Little is known about the diversity and roles of microbial communities in the South China Sea, especially the eastern
region. This study aimed to expand our knowledge on the diversity of these communities in Malaysian waters, as well as
their potential involvement in the breakdown or osmoregulation of dimethylsulphoniopropionate (DMSP). Water samples
were collected during local cruises (Kuching, Kota Kinabalu, and Semporna) from the SHIVA expedition and the diversity
of bacterial communities were analysed through the isolation and identification of 176 strains of cultured bacteria. The
bacteria were further screened for the existence of two key genes (dmdA, dddP) which were involved in competing,
enzymatically-mediated DMSP degradation pathways. The composition of bacterial communities in the three areas varied
and changes were mirrored in physico-chemical parameters. Riverine input was highest in Kuching, which was mirrored
by dominance of potentially pathogenic Vibrio sp., whereas the Kota Kinabalu community was more indicative of an
open ocean environment. Isolates obtained from Kota Kinabalu and Semporna showed that the communities in these
areas have potential roles in bioremediation, nitrogen fixing and sulphate reduction. Bacteria isolated from Kuching
displayed the highest abundance (44%) of both DMSP-degrading genes, while the bacterial community in Kota Kinabalu
had the highest percentage (28%) of dmdA gene occurrence and the dddP gene responsible for DMS production was
most abundant (33%) within the community in Semporna. To the best of our knowledge, this is the first study looking at
the diversity of culturable bacteria in coastal waters of East Malaysia and also their potential roles in the DMS(P) cycle.