Displaying publications 1 - 20 of 93 in total

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  1. Rukayadi, Y., Lau, K.Y., Zainin, N.S., Zakaria, M., Abas, F.
    MyJurnal
    Edible medicinal plants are often used in the treatment of various ailments and spice in traditional food preparation. In this study, 45 of tropical edible medicinal plants extracts from Indonesia, Malaysia, and Thailand were screened for their antimicrobial activity against five standard microorganisms for food preservative namely Aspergillus niger, Candida albicans, Escherichia coli, Pseudomonas aeruginosa and Staphylococcus aureus. The methanol extracts of Piper nigrum L. seed, Piper cubeba L. seed, and the root of Ligusticum acutilobum Siebold and Zucc. showed antimicrobial activity against five species of standard microorganisms. Among them, P. cubeba L. extract demonstrated the most susceptible against all tested microorganisms. Minimal inhibitory concentration (MIC) and minimal bactericidal or fungicidal concentration (MBC or MFC) were performed by the broth microdilution techniques as described by the Clinical and Laboratory Standard Institute. MIC values of P. cubeba L. extract to A. niger, C. albicans, E. coli, P. aeruginosa and S. aureus were 12.8, 1.6, 3.2, 6.4, and 1.6 mg/ml, respectively. P. cubeba extract killed A. niger, C. albicans, E. coli, P. aeruginosa and S. aureus with MBC values of 25.6, 3.2, 6.4, 12.8, and 3.2 mg/ml, respectively. The potent antimicrobial activity of P. cubeba L. extract may support its use for natural food preservative.
  2. Eslaminejad T, Zakaria M
    Microb Pathog, 2011 Nov;51(5):325-37.
    PMID: 21839160 DOI: 10.1016/j.micpath.2011.07.007
    Roselle, or Jamaica sorrel (Hibiscus sabdariffa) is a popular vegetable in many tropical regions, cultivated for its leaves, seeds, stems and calyces which, the dried calyces are used to prepare tea, syrup, jams and jellies and as beverages. The main objectives of this study were to identify and characterise fungal pathogens associated with Roselle diseases based on their morphological and cultural characteristics and to determine the pathogenicity of four fungi infecting Roselle seedlings, namely Phoma exigua, Fusarium nygamai, Fusarium tgcq and Rhizoctonia solani in Penang. A total of 200 fungal isolates were obtained from 90 samples of symptomatic Roselle tissues. The isolates were identified based on cultural and morphological characteristics, as well as their pathogenicity. The fungal pathogen most frequently isolated was P. exigua (present in 45% of the samples), followed by F. nygamai (25%), Rhizoctonia solani (19%) and F. camptoceras (11%). Pathogenicity tests showed that P. exigua, F. nygamai, F. camptoceras and R. solani were able to infect both wounded and unwounded seedlings with different degrees of severity as indicated by the Disease severity (DS). R. solani was the most pathogenic fungus affecting both wounded and unwounded Roselle seedlings, followed by P. exigua that was highly pathogenic on wounded seedlings. F. nygamai was less pathogenic while the least pathogenic fungus was F. camptoceras, infecting only the unwounded seedlings but, surprisingly, not the wounded plants.
  3. Zakaria M, Rajpar MN
    Trop Life Sci Res, 2010 Dec;21(2):7-26.
    PMID: 24575196
    A comparison study was conducted to determine the bird species composition, relative abundance, species diversity and feeding guilds based on point count (PC) and mist netting (MN) at the Paya Indah Wetland Reserve (PIWR), Peninsular Malaysia. A total of 13872 bird observations belonging to 100 species and 38 families were recorded using the PC method over 15 consecutive months, and a total of 1478 bird individuals belonging to 65 species and 33 families were captured using the MN method over 1260 netting hours. The results showed that Treron vernans (1723 observations; 12.42%) was the most abundant bird species using the PC method, whereas Pycnonotus goiavier (378 individuals; 25.64%) was the most abundant bird species using the MN method. The Ardeidae (9 species; 23.68%) was the most dominant family using the PC method, but the Rallidae (6 species; 18.18%) was the most dominant family using the MN method. The PC method produced higher species diversity (Shannon's N1 = 31.22) and richness (Margalef's R1 = 10.42) than MN, whereas the MN method produced higher species evenness (McIntosh's E = 0.86) than the PC method. Frugivore/insectivore comprised of bulbuls, orioles, pigeons and starlings was the most dominant feeding guild in both methods (PC = 27.81% and MN = 32.88%). In contrast, carnivore was the rarest feeding guild in both methods (i.e. PC = 0.17% and MN = 0.20%). These findings indicate that the PC method is more efficient and produces better results than the MN method.
  4. Zainin, N. S., Lau, K. Y., Zakaria, M., Son, R., Abdull Razis, A. F., Rukayadi, Y.
    MyJurnal
    An awareness of Escherichia coli as a foodborne pathogen and illness causing bacterium has been increased among consumers. Moreover, there is demand for natural product in order to reduce synthetic product that can cause toxic to the human. In this study, antibacterial activity, in term of MIC, MBC and killing-time curve of methanolic extract of Boesenbergia rotunda have been tested against a standard E. coli ATCC 25922 and two E. coli isolated from milk products using Clinical and Laboratory Standard Institute (CLSI) methods. The results show that B. rotunda extract was susceptible to all E. coli strains. The MIC and MBC values of B. rotunda extract against E. coli ranged 0.019 mg/mL 2.5 mg/mL and 0.039 mg/mL – 5.0 µg/mL, respectively. Killing-time curves were constructed at concentrations of 0x MIC, 1/2x MIC, 1x MIC, and 2x MIC. All E. coli strains can be killed with concentration of 2x MIC after 2 hours. The results show that B. rotunda extract has potential antibacterial activity against E. coli.
  5. Radwan, H., Khalil, M., Annuar, F., Azmi, H., Zakaria, M. Z.
    MyJurnal
    Palm oil-based wax is a waste material from palm oil refining process. Recent prototyping
    activities have used industrial blue wax or synthetic wax to produce prototype parts by machining
    processes. The new palm oil-based wax blended with LLDPE reduces the use of synthetic wax for
    engineering applications. This paper studies the machining characteristic of two different composite
    blends: LLDPE/PALMAC 95 -16 Palm Oil-Based Wax and LLDPE/PALMAC 98-18 Palm Oil-Based
    Wax. Three machining characteristic results were recorded, namely; surface roughness, temperature
    and dimensional consistency.
  6. Eslaminejad T, Zakaria M
    Microb Pathog, 2012 Jun 02.
    PMID: 23063498 DOI: 10.1016/j.micpath.2012.05.009
    The Publisher regrets that this article is an accidental duplication of an article that has already been published, doi:10.1016/j.micpath.2012.05.010;. The duplicate article has therefore been withdrawn.
  7. Zakaria MP, Okuda T, Takada H
    Mar Pollut Bull, 2001 Dec;42(12):1357-66.
    PMID: 11827123
    Malaysian coasts are subjected to various threats of petroleum pollution including routine and accidental oil spill from tankers, spillage of crude oils from inland and off-shore oil fields, and run-off from land-based human activities. Due to its strategic location, the Straits of Malacca serves as a major shipping lane. This paper expands the utility of biomarker compounds, hopanes, in identifying the source of tar-balls stranded on Malaysian coasts. 20 tar-ball samples collected from the east and west coast were analyzed for hopanes and polycyclic aromatic hydrocarbons (PAHs). Four of the 13 tar-ball samples collected from the west coast of Peninsular Malaysia were identified as the Middle East crude oil (MECO) based on their biomarker signatures, suggesting tanker-derived sources significantly contributing the petroleum pollution in the Straits of Malacca. The tar-balls found on the east coast seem to originate from the offshore oil platforms in the South China Sea. The presence of South East Asian crude oil (SEACO) tar-balls on the west coast carry several plausible explanations. Some of the tar-balls could have been transported via sea currents from the east coast. The tankers carrying SEACO to other countries could have accidentally spilt the oil as well. Furthermore, discharge of tank washings and ballast water from the tankers were suggested based on the abundance in higher molecular weight n-alkanes and the absence of unresolved complex mixture (UCM) in the tar-ball samples. The other possibilities are that the tar-balls may have been originated from the Sumatran oil fields and spillage of domestic oil from oil refineries in Port Dickson and Malacca. The results of PAHs analysis suggest that all the tar-ball samples have undergone various extent of weathering through evaporation, dissolution and photooxidation.
  8. Yap CK, Shahbazi A, Zakaria MP
    Bull Environ Contam Toxicol, 2012 Dec;89(6):1205-10.
    PMID: 23052577 DOI: 10.1007/s00128-012-0838-x
    In this study, the ranges of pollutants found in the soft tissues of Perna viridis collected from Kg. Masai and Kg. Sg. Melayu, both located in the Straits of Johore, were 0.85-1.58 μg/g dry weight (dw) for Cd, 5.52-12.2 μg/g dw for Cu, 5.66-8.93 μg/g dw for Ni and 63.4-72.3 μg/g dw for Zn, and 36.4-244 ng/g dry weight for ∑PAHs. Significantly (p < 0.05) higher concentrations of Cd, Cu, Ni, Zn and ∑PAHs in the mussels were found in the water of a seaport site at Kg. Masai than a non-seaport site at Kg. Sg. Melayu population. The ratios of low molecular weight/high molecular weight hydrocarbons (2.94-3.42) and fluoranthene/pyrene (0.43-0.45) in mussels from both sites indicated the origin of the PAHs to be mainly petrogenic. This study has demonstrated the utility of using the soft tissues of P. viridis as a biomonitor of PAH contamination and bioavailability in the coastal waters of Peninsular Malaysia.
  9. Zakaria L, Sahak S, Zakaria M, Salleh B
    Trop Life Sci Res, 2009 Dec;20(2):119-25.
    PMID: 24575184 MyJurnal
    A total of 13 Colletotrichum isolates were obtained from different banana cultivars (Musa spp.) with symptoms of anthracnose. Colletotrichum isolates from anthracnose of guava (Psidium guajava) and water apple (Syzygium aqueum) were also included in this study. Based on cultural and morphological characteristics, isolates from banana and guava were identified as Colletotrichum musae and from water apple as Colletotrichum gloeosporiodes. Isolates of C. musae from banana and guava had similar banding patterns in a randomly amplified polymorphic DNA (RAPD) analysis with four random primers, and they clustered together in a UPGMA analysis. C. gloeosporiodes from water apple was clustered in a separate cluster. Based on the present study, C. musae was frequently isolated from anthracnose of different banana cultivars and the RAPD banding patterns of C. musae isolates were highly similar but showed intraspecific variations.
  10. Rajpar MN, Rajpar AH, Zakaria M
    Braz J Biol, 2022;84:e256160.
    PMID: 35137773 DOI: 10.1590/1519-6984.256160
    Riverine forests are unique and highly significant ecosystems that are globally important for diverse and threatened avian species. Apart from being a cradle of life, it also serves as a gene pool that harbors a variety of flora and fauna species (repeated below). Despite the fact, this fragile ecosystem harbored avian assemblages; it is now disappearing daily as a result of human activity. Determining habitat productivity using bird species is critical for conservation and better management in the future. Multiple surveys were conducted over a 15-month period, from January to March 2019, using the distance sampling point count method. A total of 250 point count stations were fixed systematically at 300 m intervals. In total, 9929 bird individuals were recorded, representing 57 species and 34 families. Out of 57 bird species, two were vulnerable, one was data deficient, one was nearly threatened, and the remaining 53 species were of least concern. The Eurasian Collard Dove - Streptopelia decaocto (14.641 ± 2.532/ha), White-eared Bulbul - Pycnonotus leucotis (13.398 ± 4.342/ha) and Common Babbler - Turdoides caudata (10.244 ± 2.345/ha) were the three first plenteous species having higher densities. However, the densities of three species, i.e., Lesser Whitethroat - Sylvia curruca, Gray Heron - Ardea cinerea and Pallas Fish Eagle - Haliaeetus leucoryphus, were not analyzed due to the small sample size. The findings of diversity indices revealed that riverine forest has harbored the diverse avian species that are uniformly dispersed across the forest. Moreover, recording the ten foraging guilds indicated that riverine forest is rich in food resources. In addition, the floristic structure importance value index results indicated that riverine forest is diverse and rich in flora, i.e. trees, shrubs, weeds and grass, making it an attractive and productive habitat for bird species.
  11. Shanmugam S, Jenkins SN, Mickan BS, Jaafar NM, Mathes F, Solaiman ZM, et al.
    Sci Rep, 2021 01 13;11(1):955.
    PMID: 33441591 DOI: 10.1038/s41598-020-78843-9
    Co-application of biochar and biosolids to soil has potential to mitigate N leaching due to physical and chemical properties of biochar. Changes in N cycling pathways in soil induced by co-application of biological amendments could further mitigate N loss, but this is largely unexplored. The aim of this study was to determine whether co-application of a biochar and a modified biosolids product to three pasture soils differing in texture could alter the relative abundance of N cycling genes in soil sown with subterranean clover. The biosolids product contained lime and clay and increased subterranean clover shoot biomass in parallel with increases in soil pH and soil nitrate. Its co-application with biochar similarly increased plant growth and soil pH with a marked reduction in nitrate in two coarse textured soils but not in a clayey soil. While application of the biosolids product altered in silico predicted N cycling functional genes, there was no additional change when applied to soil in combination with biochar. This supports the conclusion that co-application of the biochar and biosolids product used here has potential to mitigate loss of N in coarse textured soils due to N adsoption by the biochar and independently of microbial N pathways.
  12. Ngeow YF, Hema V, Zakaria M, Lee CH, Ramachandran S
    Malays J Pathol, 1997 Dec;19(2):127-32.
    PMID: 10879253
    First-void urine samples collected from sexually transmitted diseases (STD) clinic patients were examined by a nested polymerase chain reaction (PCR) and a commercial enzyme immunoassay (IDEIA Chlamydia) for the diagnosis of Chlamydia trachomatis urethritis or cervicitis. The primers for the PCR amplified a target in the major outer membrane protein (MOMP) gene in C trachomatis while the IDEIA detected genus-specific chlamydial lipopolysaccharide. Discrepant results were resolved by retesting urine specimens with a second (plasmid-based) PCR and taking urethral or endocervical swab results into consideration. For 231 men (chlamydial prevalence 20.4%), the sensitivity, specificity, positive and negative predictive values were 59.6%, 99.5%, 96.6% and 90.6% for urine IDEIA, 68.1%, 99.5%, 97% and 92.4% for urethral swab IDEIA and 97.9%, 99.5%, 97.9% and 99.5% for urine PCR. The corresponding rates for 66 women (chlamydial prevalence 54.6%) were 19.4%, 100%, 100% and 50.8% for urine IDEIA, 86.1%, 96.7%, 96.9% and 85.3% for endocervical swab IDEIA and 91.7%, 93.3%, 94.3% and 90.3% for urine PCR. Hence, in a high prevalence population, the urine IDEIA was a suitable alternative to the male urethral swab IDEIA but significantly less sensitive than the endocervical swab IDEIA. The urine PCR was, however, much more sensitive than the urine IDEIA for both men and women and could replace the endocervical swab IDEIA for the diagnosis of chlamydial cervicitis.
  13. Zakaria L, Yee TL, Zakaria M, Salleh B
    Trop Life Sci Res, 2011 May;22(1):71-80.
    PMID: 24575210 MyJurnal
    A total of 82 isolates of microfungi were isolated from 6 sandy soil samples collected from Teluk Aling beach, Pulau Pinang. The soil microfungi were isolated by using direct isolation, debris isolation and soil dilution techniques. Based on morphological characteristics, seven genera of microfungi were identified namely, Fusarium (42%), Aspergillus (24%), Trichoderma (13%), Curvularia (9%), Colletotrichum (6%), Helminthosporium (4%) and Penicillium (2%). The most common species isolated was Fusarium solani followed by Fusarium semitecum, Aspergillus niger, Trichoderma viride, Curvularia clavata, Curvularia lunata, Helminthosporium velutinum, Colletotrichum sp. and Penicillium chrysogenum. From the present study, it appears that the sandy beach contains a microfungi reservoir comprising of a variety of genera which contributes significantly to the ecological functioning of a marine ecosystem.
  14. Zakaria L, Yaakop AS, Salleh B, Zakaria M
    Trop Life Sci Res, 2010 Aug;21(1):101-7.
    PMID: 24575194 MyJurnal
    Endophytic fungi were isolated from different parts of healthy paddy plants (Oryza sativa). The most common endophytic fungal genus recovered was Fusarium, followed by Aspergillus, Curvularia, Penicillium, Gilmaniella and Arthrobotrys foliicola. Fusarium and Curvularia had higher occurrences in the seeds compared with the other fungi. Aspergillus was recovered mostly from leaf blades and Penicillium from the leaf sheath. Gilmaniella and A. foliicola were isolated only from the roots and leaf blade, respectively. The assemblage of endophytic fungi in healthy tissues of paddy plants may indicate that some of the fungi are possible latent pathogens and some may become saprophytic.
  15. Zakaria MB, Saito I, Yao XK, Wang RJ, Matsuura T
    Planta Med, 1989 Oct;55(5):477-8.
    PMID: 17262463
    Fibraurin, chasmanthin, and palmarin were isolated from the stems of FIBRAUREA CHLOROLEUCA, Fam. Menispermaceae. The structure of the minor constituent, palmarin, was determined by X-ray crystallographic analysis.
  16. Styring AR, Ragai R, Zakaria M, Sheldon FH
    Curr Zool, 2016 Aug;62(4):345-355.
    PMID: 29491923 DOI: 10.1093/cz/zow022
    Understanding foraging strategies of birds is essential to understanding mechanisms of their community assembly. To provide such information on a key Southeast Asian rainforest family, the babblers (Timaliidae), we evaluated foraging behavior and abundance in 7 morphologically and behaviorally similar sympatric species (Cyanoderma erythropterum,C. rufifrons,Stachyris maculata,S. nigricollis, S. poliocephala,Macronus ptilosus, andMixornis gularis) in 5 habitats defined by structural complexity: (1) continuous native rainforest, (2) logged native rainforest fragments, (3) mature industrial tree plantation, (4) young industrial plantation, and (5) oil palm plantation. Enough data were obtained to compare abundance in all 7 species and foraging behavior in 5. All species were common in forest fragments and mature industrial tree plantations and less so in continuous rainforest and young industrial plantations; onlyM. gularisoccurred in oil palm. In terms of foraging,M. gulariswas the greatest generalist;C. rufifronsforaged mainly on live leaves in the forest midstory; andS. maculata,C. erythropterum, andM. ptilosusforaged mainly on dead leaves suspended in understory vegetation at significantly different heights. The dead-leaf substrate depends on a rich supply of falling leaves and extensive understory structure, conditions most common in native forest and old industrial plantations, and less so in mature forest, young plantations, and oil palm. Because of the importance of foraging data to understanding and managing biodiversity, we encourage the development of foraging fields in eBird (ebird.org), so that birdwatchers may help collect these relatively rare data.
  17. Idzwan Zakaria M, Che Manshor N, Maw Pin T
    Arch Acad Emerg Med, 2023;11(1):e16.
    PMID: 36743703 DOI: 10.22037/aaem.v11i1.1613
    INTRODUCTION: A decision-making guideline on when to intubate an older person based on predictors of intubation outcome would be extremely beneficial. This study aimed to identify the associated factors that could predict the outcomes of endotracheal intubation among older adults in the Emergency Department (ED).

    METHODS: In this retrospective cross-sectional study, patients aged ≥65 years intubated at the ED of University of Malaya Medical Centre, Kuala Lumpur, Malaysia, from 2015 to 2019 were studied. The association between age, gender, place of inhabitation, Identification of Seniors at Risk (ISAR) score for frailty, Charlson Comorbidity Index (CCI), Acute Physiology and Chronic Health Evaluation-II (APACHE-II) score, indication for intubation, and diagnosis on admission with in-hospital mortality (primary outcome) and duration of ventilation, and length of stay (secondary outcomes) were evaluated using univariate analysis and Cox's regression survival analysis.

    RESULTS: 889 cases aged 65 years and above were studied (61.5% male). The rate of in-hospital mortality was 71.4%. There was a significant association between age (p < 0.001), nursing home residency (p = 0.008), CCI≥ 5 (p = 0.001), APACHE-II (p < 0.001), pre-intubation Glasgow Coma Scale (GCS) (p < 0.001), cardiac arrest as indication of intubation (p < 0.001), diagnosis on admission (p < 0.001), length of stay (p < 0.001), and length of ventilation (p = 0.003) and in-hospital mortality. Age ≥ 85 years (HR= 1.270; 95%CI=1.074 to 1.502) and 75 to 84 years (HR=1.642; 95%CI=1.167 to 2.076), cardiac arrest as indication of intubation (HR: 1.882; 95% CI: 1.554 - 2.279), and APACHE-II scores 25 - 34 (HR: 1.423; 95% CI: 1.171 - 1.730) and ≥ 35 (HR: 1.789; 95%CI: 1.418 - 2.256) were amongst the independent predictive factors of in-hospital mortality.

    CONCLUSION: Nearly three out of four individuals aged ≥65 years intubated at the ED died during the same admission. Older age, cardiac arrest as indication of intubation, and APACHE-II score were independent predictors of in-hospital mortality.

  18. Christie B, Musri N, Djustiana N, Takarini V, Tuygunov N, Zakaria MN, et al.
    Mater Today Bio, 2023 Dec;23:100815.
    PMID: 37779917 DOI: 10.1016/j.mtbio.2023.100815
    Conventional dentistry faces limitations in preserving tooth health due to the finite lifespan of restorative materials. Regenerative dentistry, utilizing stem cells and bioactive materials, offers a promising approach for regenerating dental tissues. Human dental pulp stem cells (hDPSCs) and bioactive materials like calcium phosphate (CaP) and silicate-based materials have shown potential for dental tissue regeneration. This systematic review aims to investigate the effects of CaP and silicate-based materials on hDPSCs through in vitro studies published since 2015. Following the PRISMA guidelines, a comprehensive search strategy was implemented in PubMed MedLine, Cochrane, and ScienceDirect databases. Eligibility criteria were established using the PICOS scheme. Data extraction and risk of bias (RoB) assessment were conducted, with the included studies assessed for bias using the Office of Health and Translation (OHAT) RoB tool. The research has been registered at OSF Registries. Ten in vitro studies met the eligibility criteria out of 1088 initial studies. Methodological heterogeneity and the use of self-synthesized biomaterials with limited generalizability were observed in the included study. The findings highlight the positive effect of CaP and silicate-based materials on hDPSCs viability, adhesion, migration, proliferation, and differentiation. While the overall RoB assessment indicated satisfactory credibility of the reviewed studies, the limited number of studies and methodological heterogeneity pose challenges for quantitative research. In conclusion, this systematic review provides valuable insights into the effects of CaP and silicate-based materials on hDPSCs. Further research is awaited to enhance our understanding and optimize regenerative dental treatments using bioactive materials and hDPSCs, which promise to improve patient outcomes.
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