experimental verification, using the negative samples screened by this method to train the cancer gene classification model can improve prediction performance. The biggest advantage of this method is that it can be easily combined with other methods that focus on enhancing the quality of positive training samples. It has been demonstrated that significant improvement is achieved by combining this method with three state-of-the-arts cancer gene prediction methods.

Matched MeSH terms: Machine Learning
An ensemble of bioinformatics and machine learning approaches to identify shared breast cancer biomarkers among diverse populations

Sultan G, Zubair S

Comput Biol Chem, 2024 Feb;108:107999.
PMID: 38070457 DOI: 10.1016/j.compbiolchem.2023.107999

Breast cancer continues to be a prominent cause for substantial loss of life among women globally. Despite established treatment approaches, the rising prevalence of breast cancer is a concerning trend regardless of geographical location. This highlights the need to identify common key genes and explore their biological significance across diverse populations. Our research centered on establishing a correlation between common key genes identified in breast cancer patients. While previous studies have reported many of the genes independently, our study delved into the unexplored realm of their mutual interactions, that may establish a foundational network contributing to breast cancer development. Machine learning algorithms were employed for sample classification and key gene selection. The best performance model further selected the candidate genes through expression pattern recognition. Subsequently, the genes common in all the breast cancer patients from India, China, Czech Republic, Germany, Malaysia and Saudi Arabia were selected for further study. We found that among ten classifiers, Catboost exhibited superior performance with an average accuracy of 92%. Functional enrichment analysis and pathway analysis revealed that calcium signaling pathway, regulation of actin cytoskeleton pathway and other cancer-associated pathways were highly enriched with our identified genes. Notably, we observed that these genes regulate each other, forming a complex network. Additionally, we identified PALMD gene as a novel potential biomarker for breast cancer progression. Our study revealed key gene modules forming a complex network that were consistently expressed in different populations, affirming their critical role and biological significance in breast cancer. The identified genes hold promise as prospective biomarkers of breast cancer prognosis irrespective of country of origin or ethnicity. Future investigations will expand upon these genes in a larger population and validate their biological functions through in vivo analysis.

Matched MeSH terms: Machine Learning
Revolutionizing crop disease detection with computational deep learning: a comprehensive review

Ngugi HN, Ezugwu AE, Akinyelu AA, Abualigah L

Environ Monit Assess, 2024 Feb 24;196(3):302.
PMID: 38401024 DOI: 10.1007/s10661-024-12454-z

Digital image processing has witnessed a significant transformation, owing to the adoption of deep learning (DL) algorithms, which have proven to be vastly superior to conventional methods for crop detection. These DL algorithms have recently found successful applications across various domains, translating input data, such as images of afflicted plants, into valuable insights, like the identification of specific crop diseases. This innovation has spurred the development of cutting-edge techniques for early detection and diagnosis of crop diseases, leveraging tools such as convolutional neural networks (CNN), K-nearest neighbour (KNN), support vector machines (SVM), and artificial neural networks (ANN). This paper offers an all-encompassing exploration of the contemporary literature on methods for diagnosing, categorizing, and gauging the severity of crop diseases. The review examines the performance analysis of the latest machine learning (ML) and DL techniques outlined in these studies. It also scrutinizes the methodologies and datasets and outlines the prevalent recommendations and identified gaps within different research investigations. As a conclusion, the review offers insights into potential solutions and outlines the direction for future research in this field. The review underscores that while most studies have concentrated on traditional ML algorithms and CNN, there has been a noticeable dearth of focus on emerging DL algorithms like capsule neural networks and vision transformers. Furthermore, it sheds light on the fact that several datasets employed for training and evaluating DL models have been tailored to suit specific crop types, emphasizing the pressing need for a comprehensive and expansive image dataset encompassing a wider array of crop varieties. Moreover, the survey draws attention to the prevailing trend where the majority of research endeavours have concentrated on individual plant diseases, ML, or DL algorithms. In light of this, it advocates for the development of a unified framework that harnesses an ensemble of ML and DL algorithms to address the complexities of multiple plant diseases effectively.

Matched MeSH terms: Machine Learning

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