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Proteomic and metabolomic study of wax apple (Syzygium samarangense) fruit during ripening process

Jamil NAM, Rahmad N, Rosli NHM, Al-Obaidi JR

Electrophoresis, 2018 12;39(23):2954-2964.
PMID: 30074628 DOI: 10.1002/elps.201800185

Wax apple is one of the underutilized fruits that is considered a good source of fibers, vitamins, minerals as well as antioxidants. In this study, a comparative analysis of the developments of wax fruit ripening at the proteomic and metabolomic level was reported. 2D electrophoresis coupled with MALDI-TOF/TOF was used to compare the proteome profile from three developmental stages named immature, young, and mature fruits. In general, the protein expression profile and the identified proteins function were discussed for their potential roles in fruit physiological development and ripening processes. The metabolomic investigation was also performed on the same samples using quadrupole LC-MS (LC-QTOF/MS). Roles of some of the differentially expressed proteins and metabolites are discussed in relation to wax apple ripening during the development. This is the first study investigating the changes in the proteins and metabolites in wax apple at different developmental stages. The information obtained from this research will be helpful in developing biomarkers for breeders and help the plant researchers to avoid wax apple cultivation problems such as fruit cracking.

Matched MeSH terms: Tandem Mass Spectrometry
Dispersive liquid-liquid microextraction combined with dispersive solid-phase extraction for gas chromatography with mass spectrometry determination of polycyclic aromatic hydrocarbons in aqueous matrices

Mohd Hassan FW, Muggundha Raoov, Kamaruzaman S, Sanagi MM, Yoshida N, Hirota Y, et al.

J Sep Sci, 2018 Oct;41(19):3751-3763.
PMID: 30125466 DOI: 10.1002/jssc.201800326

This study describes a dispersive liquid-liquid microextraction combined with dispersive solid-phase extraction method based on phenyl-functionalized magnetic sorbent for the preconcentration of polycyclic aromatic hydrocarbons from environmental water, sugarcane juice, and tea samples prior to gas chromatography with mass spectrometry analysis. Several important parameters affecting the extraction efficiency were investigated thoroughly, including the mass of sorbent, type and volume of extraction solvent, extraction time, type of desorption solvent, desorption time, type and amount of salt-induced demulsifier, and sample volume. Under the optimized extraction and gas chromatography-mass spectrometric conditions, the method revealed good linearity (10-100000 ng/L) with coefficient of determination (R2 ) of ≥0.9951, low limits of detection (3-16 ng/L), high enrichment factors (61-239), and satisfactory analyte recoveries (86.3-109.1%) with the relative standard deviations

Matched MeSH terms: Gas Chromatography-Mass Spectrometry
A Protein Decomplexation Strategy in Snake Venom Proteomics

Tan CH, Tan KY, Tan NH

Methods Mol Biol, 2019;1871:83-92.
PMID: 30276733 DOI: 10.1007/978-1-4939-8814-3_5

Snake venoms are complex mixtures of proteins and peptides that play vital roles in the survival of venomous snakes. As with their diverse pharmacological activities, snake venoms can be highly variable, hence the importance of understanding the compositional details of different snake venoms. However, profiling venom protein mixtures is challenging, in particular when dealing with the diversity of protein subtypes and their abundances. Here we described an optimized strategy combining a protein decomplexation method with in-solution trypsin digestion and mass spectrometry of snake venom proteins. The approach involves the integrated use of C18 reverse-phase high-performance liquid chromatography (RP-HPLC), sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and nano-electrospray ionization tandem mass spectrometry (nano-ESI-LC-MS/MS).

Matched MeSH terms: Tandem Mass Spectrometry
Application of response surface methodology for the optimization of polycyclic aromatic hydrocarbons degradation from potable water using photo-Fenton oxidation process

Abd Manan TSB, Khan T, Sivapalan S, Jusoh H, Sapari N, Sarwono A, et al.

Sci Total Environ, 2019 May 15;665:196-212.
PMID: 30772550 DOI: 10.1016/j.scitotenv.2019.02.060

Polycyclic aromatic hydrocarbons (PAHs) are carcinogenic compounds, composed of benzene rings. The objective of this research was to identify the optimum condition for the degradation of PAHs contaminated water using photo-Fenton oxidation process via response surface methodology (RSM). Aqueous solution was prepared and potable water samples were collected from water treatment plants in Perak Tengah, Perak, Malaysia in September 2016. The reaction time, pH, molarity of H2O2 and FeSO4 were analyzed followed by RSM using aqueous solution. A five level central composite design with quadratic model was used to evaluate the effects and interactions of these parameters. The response variable was the percentage of total organic carbon (TOC) removal. PAHs quantification was done using gas chromatography mass spectrometry analysis. The regression line fitted well with the data with R2 value of 0.9757. The lack of fit test gives the highest value of Sum of Squares (15,666.64) with probability F value 0.0001 showing significant quadratic model. The optimum conditions were established corresponding to the percentage of TOC removal. The PAHs removal efficiency for potable water samples ranged from 76.4% to 91% following the first order of kinetic rates with R2 values of >0.95. Conventional water treatment techniques are not effective for PAHs removal. Thus, advanced oxidation processes may be considered as an alternative to conventional water treatment techniques in Malaysia and other developing countries.

Matched MeSH terms: Gas Chromatography-Mass Spectrometry
Fulltext Social Defeat Stress Decreases mRNA for Monoamine Oxidase A and Increases 5-HT Turnover in the Brain of Male Nile Tilapia (Oreochromis niloticus)

Higuchi Y, Soga T, Parhar IS

Front Pharmacol, 2018;9:1549.
PMID: 30687104 DOI: 10.3389/fphar.2018.01549

Stress induces various neurobiological responses and causes psychiatric disorders, including depression. Monoamine oxidase A (MAO-A) plays an important role in various functions of the brain, such as regulation of mood, anxiety and aggression, and dysregulation of MAO-A is observed in stress-related psychiatric disorders. This study addressed the question whether acute social stress induces changes to transcriptional and/or post-transcriptional regulation of MAO-A expression in the brain. Using male Nile tilapia (Oreochromis niloticus), we investigated whether acute social stress, induced by the presence of a dominant male fish, changes the expression of MAO-A. We measured gene expression of MAO-A by quantitative PCR, enzymatic activity of MAO-A by the luminescent method, and 5-HT and 5-HIAA levels by liquid chromatography-mass spectrometry in the brain of socially stressed and control fish. Socially stressed males showed decreased MAO-A mRNA levels, consistent MAO-A enzymatic activity, increased 5-HT turnover in the brain, and elevated plasma cortisol levels, compared to controls. Our results suggest that acute social stress suppresses the transcription of MAO-A gene, enhances 5-HT metabolism but does not affect the production of MAO-A protein.

Matched MeSH terms: Mass Spectrometry
Quantification of VOCs and the development of odour wheels for rubber processing

Kamarulzaman NH, Le-Minh N, Fisher RM, Stuetz RM

Sci Total Environ, 2019 Mar 20;657:154-168.
PMID: 30543968 DOI: 10.1016/j.scitotenv.2018.11.451

The impacts of rubber variations (clonal, seasonal, and pre-treatment) were investigated to assess changes in the composition of volatile organic compounds (VOCs) emitted during rubber processing. VOC emissions from 14 different rubber types were evaluated by headspace micro-chamber (μ-TEC) extraction coupled with gas chromatography-mass spectrometry (GC-MS). Headspace extracted at 120 °C, which is equivalent to the drying temperature during rubber processing, revealed a significant number of odorants in terms of concentrations as well as odorant type. Volatile fatty acids (VFAs) such as acetic, propanoic, butanoic, pentanoic and hexanoic acids, were frequently detected at concentrations greater than their odour detection thresholds. Other odorous compounds including trimethylamine, p-cresol, butanone, indole, and phenol, were also detected. Emissions collected at ambient conditions represent odorants released during material storage (or maturation) and were dominated by benzene derivatives followed by ketones, aldehydes, esters, and acids. Emission composition during storage appeared to be governed by specific rubber properties such as protein and rubber moisture content. Seasonal variations revealed greater impacts on the concentration of VOCs for all studied clones, compared to pre-treatment variations, suggesting that the VOCs composition was seasonally dependent and may represents the 'potential' emissions from rubber as they are processed. A combination of sensorial and analytical measurements were used to produce odour wheels which may be used as tool to identify key malodours in onsite rubber processing. The linking of odours and odorants can facilitate communication between receptors (the public) and plant operators inorder to minimise odour impact and develop effective abatement and on-site management practices.

Matched MeSH terms: Gas Chromatography-Mass Spectrometry
Fulltext Classification of different pineapple varieties grown in Malaysia based on volatile fingerprinting and sensory analysis

Lasekan O, Hussein FK

Chem Cent J, 2018 Dec 19;12(1):140.
PMID: 30569201 DOI: 10.1186/s13065-018-0505-3

BACKGROUND: Pineapple is highly relished for its attractive sweet flavour and it is widely consumed in both fresh and canned forms. Pineapple flavour is a blend of a number of volatile and non-volatile compounds that are present in small amounts and in complex mixtures. The aroma compounds composition may be used for purposes of quality control as well as for authentication and classification of pineapple varieties.
RESULTS: The key volatile compounds and aroma profile of six pineapple varieties grown in Malaysia were investigated by gas chromatography-olfactometry (GC-O), gas-chromatography-mass spectrometry and qualitative descriptive sensory analysis. A total of 59 compounds were determined by GC-O and aroma extract dilution analysis. Among these compounds, methyl-2-methylbutanoate, methyl hexanoate, methyl-3-(methylthiol)-propanoate, methyl octanoate, 2,5-dimethyl-4-methoxy-3(2H)-furanone, δ-octalactone, 2-methoxy-4-vinyl phenol, and δ-undecalactone contributed greatly to the aroma quality of the pineapple varieties, due to their high flavour dilution factor. The aroma of the pineapples was described by seven sensory terms as sweet, floral, fruity, fresh, green, woody and apple-like.
CONCLUSION: Inter-relationship between the aroma-active compounds and the pineapples revealed that 'Moris' and 'MD2' covaried majorly with the fruity esters, and the other varieties correlated with lesser numbers of the fruity esters. Hierarchical cluster analysis (HCA) was used to establish similarities among the pineapples and the results revealed three main groups of pineapples.

Matched MeSH terms: Gas Chromatography-Mass Spectrometry
A Novel Liquid Chromatography Tandem Mass Spectrometry Technique using Multi-Period-Multi-Experiment of MRM-EPI-MRM3 with Library Matching for Simultaneous Determination of Amphetamine Type Stimulants Related Drugs in Whole Blood, Urine and Dried Blood Stain (DBS)-Application to Forensic Toxicology Cases in Malaysia

Zubaidi FA, Choo YM, Tan GH, Hamid HA, Choy YK

J Anal Toxicol, 2019 Aug 23;43(7):528-535.
PMID: 31141150 DOI: 10.1093/jat/bkz017

A novel mass spectrometry detection technique based on a multi-period and multi- experiment (MRM-EPI-MRM3) with library matching in a single run for fast and rapid screening and identification of amphetamine type stimulants (ATS) related drugs in whole blood, urine and dried blood stain was developed and validated. The ATS-related drugs analyzed in this study include ephedrine, pseudoephedrine, amphetamine, methamphetamine, MDMA (3,4-Methylenedioxymethamphetamine), MDA (3,4-Methylenedioxyamphetamine), MDEA (3,4-Methylenedioxy-N-ethylamphetamine) and phentermine. The relative standard deviation for inter and intraday was less than 15% while recoveries ranged from 80% to 120% for all three matrices, i.e., whole blood, urine and dried blood stain. All compounds gave library matching percentage of more than 85% based on the purity. This method was proven to be simple and robust, and provide high confident results complemented with library matching confirmation.

Matched MeSH terms: Mass Spectrometry
Fulltext Characterisation of Silver Nanoparticles using a Standardised Catharanthus Roseus Aqueous extract

Siti Zulaikha Ghozali, Mohd Nazri Ismail, Nor Hazwani Ahmad

Malaysian Journal of Medicine and Health Sciences, 2018;14(102):1-6.
MyJurnal

The biosynthesis of nanoparticles has been proposed as a cost-effective and environmental friendly alternative to chemical and physical methods. The present study was aimed to characterise Catharanthus roseus (C. roseus)-silver nanoparticles (AgNPs) using a standardised C. roseus aqueous extract. Methods: The standardisation was performed by using Liquid Chromatography/Time-of-Flight ion trap Mass Spectrometry. An optimised C. roseus-AgNPs have been previously synthesised. Further characterisation of C. roseus-AgNPs was evaluated by zeta potential analysis and fourier transform infrared spectroscopy (FTIR). Results: The chromatography analysis has revealed presence of thirteen possible indole alkaloids in C. roseus extract which were lochrovicine, lochnerine, vinleurosine, vindolinine, tabersonine, catharanthine, serpentine, catharosine, vincristine, catharine, ajmalicine, vinleurosine, and vindolicine. Zeta potential analysis exhibited the value at -16.6 mV. FTIR spectrum of C. roseus aqueous extract showed the absorption band at 3210.83 cm-1 (C-H stretch), 2934.11 (C-H bond), 1578.15 (N=O stretch), 1388.76 and 1314.89 (N=O bend), 1119.29 (C-O bond) and 729.94 (C-Cl bond). In comparison, FTIR spectrum of C. roseus-AgNP s showed the absorption band at 2925.01 and 2924.97 (C-H bond), 1622.93 (C-C=C symmetric stretch), 1383.19 and 1384.13 (N-O bend), 1037.92/1038.76/1238.3/1117.2 (C-O bond), 3169.4 (O-H bond), 774.59 and 691.53 (C-Cl bond). Conclusion: The present findings have shown that the C. roseus aqueous extract contains alkaloids that may responsible as reducing and stabilising agents in the synthesis of AgNPs.

Matched MeSH terms: Mass Spectrometry
Chemical constituents from the fruit peel of Goniothalamus scortechinii

Aryanti Abdullah, Zuriati Zakaria, Fasihuddin Ahmad, Mat-Salleh K, Laily B. Din

Sains Malaysiana, 2009;38.

The phytochemical investigation on the fruit peel of Goniothalamus scortechinii (Selayar Raja Ubat) obtained from Gunung Stong, Kelantan has resulted in the isolation of five compounds namely pinocembrine, altholactone, goniofufurone, goniotriol and goniopypyrone. Their structures were determined by extensive ultra violet (UV), infrared (IR), nuclear magnetic resonance (NMR) spectroscopy and gas chromatography-mass spectrum (GCMS) analysis.

Matched MeSH terms: Gas Chromatography-Mass Spectrometry
Fulltext Physico-chemical properties of the oils and fat from Crotalaria Cleomifolia seeds

Noor Wini Mazlan, Ikram M. Said

Sains Malaysiana, 2011;40(9):1037-1041.

The seeds of C. cleomifolia (locally known as kacang hantu) collected along Simpang Pulai - Berinchang Road, Cameron Highlands, was defatted with hexane and the resulting oil was analysed for their physico-chemical properties. The percentage yield of the oil was calculated as 5.3%. The acid value (1.2%), iodine value (85), peroxide value (0.6), saponification value (192.0) and unsaponifiable matter (2.3%) were determined to assess the quality of the oil. The physico-chemical characterisation showed that C. cleomifolia seeds oil is unsaturated semi-drying oil, with high saponifi cation and acidic values. The fatty acid composition of C. cleomifolia seed oil was determined by Gas Chromatography and Gas Chromatography-Mass Spectrometry (ToF). The seed oil of C. cleomifolia contained linoleic acid (57.59%) and palmitic acid (5.07%), the most abundant unsaturated and saturated fatty acids, respectively. The polyunsaturated triacylglycerol (TAG) in C. cleomifolia seed oil determined by reverse phase High performance Liquid Chromatography; contained as PLL (18.04%) followed by POL + SLL (11.92%), OOL (7.04%) and PLLn (6.31%). The melting and cooling point of the oil were 16.22°C and -33.54°C, respectively

Matched MeSH terms: Gas Chromatography-Mass Spectrometry
Fulltext Liquid Chromatography Mass Spectrometry (LC-MS) analysis in determining the saliva protein of orthodontic patients during retention phase

Awang-Kechik NH, Ahmad R, Doustjalali SR, Sabet NS, Abd-Rahman AN

J Clin Exp Dent, 2019 Mar;11(3):e269-e274.
PMID: 31001398 DOI: 10.4317/jced.55546

Background: The biological responses involved during retention phase have been studied for many years but little is known about the effect of saliva proteome during retention phase of post-orthodontic treatment. This study aims to identify the protein profiles during retention phase in relation to biological processes involved by Liquid Chromatography Mass Spectrometry (LC-MS) approach.
Material and Methods: A total of 5 ml of unstimulated saliva was collected from each subject (10 non-orthodontic patients and 15 post-orthodontic patients with 6-months retention phase). Samples were then subjected to LC-MS analysis. The expressed proteins were identified and compared between groups. Incisor irregularity for both maxilla and mandible were determined with Little's Irregularity Index at 6-months retention phase.
Results: 146 proteins and 135 proteins were expressed in control and 6-months retention phase group respectively. 15 proteins were identified to be co-expressed between groups. Immune system process was only detected in 6-months retention phase group. Detected protein in immune system process was identified as Tyrosine-protein kinase Tec. Statistical significant of incisor irregularity was only found in mandible at 6-months retention phase.
Conclusions: Our study suggests that immune system process protein which is Tyrosine-protein kinase Tec could be used as biomarker for prediction of stability during retention phase of post-orthodontic treatment. Key words:Orthodontics, proteomics, retention, LC-MS, saliva.

Matched MeSH terms: Tandem Mass Spectrometry
Fulltext Relative proteome quantification of alpha, beta, gamma and delta globin chains in early eluting peaks of Bio-Rad variant II® CE-HPLC of hemoglobin from healthy and beta-thalassemia subjects in Malaysia

Abdullah UYH, Ibrahim HM, Jassim HM, Salleh MZ, Kek TL, Fakhruzzaman Bin Noorizhab MN, et al.

Biochem Biophys Rep, 2019 Jul;18:100635.
PMID: 31061897 DOI: 10.1016/j.bbrep.2019.100635

This is the first report of QQQ-mass spectrometric identification and quantification of the Hb subunits, alpha, beta, delta and gamma globin peptides, derived from enzymatic-digestion of proteins in the early unknown peaks of the Bio-Rad cation-exchange chromatography of haemoglobin. The objectives were to assess the relationship of the quantity of the free alpha, beta, delta and gamma globin chains with the phenotypic diversity of beta-thalassaemias (β-thal). The results demonstrate that the pools of free globin chains in red blood cells were correlating with the severity of the disease in patients with different phenotypes of β-thal. The mechanism and the regulation of synthesis of free globin chains pool in a normal individual and in patients with different β-thal phenotypes could arise from several mechanisms which will require further investigation. The role of the free globin pool in patients with β-thal for development of novel therapeutic approaches based on these potential targets requires further investigation. Pertinent biomarkers improves the diagnosis of the β-thal, especially in low-income countries where they are most common and allows more effective therapeutic intervention leading to more successful therapeutic outcome.

Matched MeSH terms: Mass Spectrometry
Effect of Chitosan Nanoparticle-Loaded Thymus serpyllum on Hydrogen Peroxide-Induced Bone Marrow Stromal Cell Damage

Baig S, Azizan AHS, Raghavendran HRB, Natarajan E, Naveen S, Murali MR, et al.

Stem Cells Int, 2019;2019:5142518.
PMID: 30956670 DOI: 10.1155/2019/5142518

We have determined the protective effects of Thymus serpyllum (TS) extract and nanoparticle-loaded TS on hydrogen peroxide-induced cell death of mesenchymal stromal cells (MSCs) in vitro. Gas chromatography-mass spectroscopy confirmed the spectrum of active components in the extract. Out of the three different extracts, the hexane extract showed significant free radical scavenging activity. Treatment of MSCs with H2O2 (hydrogen peroxide) significantly increased intracellular cell death; however, pretreatment with TS extract and nanoparticle-loaded TS (200 μg/ml) suppressed H2O2-induced elevation of Cyt-c and MMP13 and increased the survival rates of MSCs. H2O2-induced (0.1 mM) changes in cytokines were attenuated in the extract and nanoparticles by pretreatment and cotreatment at two time points (p < 0.05). H2O2 increased cell apoptosis. In contrast, treatment with nanoparticle-loaded TS suppressed the percentage of apoptosis considerably (p < 0.05). Therefore, TS may be considered as a potential candidate for enhancing the effectiveness of MSC transplantation in cell therapy.

Matched MeSH terms: Mass Spectrometry
Fulltext Heavy metals contamination in paddy soil and water and associated dermal health risk among farmers

Siti Khairunnisaq Rudzi, Ho, Yu Bin, Intan Idayu Abd Kharni

Malaysian Journal of Medicine and Health Sciences, 2018;14(102):2-10.
MyJurnal

Introduction: This study aims to quantify the concentrations of Cu, Cr, Zn, Ni, Pb, As and Cd in paddy soil and water and assess their potential dermal health risk to the farmers at Kampung Sawah Sempadan, Malaysia. Methods: 72 water samples and 72 soil samples were collected and analysed using inductively coupled plasma mass spectrometry (ICP-MS). 117 respondents were interviewed using a questionnaire to obtain the exposure information for dermal health risk assessments. Results: All elements in water did not exceed the recommended concentration by Malaysia National Water Quality Standard (NWQS) and Food and Agriculture Organization (FAO). Nevertheless, the maxi- mum concentration of As (31.49 mg/kg) in paddy soil exceeded the Dutch Target Value for soil protection (29 mg/ kg). There was no significant chronic non-carcinogenic health risk for farmers working in the paddy soil and water (HQ

Matched MeSH terms: Mass Spectrometry
Characterization of hydrocarbons in smoke aerosols from burning of three tropical wood species

Tan hs, Mohd Radzi Abas, Norhayati Mohd Tahir

Sains Malaysiana, 2016;45:365-371.

A study has been carried out to characterize hydrocarbons emitted from the burning of three tropical wood species. The woods were burned to ember and smoke aerosols emitted were sampled using high volume sampler fitted with a pre-cleaned glass fibre filters. Hydrocarbons were extracted using ultrasonic agitation with dichloromethane-methanol (3:1 v/v) as solvent and the extracts obtained were then fractionated on silica-alumina column. Detection and quantification of aliphatic and polycyclic aromatic hydrocarbons (PAHs) compounds were carried out using GC-MS. The results indicated that the major aliphatic hydrocarbons characterized were straight chain n-alkanes in the range of C12-C35 with Cmax in the range of C27-C33. Rhizophora apiculata and Hevea brasiliensis wood smoke exhibited a weak odd to even carbon number predominance with carbon preference index (CPI) values greater than one whereas Melaleuca cajuputi wood smoke aerosols did not exhibit similar pattern with CPI obtained close to one. The results obtained also indicated that burning of these wood resulted in formation of PAHs compounds in their smoke aerosols with predominance of three to four rings PAHs over the two, five and lesser of six rings PAHs. PAH diagnostic ratios calculated except for Flan/(Flan+Py) and Indeno/(Indeno+BgP) were consistent with the ratios suggested for wood combustion source as reported in literatures. In the case of the latter, two diagnostic ratios, the values were generally lower than the range normally reported for wood combustion.

Matched MeSH terms: Gas Chromatography-Mass Spectrometry
Pencirian bakteria asid laktik dan sebatian aroma ikan pekasam

Tan WC, Lim SJ, Wan Aida Wan Mustapha

Sains Malaysiana, 2017;46:439-448.

Dalam kajian ini, bakteria asid laktik (LAB) serta sebatian aroma ikan pekasam daripada spesies yang berbeza
ditentukan. Persampelan ikan pekasam iaitu tilapia, loma, lampam, sepat dan gelama diperoleh daripada pembekal
Perusahaan Ikan Pekasam Kiah di Kuala Kangsar, Perak. Penentuan spesies LAB dijalankan melalui kaedah pencairan
bersiri, pengkulturan LAB, ujian katalase, ujian pewarnaan spora serta ujian pengesanan Gram bakteria dan morfologi.
Pengesahan spesies LAB dijalankan melalui pengekstrakan asid deoksiribonukleik (DNA), amplifikasi dengan tindak
balas rantaian polimerasi (PCR), analisis elektroforesis gel dan penjujukan DNA. Hasil jujukan DNA yang diperoleh
dibandingkan dengan jujukan dalam pangkalan data GenBank di NCBI menggunakan BLAST. Didapati Lactobacillus
brevis KB290 DNA dan Lactobacillus casei W56 wujud dalam pekasam tilapia, Lactobacillus plantarum 16 dalam
pekasam lampam, Lactobacillus casei BD-II kromosom dan Lactobacillus plantarum WCFS1 dalam pekasam sepat,
Corynebacterium vitaeruminis DSM 20294 dan Streptococcus anginosus C1051 dalam pekasam gelama. Manakala
Staphylococcus carnosus subsp. carnosus TM300 kromosom adalah LAB dominan dalam pekasam loma. Sementara
itu, sebatian aroma ditentukan melalui kaedah pengekstrakan cecair menggunakan pelarut metanol dan heksana.
Pemprofilan sebatian aroma dijalankan dengan kromatografi gas-spektometer jisim (GC-MS). Sebatian aroma dalam
ekstrak metanol dan heksana daripada lima jenis ikan pekasam dibandingkan. Bilangan sebatian aroma yang diekstrak
menggunakan metanol adalah lebih banyak berbanding dengan yang menggunakan heksana. Sebatian aroma yang
paling banyak dikesan adalah daripada pekasam loma. Asid karboksilik merupakan sebatian yang paling dominan
dalam ikan pekasam dan memberi bau hamis serta tengik.

Matched MeSH terms: Gas Chromatography-Mass Spectrometry
Detection of gliclazide in aqueous samples using liquid chromatography/time-of-flight/mass spectrometry

Fouad Fadhil Al-Qaim, Md Pauzi Abdullah, Jalifah Latip, Wan Mohd Afiq Wan Mohd Khalik, Nurfaizah Abu Tahrim, Nurul Auni Zainal Abidin, et al.

Sains Malaysiana, 2016;45:803-810.

The big challenge for the detection of pharmaceutical residues in water samples is the type of ionization mode in
terms of positive or negative ionization which plays an important role to identify and quantify the analytes using liquid
chromatography/mass spectrometry. An analytical method was applied to analysis of gliclazide (diabetic drug) in surface
water and wastewater from sewage treatment plants and hospitals. The proposed analytical method allows simultaneous
isolation and concentration procedure using solid phase extraction (Oasis HLB) prior to separation using high-performance
liquid chromatography. The detection and confirmation was achieved by applying time-of-flight analyzer. The limits of
quantification were as low as 1.4 ng/L (deionized water), 4 ng/L (surface water), 27 ng/L (hospital influent), 10 ng/L
(hospital effluent), 6 ng/L (sewage treatment plant effluent) and 21 ng/L (sewage treatment plant influent), respectively. On
average, good recoveries of higher than 87% were obtained for gliclazide in the studied samples. The proposed method
successfully determined and quantified gliclazide in surface water and wastewater. The results showed that gliclazide
is a persistent compound in sewage treatment effluents as well as in the recipient rivers. Gliclazide was detected in all
samples and the highest concentration was 130 ng/L in influent of sewage treatment plant.

Matched MeSH terms: Mass Spectrometry
Proteomic analysis of stored core oil palm trunk (COPT) sap identifying proteins Related to stress, disease resistance and differential gene/protein expression

Marhaini Mostapha, Noorhasmiera Abu Jahar, Sarani Zakaria, Sharifah Nabihah Syed Jaafar, Kamalrul Azlan Azizan, Wan Mohd Aizat

Sains Malaysiana, 2018;47:1259-1268.

Oil palm is the major crop grown and cultivated in various Asian countries such as Malaysia, Indonesia and Thailand.
The core of oil palm trunk (COPT) consists of high sugar content, hence suitable for synthesis of fine chemicals and
biofuels. Increase of sugar content was reported previously during prolonged COPT storage. However, until now, there
has been no report on protein profiles during storage. Therefore, in this study, protein expression of the COPT during the
storage period of one to six weeks was investigated using sodium dodecyl sulphate polyacrylamide gel electrophoresis
(SDS-PAGE) coupled with optical density quantification and multivariate analyses for measuring differentially expressed
proteins. Accordingly, protein bands were subjected to tryptic digestion followed by tandem mass spectrometry (nanoLCMS/MS)
protein identification. The results from SDS-PAGE showed consistent protein bands appearing across the biological
replicates ranging from 10.455 to 202.92 kDa molecular weight (MW) regions. The findings from the principal component
analysis (PCA) plot illustrated the separation pattern of the proteins at weeks 4 and 5 of storage, which was influenced
mainly by the molecular weights of 14.283, 25.543, 29.757, 30.549, 31.511, 34.585 and 84.395 kDa, respectively. The
majority of these proteins are identified as those involved in stress- and defense-related, disease resistance, as well
as gene/protein expression processes. Indeed, these proteins were mostly upregulated during the later storage period
suggesting that long-term storage may influence the molecular regulation of COPT sap.

Matched MeSH terms: Tandem Mass Spectrometry
Fulltext Health risk associated with aluminium exposure in groundwater: a cross-sectional study in an Orang Asli village in Jenderam Hilir, Selangor, Malaysia

Lina A, Shaharuddin M

Malaysian Journal of Public Health Medicine, 2017;17 Special(1):58-62.

The purpose of this study was to determine aluminium (Al) concentrations in groundwater used for drinking and cooking and its related health risk among population of 28th Mile Orang Asli village in Jenderam Hilir, Selangor, Malaysia. A total of 100 respondents were recruited, comprising 51 (51.0 %) male and 49 (49.0 %) female residents. Inductively coupled plasma mass spectrometry (ICP-MS) was used to determine Al concentration, while the LAMOTTE TRACER ORP PockeTester was used to measure pH levels. Statistical Package for Social Science (SPSS) was used to analyze the data. Results showed that Al concentration ranged from 0.041 - 0.136 mg/L with a mean of 0.136 + SD 0.041 mg/L, hence the values obtained were below the standard value (0.2 mg/L). pH levels ranged from 3.82 to 5.84, with a mean of 4.163 + SD 0.411, which is acidic and below the range permitted by the health authorities. The acidic nature may have an impact on the Al concentration in the water. The Hazard Index (HI) was found to be less than 1, thus there was no health risk of Al exposure in drinking water for the respondents involved. The study area was considered safe from having health risk associated with Al exposure.

Matched MeSH terms: Mass Spectrometry

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