We report the draft genome sequences of two antimicrobial-producing isolates, Burkholderia sp. strains MSh1 and MSh2, which were isolated from tropical peat swamp forest soil. Putative genes related to different antimicrobial production have been annotated in both genome sequences.
We report the draft genome sequence of Paenibacillus sp. strain MSt1, which has broad-range antimicrobial activity, isolated from tropical peat swamp soil. Genes involved in antimicrobial biosynthesis are found to be present in this genome.
A two-staged engineered wetland-based system was designed and constructed to treat raw domestic septage. Hydraulic loading rates (HLRs) of 8.75 and 17.5 cm/d were studied with four and eight daily dosings at the second stage of the system to investigate the influence of the regimes on septage treatment. Removal of organic matter (OM) was found to be HLR dependent, where the results indicated that the increase of HLR from 8.75 to 17.5 cm/d impaired the overall level of treatment in the wetland units. Effluent of wetland fed at HLR 17.5 cm/d presented significantly lower oxygen reduction potential and dissolved oxygen values than wetland fed at 8.75 cm/d, indicative of the occurrence of less aerobic and reductive conditions in the bed. The reoxygenation capability of the wetland units was found to be heavily affected by the dosing frequency especially under high hydraulic load (17.5 cm/d). NH3-N degradation was found to decrease with statistical importance when the wetland was flushed two times more frequently with smaller batches of influent. The number of hydraulic load fractionings did not seem to affect the level of treatments of OM and ammonia for both the wetlands fed under the lower HLR of 8.75 cm/d. Prediction of hydraulic limits and management of the feeding strategies are important in the vertical type of engineered wetlands to guarantee the treatment performance and minimize the chances of filter clogging.
The aim of this study was to isolate and identify Actinobacteria from Malaysia mangrove forest and screen them for production of antimicrobial secondary metabolites. Eighty-seven isolates were isolated from soil samples collected at 4 different sites. This is the first report to describe the isolation of Streptomyces, Mycobacterium, Leifsonia, Microbacterium, Sinomonas, Nocardia, Terrabacter, Streptacidiphilus, Micromonospora, Gordonia, and Nocardioides from mangrove in east coast of Malaysia. Of 87 isolates, at least 5 isolates are considered as putative novel taxa. Nine Streptomyces sp. isolates were producing potent antimicrobial secondary metabolites, indicating that Streptomyces isolates are providing high quality metabolites for drug discovery purposes. The discovery of a novel species, Streptomyces pluripotens sp. nov. MUSC 135(T) that produced potent secondary metabolites inhibiting the growth of MRSA, had provided promising metabolites for drug discovery research. The biosynthetic potential of 87 isolates was investigated by the detection of polyketide synthetase (PKS) and nonribosomal polyketide synthetase (NRPS) genes, the hallmarks of secondary metabolites production. Results showed that many isolates were positive for PKS-I (19.5%), PKS-II (42.5%), and NRPS (5.7%) genes, indicating that mangrove Actinobacteria have significant biosynthetic potential. Our results highlighted that mangrove environment represented a rich reservoir for isolation of Actinobacteria, which are potential sources for discovery of antimicrobial secondary metabolites.
This paper presents a two-staged, pilot-scale vertical flow engineered wetland-based septage treatment system (VFEWs), which was designed and constructed in Curtin University Sarawak Campus to determine the system efficiency in treatment of septage. The treatment system consists of storage tanks, vertical flow wetlands, and a network of influent and effluent distribution pipes. The first stage of the VFEWs treatment system consists of three vertical flow wetlands placed in parallel to provide pre-treatment to raw septage to reduce solids and organic matters mainly by physical filtration and sedimentation processes. The percolate from the first stage is then further treated in the second stage, with four vertical flow wetlands, each with variation in operational regime and substrate (filter) type. The influences of various system and application-related parameters such as substrate material, presence of plants and plant types, and septage feeding practices (solid loading rate (SLR), batch and intermittent loading, and frequency of daily feeding) on pollutant removal efficiency were studied. Results from the first stage wetlands indicate that the removal of total solids and organic matter (BOD and COD) from the raw septage is promising (> 80%) at both SLR of 100 kg TS/m2 .yr and 250 kg TS/m2 .yr, respectively. However, a higher SLR decreased the average NH3-N removal efficiency. The findings on bed clogging assessment during the study period are also presented in this paper. Validation and expansion of these results are carried out with ongoing assessments on the system performance.
There are two main reasons that motivate people to detect outliers; the first is the researchers' intention; see the example of Mr Haldum's cases in Barnett and Lewis. The second is the effect of outliers on analyses. This article does not differentiate between the various justifications for outlier detection. The aim was to advise the analyst about observations that are isolated from the other observations in the data set. In this article, we introduce the eigenstructure based angle for outlier detection. This method is simple and effective in dealing with masking and swamping problems. The method proposed is illustrated and compared with Mahalanobis distance by using several data sets.
Setiu Wetland is located in the southern part of South China Sea, Malaysia. This wetland has diverse ecosystems that represent a vast array of biological diversity and abundance in utilizable natural resources. However, there are large scales of aquaculture activities within and nearby the wetland which could threaten the ecosystems of this area. Thus, the main goal of the study was to assess the impact of these activities through the measurement of physico-chemical water quality parameters and then compare this to a previous study carried out in the same study area. The parameters (salinity, temperature, pH, dissolved oxygen, biological oxygen demand and total suspended solids) were monitored monthly at the surface water from July to October 2008. The results showed that the impact of aquaculture activities on the water quality in the area with dissolved oxygen and total suspended solids concentrations were considerably lower than those observed previously. With respect to the Malaysian Marine Water Quality Criteria and Standard, most of the level of parameters measured remained Class 1, suggesting the physico-chemical environment were in line with sustainable conservation of the marine protected areas and marine parks of this wetland area.
Persicaria hydropiper (L.) Delarbre, belonging to Polygonaceae family, is a common weed found in most of the temperate countries including Bangladesh, China, Malaysia, and Japan. The plant is also referred to as "marsh pepper" or "smart weed." It appears to be a useful herb with evidence-based medicinal properties. The present work addresses the botanical description, traditional uses, phytochemistry, pharmacology, and toxicology of P. hydropiper. All plant parts have been commonly used in the traditional systems of medicines. Flavonoids are the major group of phytochemical components followed by drimane-type sesquiterpenes and sesquiterpenoids, as well as phenylpropanoids. Different extracts and plant parts showed remarkable pharmacological activities including antioxidant, antibacterial, antifungal, antihelminth, antifeedant, cytotoxicity, anti-inflammatory, antinociceptive, oestrogenicity, antifertility, antiadipogenicity, and neuroprotection. Mutagenicity and acute and subchronic toxicities of the plant were also reported. P. hydropiper has tremendous medicinal properties that could further be investigated for the development of evidence-based herbal products.
Wetlands are regarded as one of the most important ecosystems on Earth due to various ecosystem services provided by them such as habitats for biodiversity, water purification, sequestration, and flood attenuation. The Al Hawizeh wetland in the Iran-Iraq border was selected as a study area to evaluate the changes. Maximum likelihood classification was used on the remote sensing data acquired during the period of 1985 to 2013. In this paper, five types of land use/land cover (LULC) were identified and mapped and accuracy assessment was performed. The overall accuracy and kappa coefficient for years 1985, 1998, 2002, and 2013 were 93% and 0.9, 92% and 0.89, 91% and 0.9, and 92% and 0.9, respectively. The classified images were examined with post-classification comparison (PCC) algorithm, and the LULC alterations were assessed. The results of the PCC analysis revealed that there is a drastic change in the area and size of the studied region during the period of investigation. The wetland lost ~73% of its surface area from 1985 to 2002. Meanwhile, post-2002, the wetland underwent a restoration, as a result of which, the area increased slightly and experienced an ~29% growth. Moreover, a large change was noticed at the same period in the wetland that altered ~62% into bare soil in 2002. The areal coverage of wetland of 3386 km(2) in 1985 was reduced to 925 km(2) by 2002 and restored to 1906 km(2) by the year 2013. Human activities particularly engineering projects were identified as the main reason behind the wetland degradation and LULC alterations. And, lastly, in this study, some mitigation measures and recommendations regarding the reclamation of the wetland are discussed. Based on these mitigate measures, the discharge to the wetland must be kept according to the water requirement of the wetland. Moreover, some anthropogenic activities have to be stopped in and around the wetland to protect the ecology of the wetland.
Horizontal subsurface-flow (HSF) constructed wetland incorporating baffles was developed to facilitate upflow and downflow conditions so that the treatment of pollutants could be achieved under multiple aerobic, anoxic and anaerobic conditions sequentially in the same wetland bed. The performances of the baffled and conventional HSF constructed wetlands, planted and unplanted, in the removal of azo dye Acid Orange 7 (AO7) were compared at the hydraulic retention times (HRT) of 5, 3 and 2 days when treating domestic wastewater spiked with AO7 concentration of 300 mg/L. The planted baffled unit was found to achieve 100%, 83% and 69% AO7 removal against 73%, 46% and 30% for the conventional unit at HRT of 5, 3 and 2 days, respectively. Longer flow path provided by baffled wetland units allowed more contact of the wastewater with the rhizomes, microbes and micro-aerobic zones resulting in relatively higher oxidation reduction potential (ORP) and enhanced performance as kinetic studies revealed faster AO7 biodegradation rate under aerobic condition. In addition, complete mineralization of AO7 was achieved in planted baffled wetland unit due to the availability of a combination of aerobic, anoxic and anaerobic conditions.
Poor water quality is a serious problem in the world which threatens human health, ecosystems, and plant/animal life. Prediction of surface water quality is a main concern in water resource and environmental systems. In this research, the support vector machine and two methods of artificial neural networks (ANNs), namely feed forward back propagation (FFBP) and radial basis function (RBF), were used to predict the water quality index (WQI) in a free constructed wetland. Seventeen points of the wetland were monitored twice a month over a period of 14 months, and an extensive dataset was collected for 11 water quality variables. A detailed comparison of the overall performance showed that prediction of the support vector machine (SVM) model with coefficient of correlation (R(2)) = 0.9984 and mean absolute error (MAE) = 0.0052 was either better or comparable with neural networks. This research highlights that the SVM and FFBP can be successfully employed for the prediction of water quality in a free surface constructed wetland environment. These methods simplify the calculation of the WQI and reduce substantial efforts and time by optimizing the computations.
A novel Streptomyces, strain MUSC 26(T), was isolated from mangrove soil at Tanjung Lumpur, Malaysia. The bacterium was observed to be Gram-positive and to form grayish yellow aerial and substrate mycelium on ISP 7 agar. A polyphasic approach was used to study the taxonomy of strain MUSC 26(T), which shows a range of phylogenetic and chemotaxonomic properties consistent with those of the members of the genus Streptomyces. The cell wall peptidoglycan was determined to contain LL-diaminopimelic acid. The predominant menaquinones were identified as MK-9 (H8) and MK-9(H6). The polar lipids detected were identified as diphosphatidylglycerol, phosphatidylinositol, phosphatidylethanolamine, hydroxyphosphatidylethanolamine, phosphatidylmethylethanolamine and hydroxyphosphatidylmethylethanolamine. The predominant cellular fatty acids (>10.0 %) were identified as anteiso-C15:0 (31.4 %), iso-C16:0 (16.3 %), iso-C15:0 (13.9 %) and anteiso-C17:0 (12.6 %). The cell wall sugars were found to be galactose, glucose, mannose, ribose and rhamnose. These results suggest that MUSC 26(T) should be placed within the genus Streptomyces. Phylogenetic analysis indicated that closely related strains include Streptomyces qinglanensis 172205(T) (96.5 % sequence similarity), S. sodiiphilus YIM 80305(T) (96.5 %) and S. rimosus subsp. rimosus ATCC 10970(T) (96.4 %). DNA-DNA relatedness values between MUSC 26(T) and closely related type strains ranged from 17.0 ± 2.2 to 33.2 ± 5.3 %. Comparison of BOX-PCR fingerprints indicated MUSC 26(T) presents a unique DNA profile. The DNA G+C content was determined to be 74.6 mol%. Based on this polyphasic study of MUSC 26(T), it is concluded that this strain represents a novel species, for which the name Streptomyces gilvigriseus sp. nov. is proposed. The type strain is MUSC 26(T) (=DSMZ 42173(T) = MCCC 1K00504(T)).
An innovative design of upflow constructed wetland-microbial fuel cell (UFCW-MFC) planted with cattail was used for simultaneous wastewater treatment and electricity generation. The electrodes material employed in the study was carbon felt. The main aim of this study is to assess the performance of the UFCW coupling with MFC in term of ability to treat wastewater and the capability to generate bioelectricity. The oxidation reduction potential (ORP) and dissolved oxygen (DO) profile showed that the anaerobic and aerobic regions were well developed in the lower and upper bed, respectively, of UFCW-MFC. Biodegradation of organic matter, nitrification and denitrification was investigated and the removal efficiencies of COD, NO3(-), NH4(+) were 100%, 40%, and 91%, respectively. The maximum power density of 6.12 mW m(-2) and coulombic efficiency of 8.6% were achieved at electrode spacing of anode 1 (A1) and cathode (15 cm).
Peninsular Malaysia has gone through fast development during recent decades resulting in the release of large amounts of petroleum and its products into the environment. Aliphatic hydrocarbons are one of the major components of petroleum. Surface sediment samples were collected from five rivers along the west coast of Peninsular Malaysia and analyzed for aliphatic hydrocarbons. The total concentrations of C10 to C36 n-alkanes ranged from 27,945 to 254,463ng·g(-1)dry weight (dw). Evaluation of various n-alkane indices such as carbon preference index (CPI; 0.35 to 3.10) and average chain length (ACL; 26.74 to 29.23) of C25 to C33 n-alkanes indicated a predominance of petrogenic source n-alkanes in the lower parts of the Rivers, while biogenic origin n-alkanes from vascular plants are more predominant in the upper parts, especially in less polluted areas. Petrogenic sources of n-alkanes are predominantly heavy and degraded oil versus fresh oil inputs.
Tropical ectotherms are predicted to be especially vulnerable to climate change because their thermal tolerance limits generally lie close to current maximum air temperatures. This prediction derives primarily from studies on insects and lizards and remains untested for other taxa with contrasting ecologies. We studied the HCT (heat coma temperatures) and ULT (upper lethal temperatures) of 40 species of tropical eulittoral snails (Littorinidae and Neritidae) inhabiting exposed rocky shores and shaded mangrove forests in Oceania, Africa, Asia and North America. We also estimated extremes in animal body temperature at each site using a simple heat budget model and historical (20 years) air temperature and solar radiation data. Phylogenetic analyses suggest that HCT and ULT exhibit limited adaptive variation across habitats (mangroves vs. rocky shores) or geographic locations despite their contrasting thermal regimes. Instead, the elevated heat tolerance of these species (HCT = 44.5 ± 1.8°C and ULT = 52.1 ± 2.2°C) seems to reflect the extreme temperature variability of intertidal systems. Sensitivity to climate warming, which was quantified as the difference between HCT or ULT and maximum body temperature, differed greatly between snails from sunny (rocky shore; Thermal Safety Margin, TSM = -14.8 ± 3.3°C and -6.2 ± 4.4°C for HCT and ULT, respectively) and shaded (mangrove) habitats (TSM = 5.1 ± 3.6°C and 12.5 ± 3.6°C). Negative TSMs in rocky shore animals suggest that mortality is likely ameliorated during extreme climatic events by behavioral thermoregulation. Given the low variability in heat tolerance across species, habitat and geographic location account for most of the variation in TSM and may adequately predict the vulnerability to climate change. These findings caution against generalizations on the impact of global warming across ectothermic taxa and highlight how the consideration of nonmodel animals, ecological transitions, and behavioral responses may alter predictions of studies that ignore these biological details.
In tropical regions, different species of fiddler crabs coexist on the mangrove floor, which sometimes makes it difficult to define species-specific habitat by visual inspection. The aim of this study is to find key environmental parameters which affect the distribution of fiddler crabs and to determine the habitats in which each species was most abundant. Crabs were collected from 19 sites within the mudflats of Sepang-Lukut mangrove forest. Temperature, porewater salinity, organic matter, water content, carbon and nitrogen content, porosity, chlorophyll content, pH, redox potential, sediment texture and heavy metals were determined in each 1 m2 quadrate. Pearson correlation indicated that all sediment properties except pH and redox potential were correlated with sediment grain size. Canonical correspondence analysis (CCA) indicated that Uca paradussumieri was negatively correlated with salinity and redox potential. Sand dwelling species, Uca perplexa and Uca annulipes, were highly dependent on the abundance of 250 μm and 150 μm grain size particles in the sediment. Canonical Discriminative Analysis (CDA) indicated that variation in sediment grain size best explained where each crab species was most abundant. Moreover, U. paradussumieri commonly occupies muddy substrates of low shore, while U. forcipata lives under the shade of mangrove trees. U. annulipes and U. perplexa with the high number of spoon tipped setae on their second maxiliped are specialized to feed on the sandy sediments. U. rosea and U. triangularis are more common on muddy sediment with high sediment density. In conclusion, sediment grain size that influences most sediment properties acts as a main factor responsible for sediment heterogeneity. In this paper, the correlation between fiddler crab species and environmental parameters, as well as the interaction between sediment characteristics, was explained in order to define the important environmental factors in fiddler crab distributions.
In this study, the treatment of septage (originating from septic tanks) was carried out in a pilot-scale, two-staged, vertical-flow engineered wetland (VFEW). Palm kernel shells (PKS) were incorporated as part of the VFEW's substrate (B-PKS), to compare its organic matter (OM) and nitrogen (N) removal efficiency against wetlands with only sand substrates (B-SD). The results revealed satisfactory OM removal with >90% reduction efficiencies at both wetlands B-PKS and B-SD. No increment of chemical oxygen demand (COD) concentration was observed in the effluent of B-PKS. Ammonia load removal efficiencies were comparable (>91% and 95% in wetland B-PKS and B-SD, respectively). However, nitrate accumulation was observed in the effluent of B-SD where PKS was absent. This was due to the limited denitrification in B-SD, as sand is free of carbon. A lower nitrate concentration was associated with higher COD concentration in the effluent at B-PKS. This study has shown that the use of PKS was effective in improving the N removal efficiency in engineered wetlands.
In this study, agriculture biomass was used to remove dissolved organic matter from peat swamp runoff. The functional groups and morphological properties of 6 tropical agriculture biomasses (coconut husk, rice husk, empty fruit bunch, sago hampas, saw dust and banana trunk) in their raw and citric acid–treated states were examined. The Fourier transform infrared (FTIR) spectra showed that various biomasses were typically characterised with lignocellulosic compounds. The spectra analysis further demonstrated that citric acid treatment resulted in the dissolution of lignin and hemicelluloses to various extents where carboxyl groups were also introduced. These changes hypothetically suggest improved adsorption ability. Treatment of peat swamp runoff with various untreated biomasses showed no adsorption. With the modified biomass, adsorption was evidenced, with rice husk illustrating the highest removal efficiency of 60% to 65%.The biosorbent can be used in the water treatment process especially for treating water with a high dissolved organic matter content. The spent sorbent can be subsequently applied as a soil conditioner as the dissolved organic fraction, commonly known as humic matter, possesses important agricultural value.
The mangrove forests of Southeast Asia are highly biodiverse and provide multiple ecosystem services upon which millions of people depend. Mangroves enhance fisheries and coastal protection, and store among the highest densities of carbon of any ecosystem globally. Mangrove forests have experienced extensive deforestation owing to global demand for commodities, and previous studies have identified the expansion of aquaculture as largely responsible. The proportional conversion of mangroves to different land use types has not been systematically quantified across Southeast Asia, however, particularly in recent years. In this study we apply a combined geographic information system and remote sensing method to quantify the key proximate drivers (i.e., replacement land uses) of mangrove deforestation in Southeast Asia between 2000 and 2012. Mangrove forests were lost at an average rate of 0.18% per year, which is lower than previously published estimates. In total, more than 100,000 ha of mangroves were removed during the study period, with aquaculture accounting for 30% of this total forest change. The rapid expansion of rice agriculture in Myanmar, and the sustained conversion of mangroves to oil palm plantations in Malaysia and Indonesia, are identified as additional increasing and under-recognized threats to mangrove ecosystems. Our study highlights frontiers of mangrove deforestation in the border states of Myanmar, on Borneo, and in Indonesian Papua. To implement policies that conserve mangrove forests across Southeast Asia, it is essential to consider the national and subnational variation in the land uses that follow deforestation.
Constructed wetland (CW) is a low-cost alternative technology to treat wastewater. This study was conducted to co-treat landfill leachate and municipal wastewater by using a CW system. Typha domingensis was transplanted to CW, which contains two substrate layers of adsorbents, namely, ZELIAC and zeolite. Response surface methodology and central composite design have been utilized to analyze experimental data. Contact time (h) and leachate-to-wastewater mixing ratio (%; v/v) were considered as independent variables. Colour, COD, ammonia, nickel, and cadmium contents were used as dependent variables. At optimum contact time (50.2 h) and leachate-to-wastewater mixing ratio (20.0%), removal efficiencies of colour, COD, ammonia, nickel, and cadmium contents were 90.3%, 86.7%, 99.2%, 86.0%, and 87.1%, respectively. The accumulation of Ni and Cd in the roots and shoots of T. domingensis was also monitored. Translocation factor (TF) was >1 in several runs; thus, Typha is classified as a hyper-accumulator plant.