Displaying publications 61 - 80 of 366 in total

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  1. Fulltext Separation and identification of bromelain-generated antibacterial peptides from Actinopyga lecanora
    Ghanbari R, Ebrahimpour A
    Food Sci Biotechnol, 2018 Apr;27(2):591-598.
    PMID: 30263784 DOI: 10.1007/s10068-017-0267-z
    Actinopyga lecanora, as a rich protein source was hydrolysed to generate antibacterial bioactive peptides using different proteolytic enzymes. Bromelain hydrolysate, after 1 h hydrolysis, exhibited the highestantibacterial activities against Pseudomonas aeruginosa, Pseudomonas sp., Escherichia coli and Staphylococcus aureus. Two dimensional fractionation strategies, using a semi-preparative RP-HPLC and an isoelectric-focusing electrophoresis, were applied for peptide profiling. Furthermore, UPLC-QTOF-MS was used for peptides identification; 12 peptide sequences were successfully identified. The antibacterial activity of purified peptides from A. lecanora on P. aeruginosa, Pseudomonas sp., E. coli and S. aureus was investigated. These identified peptides exhibited growth inhibition against P. aeruginosa, Pseudomonas sp., E. coli and S. aureus with values ranging from 18.80 to 75.30%. These results revealed that the A. lecanora would be used as an economical protein source for the production of high value antibacterial bioactive peptides.
    Matched MeSH terms: Pseudomonas; Pseudomonas aeruginosa
  2. Isolation and characterization of bacteria degrading Sumandak and South Angsi Oils
    Ainon Hamzah, Amir Rabu, Raja Farzarul Hanim Raja Azmy, Noor Ainni Yussoff
    Sains Malaysiana, 2010;39:161-168.
    Four species of bacteria, Acinetobacter lwoffii, Aeromonas hydrophila, Pseudomonas aeruginosa and Pseudomonas putida, were isolated from soil contaminated with hydrocarbons and selected for the determination of growth requirements and the ability to degrade petroleum hydrocarbon. The bacteria were grown in mineral salt medium (MSM) supplemented with two types of crude oil, either Sumandak or South Angsi at 1% (v/v) concentration. The optimum pH for growth of A. hydrophila and P. aeruginosa was 6.5 when grown with Sumandak and South Angsi oil. For A. lwoffii and P. putida the optimum pH for growth with Sumandak and South Angsi oil was 6.5 or 7.0, respectively. The growth of P. aeruginosa was the highest in MSM when supplemented with 1% South Angsi oil and 0.5% tryptone at pH 6.5 while, in Sumandak oil the growth was the highest when yeast extract was added. Gas chromatography analysis showed that the South Angsi crude oil components of C12 to C25 were more extensively degraded by A. lwoffii after 24 h of incubation compared to the other bacteria over the same period.
    Matched MeSH terms: Pseudomonas aeruginosa; Pseudomonas putida
  3. Detection of toluene degradation in bacteria isolated from oil contaminated soils
    Ainon Hamzah, Tavakoli A, Amir Rabu
    Sains Malaysiana, 2011;40:1231-1235.
    Toluene (C7H8) a hydrocarbon in crude oil, is a common contaminant in soil and groundwater. In this study, the ability to degrade toluene was investigated from twelve bacteria isolates which were isolated from soil contaminated with oil. Out of 12 bacterial isolates tested, most of Pseudomonas sp. showed the capability to grow in 1 mM of toluene compared with other isolates on the third day of incubation. Based on enzyme assays towards toluene monooxygenase, Pseudomonas aeruginosa UKMP-14T and Bacillus cereus UKMP-6G were shown to have the highest ability to degrade toluene. The toluene monoxygenase activity was analysed by using two calorimetric methods, Horseradish peroxidase (HRP) and indole-indigo. Both of the methods measured the production of catechol by the enzymatic reaction of toluene monooxygenase. In the HRP assay, the highest enzyme activity was 0.274 U/mL, exhibited by Pseudomonas aeruginosa UKMP-14T. However, for indole-indigo assay, Bacillus cereus UKMP-6G produced the highest enzyme activity of 0.291 U/ml. Results from both experiments showed that Pseudomonas aeruginosa UKMP-14T and Bacillus cereus UKMP-6G were able to degrade toluene.
    Matched MeSH terms: Pseudomonas; Pseudomonas aeruginosa
  4. The potential of endophytic bacteria as a biological control agent for ganoderma disease In oil palm
    Nur Rashyeda Ramli, Maizatul Suriza Mohamed, Idris Abu Seman, Madihah Ahmad Zairun, Nasyaruddin Mohamad
    Sains Malaysiana, 2016;45:401-409.
    This study was conducted to screen the endophytic bacteria as a biological control agent (BCA) against Ganoderma boninense. A total of 581 endophytic bacteria were successfully isolated from symptomless oil palm root tissues at Teluk Intan, Perak, Malaysia. Three endophytic bacteria, Pseudomonas aeruginosa GanoEB1, Burkholderia cepacia GanoEB2, and Pseudomonas syringae GanoEB3 were found to have a potential as BCA based on their percentage inhibition of radial growth (PIRG) in dual culture and culture filtrate tests. Two nursery trials were conducted to evaluate the capability of these bacteria to suppress Ganoderma disease in oil palm seedlings that were artificially infected with G. boninense using rubber wood block (RWB) sitting technique. The percentage of disease incidence (DI), severity of foliar symptoms (SFS) and dead seedlings were used as the assessment tools. As a result, DI and SFS have developed much slower in the seedlings that were pre-treated with bacteria compared to untreated seedlings. After 6 months of inoculation, Ganoderma disease incidence was reduced from 62-75% in the seedlings treated with P. aeruginosa GanoEB1, followed by B. cepacia GanoEB2 (31-59%) and P. syringae GanoEB3 (30-31%). Among these three endophytic bacteria, P. aeruginosa GanoEB1 was the most effective in controlling Ganoderma disease and the dead seedlings were in the range of 13.3-26.7%, followed by B. cepacia GanoEB2 (33.3% for both trials) and P. syringae GanoEB3 (33.3-40.0%) compared to untreated seedlings at 60% for both trials. A field study needs to be conducted to verify their effectiveness in controlling Ganoderma in oil palm.
    Matched MeSH terms: Pseudomonas aeruginosa; Pseudomonas syringae
  5. Fulltext Twitching motility of Stenotrophomonas maltophilia under iron limitation: In-silico, phenotypic and proteomic approaches
    V K, Neela VK
    Virulence, 2020 Dec;11(1):104-112.
    PMID: 31957553 DOI: 10.1080/21505594.2020.1713649
    This study investigates the twitching ability of 28 clinical and five environmental strains of S. maltophilia grown under iron-depleted condition through in-silico, phenotypic and proteomics approaches. Rapid Annotations using Subsystem Technology (RAST) analysis revealed the presence of 21 targets of type IV pilus shared across S. maltophilia strains K279a, R551-3, D457 and JV3. The macroscopic twitching assay showed that only clinical isolates produced a zone of twitching with a mean of 22.00 mm under normal and 25.00 mm under iron-depleted conditions. (p = 0.002). Environmental isolates did not show any significant twitching activity in both conditions tested. Isobaric Tags for Relative and Absolute Quantification (ITRAQ) analysis showed altered expression of twitching motility protein PilT (99.08-fold change), flagellar biosynthesis protein FliC (20.14-fold change), and fimbrial protein (0.70-fold change) in response to iron-depleted condition. Most of the strains that have the ability to twitch under the normal condition, exhibit enhanced twitching during iron limitation.
    Matched MeSH terms: Pseudomonas aeruginosa/metabolism
  6. Chemical compositions and antibacterial activity of the leaf and stem oils of Piper porphyrophyllum (Lindl.) N.E. Br
    Salleh WM, Ahmad F, Sirat HM, Yen KH
    EXCLI J, 2012;11:399-406.
    PMID: 27418915
    The essential oils obtained by hydrodistillation from the fresh leaf and stem of Piper porphyrophyllum N.E. Br. were analyzed by GC and GC/MS. Thirty four constituents were identified in the leaf oil, while thirty eight constituents were identified in the stems oil. The most abundant components in the leaf oil included bicyclogermacrene (14.7 %), α-copaene (13.2 %) and β-phellandrene (9.5 %) while sabinene (15.5 %), bicyclogermacrene (12.3 %) and α-copaene (8.1 %) were the main constituents in the stem oil. The evaluation of antibacterial activity by using micro-dilution method revealed that both oils were moderately active against all the Gram-positive bacteria (Staphylococcus aureus, Bacillus subtilis) and Gram-negative bacteria (Pseudomonas aeruginosa, Pseudomonas putida and Escherichia coli) with minimum inhibitory concentration (MIC) values in the range 125-1000 µg/ml.
    Matched MeSH terms: Pseudomonas aeruginosa; Pseudomonas putida
  7. In-vitro susceptibility of Pseudomonas pseudomallei isolated in Malaysia to some new cephalosporins and a quinolone
    Cheong YM, Joseph PG, Koay AS
    Southeast Asian J Trop Med Public Health, 1987 Mar;18(1):94-6.
    PMID: 3477872
    The current drugs recommended for treatment of melioidosis are tetracycline, chloramphenicol and cotrimoxazole. Unfortunately these drugs are not the drug of choice in an acutely ill patient with septicaemia prior to the availability of laboratory results. With the discovery of the new cephalosporins which have a broad spectrum of activity clinicians are using them either alone or in combination with other antibiotics in such critical situations. Hence, an in-vitro study was carried out on the susceptibility of 41 strains of P. pseudomallei isolated in Malaysia, to these new cephalosporins and a new quinolone. The results showed that all the cephalosporins tested had some activity on the strains tested, with ceftazidime being the most active drug. Pefloxacin had very poor activity. However, further clinical studies are required to determine the duration, dosage and in-vivo activity of the antibiotics.
    Matched MeSH terms: Pseudomonas/drug effects*
  8. Comparative susceptibility studies of clinically isolated Pseudomonas aeruginosa, Escherichia coli and Klebsiella spp to cefoperazone and cefotaxime
    Lee YH, Hussain ZA, Choong FP
    J Hyg Epidemiol Microbiol Immunol, 1990;34(3):299-303.
    PMID: 2125616
    The in-vitro activity of cefotaxime and cefoperazone were compared using clinically isolated Escherichia coli, Klebsiella spp and Pseudomonas aeruginosa. Cefotaxime was found on a weight to weight basis, to be much more active than cefoperazone. All the three species studied show the presence of cefoperazone-resistant population which were sensitive to cefotaxime. The possible mechanisms of resistance to these antibiotics were discussed.
    Matched MeSH terms: Pseudomonas aeruginosa/drug effects*
  9. Resistance of Pseudomonas pseudomallei to normal human serum bactericidal action
    Ismail G, Razak N, Mohamed R, Embi N, Omar O
    Microbiol. Immunol., 1988;32(7):645-52.
    PMID: 3193910
    The effect of human normal serum (HNS) on Pseudomonas pseudomallei was determined. It is apparent from our data that the organism is resistant to the normal serum bactericidal mechanism. Ancillary experiments to confirm this serum-resistant property of P. pseudomallei were done by examining the effects of growth phase conditions of the bacteria (i.e., logarithmic and stationary phases) and different buffered systems used as diluent in our bactericidal assay. Results obtained showed similar degree of resistance to serum bactericidal killing by 5 strains of the organisms tested. The possible survival advantage of serum-resistance property to P. pseudomallei as bacterial pathogens known to invade the blood stream is discussed.
    Matched MeSH terms: Pseudomonas/immunology*
  10. A retrospective serological suvey of Royal Marines previously exposed to Pseudomonas pseudomallei in South East Asia
    Preston PJ, Lightfoot N, Clarke P
    Trans R Soc Trop Med Hyg, 1976;70(4):335-7.
    PMID: 1006764
    Following the suggestion that it was possible that cases of melioidosis amongst those who had been exposed abroad in the past, might be escaping notice, 487 Royal Marines were examined by indirect haemagglutination studies. Four hundred and eleven of these subjects had served for variable times in areas where melioidosis has been known to occur in Indonesia and Malaya, between 1960 and 1974, occupied in activities in the jungle and paddy fields during which exposure to the disease was to be expected. No evidence of residual subclinical melioidosis was found and it seems unlikely that recrudescent disease will prove to be a problem in the future for English servicemen who have been in South East Asia.
    Matched MeSH terms: Pseudomonas/immunology*
  11. A case of chronic melioidosis responding to tetracycline therapy
    Jegathesan M, Chye GH, Chik T, Singh RB
    Med J Malaya, 1972 Dec;27(2):150-2.
    PMID: 4268042
    Matched MeSH terms: Pseudomonas Infections/drug therapy
  12. Melioidosis in Malaysia. II. Distribution of Pseudomonas pseudomallei in soil and surface water
    Strauss JM, Groves MG, Mariappan M, Ellison DW
    Am J Trop Med Hyg, 1969 Sep;18(5):698-702.
    PMID: 5810797
    Matched MeSH terms: Pseudomonas/isolation & purification*
  13. Melioidosis in Malaysia. I. A method for isolation of Pseudomonas pseudomallei from soil and surface water
    Ellison DW, Baker HJ, Mariappan M
    Am J Trop Med Hyg, 1969 Sep;18(5):694-7.
    PMID: 5810796
    Matched MeSH terms: Pseudomonas/isolation & purification*
  14. Fulltext Impact of the Epithelial Lining Fluid Milieu on Amikacin Pharmacodynamics Against Pseudomonas aeruginosa
    Heffernan AJ, Sime FB, Lim SMS, Naicker S, Andrews KT, Ellwood D, et al.
    Drugs R D, 2021 Jun;21(2):203-215.
    PMID: 33797739 DOI: 10.1007/s40268-021-00344-5
    BACKGROUND: Even though nebulised administration of amikacin can achieve high epithelial lining fluid concentrations, this has not translated into improved patient outcomes in clinical trials. One possible reason is that the cellular and chemical composition of the epithelial lining fluid may inhibit amikacin-mediated bacterial killing.

    OBJECTIVE: The objective of this study was to identify whether the epithelial lining fluid components inhibit amikacin-mediated bacterial killing.

    METHODS: Two amikacin-susceptible (minimum inhibitory concentrations of 2 and 8 mg/L) Pseudomonas aeruginosa isolates were exposed in vitro to amikacin concentrations up to 976 mg/L in the presence of an acidic pH, mucin and/or surfactant as a means of simulating the epithelial lining fluid, the site of bacterial infection in pneumonia. Pharmacodynamic modelling was used to describe associations between amikacin concentrations, bacterial killing and emergence of resistance.

    RESULTS: In the presence of broth alone, there was rapid and extensive (> 6 - log10) bacterial killing, with emergence of resistance identified in amikacin concentrations < 976 mg/L. In contrast, the rate and extent of bacterial killing was reduced (≤ 5 - log10) when exposed to an acidic pH and mucin. Surfactant did not appreciably impact the bacterial killing or resistance emergence when compared with broth alone for either isolate. The combination of mucin and an acidic pH further reduced the rate of bacterial killing, with the maximal bacterial killing occurring 24 h following initial exposure compared with approximately 4-8 h for either mucin or an acidic pH alone.

    CONCLUSIONS: Our findings indicate that simulating the epithelial lining fluid antagonises amikacin-mediated killing of P. aeruginosa, even at the high concentrations achieved following nebulised administration.

    Matched MeSH terms: Pseudomonas aeruginosa*
  15. Antimicrobial resistance patterns and genotypic diversity between clinical and water systems isolates of Pseudomonas aeruginosa in Cali, Colombia
    Chávez M, Cabezas AF, Ferauds M, Castillo JE, Caicedo LD
    Trop Biomed, 2020 Sep 01;37(3):650-662.
    PMID: 33612779 DOI: 10.47665/tb.37.3.650
    Pseudomonas aeruginosa is considered an opportunistic pathogen, causing a wide variety of infections in compromised hosts, also frequently develops multi-resistance to antibiotics and can colonize various habitats, including water systems. The main aim of this study was to investigate antibiotics susceptibility pattern, genotypic diversity and detection of resistence genes in P. aeruginosa isolates from clinical and aquatic environment sources. Of the 220 P. aeruginosa isolates examined, 48 were clinical isolates and 172 isolates from wastewater and freshwater. Susceptibility to eight antimicrobial agents was carried out by disk diffusion method. Clinical and environmental isolates were screened for the presence of the genes encoding blaKPC-2, blaCTX-M-9, blaPER-1, blaOXA-10, blaIMP-1, blaVIM-2 and blaampC by polymerase chain reaction (PCR). Isolates were examined with PCR-SSCP analysis of partial DNAr 16S sequence. Isolates were mainly resistant to cefoxitin. Multidrug-resistant P. aeruginosa (MDRPA) strains were found in 70% and 90.3% of the clinical and environmental isolates, respectively. The prevalence rates of â-lactamase genes were recorded (blaKPC-2 41.3%, blaVIM-2 36.8%, blaIMP-1 13.6%, blaCTX-M-9 10.9% and blaampC 10.5%,). The PCR-SSCP analysis showed three conformational patterns. All clinical isolates and most environmental isolates were grouped into a single cluster. In this study, we found that P. aeruginosa strains recovered from city water systems must be considered potential reservoir for ESBL genes, especially blaKPC-2 and blaVIM-2.
    Matched MeSH terms: Pseudomonas aeruginosa; Pseudomonas Infections
  16. An electrochemical sensor based on gold nanoparticles-functionalized reduced graphene oxide screen printed electrode for the detection of pyocyanin biomarker in Pseudomonas aeruginosa infection
    Rashid JIA, Kannan V, Ahmad MH, Mon AA, Taufik S, Miskon A, et al.
    Mater Sci Eng C Mater Biol Appl, 2021 Jan;120:111625.
    PMID: 33545813 DOI: 10.1016/j.msec.2020.111625
    Multidrug resistant Pseudomonas aeruginosa (P. aeruginosa) is known to be a problematic bacterium for being a major cause of opportunistic and nosocomial infections. In this study, reduced graphene oxide decorated with gold nanoparticles (AuNPs/rGO) was utilized as a new sensing material for a fast and direct electrochemical detection of pyocyanin as a biomarker of P. aeruginosa infections. Under optimal condition, the developed electrochemical pyocyanin sensor exhibited a good linear range for the determination of pyocyanin in phosphate-buffered saline (PBS), human saliva and urine at a clinically relevant concentration range of 1-100 μM, achieving a detection limit of 0.27 μM, 1.34 μM, and 2.3 μM, respectively. Our developed sensor demonstrated good selectivity towards pyocyanin in the presence of interfering molecule such as ascorbic acid, uric acid, NADH, glucose, and acetylsalicylic acid, which are commonly found in human fluids. Furthermore, the developed sensor was able to discriminate the signal with and without the presence of pyocyanin directly in P. aeruginosa culture. This proposed technique demonstrates its potential application in monitoring the presence of P. aeruginosa infection in patients.
    Matched MeSH terms: Pseudomonas Infections*
  17. Swietenia macrophylla extract promotes the ability of Caenorhabditis elegans to survive Pseudomonas aeruginosa infection
    Dharmalingam K, Tan BK, Mahmud MZ, Sedek SA, Majid MI, Kuah MK, et al.
    J Ethnopharmacol, 2012 Jan 31;139(2):657-63.
    PMID: 22193176 DOI: 10.1016/j.jep.2011.12.016
    Swietenia macrophylla or commonly known as big leaf mahogany, has been traditionally used as an antibacterial and antifungal agent.
    Matched MeSH terms: Pseudomonas aeruginosa/drug effects*; Pseudomonas aeruginosa/immunology; Pseudomonas aeruginosa/pathogenicity; Pseudomonas Infections/drug therapy*; Pseudomonas Infections/immunology; Pseudomonas Infections/microbiology
  18. Fulltext Structure prediction, molecular dynamics simulation and docking studies of D-specific dehalogenase from Rhizobium sp. RC1
    Sudi IY, Wong EL, Joyce-Tan KH, Shamsir MS, Jamaluddin H, Huyop F
    Int J Mol Sci, 2012;13(12):15724-54.
    PMID: 23443090 DOI: 10.3390/ijms131215724
    Currently, there is no three-dimensional structure of D-specific dehalogenase (DehD) in the protein database. We modeled DehD using ab initio technique, performed molecular dynamics (MD) simulation and docking of D-2-chloropropionate (D-2CP), D-2-bromopropionate (D-2BP), monochloroacetate (MCA), monobromoacetate (MBA), 2,2-dichloropropionate (2,2-DCP), d,l-2,3-dichloropropionate (d,l-2,3-DCP), and 3-chloropropionate (3-CP) into the DehD active site. The sequences of DehD and D-2-haloacid dehalogenase (HadD) from Pseudomonas putida AJ1 have 15% sequence similarity. The model had 80% of the amino acid residues in the most favored region when compared to the crystal structure of DehI from Pseudomonas putida PP3. Docking analysis revealed that Arg107, Arg134 and Tyr135 interacted with D-2CP, and Glu20 activated the water molecule for hydrolytic dehalogenation. Single residue substitutions at 25-30 °C showed that polar residues of DehD were stable when substituted with nonpolar residues and showed a decrease in activity within the same temperature range. The molecular dynamics simulation of DehD and its variants showed that in R134A variant, Arg107 interacted with D-2CP, while in Y135A, Gln221 and Arg231 interacted with D-2CP. It is our emphatic belief that the new model will be useful for the rational design of DehDs with enhanced potentials.
    Matched MeSH terms: Pseudomonas putida/enzymology
  19. Application of arbuscular mycorrhizal fungi with Pseudomonas aeruginosa UPMP3 reduces the development of Ganoderma basal stem rot disease in oil palm seedlings
    Sundram S, Meon S, Seman IA, Othman R
    Mycorrhiza, 2015 Jul;25(5):387-97.
    PMID: 25492807 DOI: 10.1007/s00572-014-0620-5
    The effect of arbuscular mycorrhizal fungi (AMF) in combination with endophytic bacteria (EB) in reducing development of basal stem rot (BSR) disease in oil palm (Elaeis guineensis) was investigated. BSR caused by Ganoderma boninense leads to devastating economic loss and the oil palm industry is struggling to control the disease. The application of two AMF with two EB as biocontrol agents was assessed in the nursery and subsequently, repeated in the field using bait seedlings. Seedlings pre-inoculated with a combination of Glomus intraradices UT126, Glomus clarum BR152B and Pseudomonas aeruginosa UPMP3 significantly reduced disease development measured as the area under disease progression curve (AUDPC) and the epidemic rate (R L) of disease in the nursery. A 20-month field trial using similar treatments evaluated disease development in bait seedlings based on the rotting area/advancement assessed in cross-sections of the seedling base. Data show that application of Glomus intraradices UT126 singly reduced disease development of BSR, but that combination of the two AMF with P. aeruginosa UPMP3 significantly improved biocontrol efficacy in both nursery and fields reducing BSR disease to 57 and 80%, respectively. The successful use of bait seedlings in the natural environment to study BSR development represents a promising alternative to nursery trial testing in the field with shorter temporal assessment.
    Matched MeSH terms: Pseudomonas aeruginosa*
  20. Fulltext Structural adaptation of cold-active RTX lipase from Pseudomonas sp. strain AMS8 revealed via homology and molecular dynamics simulation approaches
    Mohamad Ali MS, Mohd Fuzi SF, Ganasen M, Abdul Rahman RN, Basri M, Salleh AB
    Biomed Res Int, 2013;2013:925373.
    PMID: 23738333 DOI: 10.1155/2013/925373
    The psychrophilic enzyme is an interesting subject to study due to its special ability to adapt to extreme temperatures, unlike typical enzymes. Utilizing computer-aided software, the predicted structure and function of the enzyme lipase AMS8 (LipAMS8) (isolated from the psychrophilic Pseudomonas sp., obtained from the Antarctic soil) are studied. The enzyme shows significant sequence similarities with lipases from Pseudomonas sp. MIS38 and Serratia marcescens. These similarities aid in the prediction of the 3D molecular structure of the enzyme. In this study, 12 ns MD simulation is performed at different temperatures for structural flexibility and stability analysis. The results show that the enzyme is most stable at 0°C and 5°C. In terms of stability and flexibility, the catalytic domain (N-terminus) maintained its stability more than the noncatalytic domain (C-terminus), but the non-catalytic domain showed higher flexibility than the catalytic domain. The analysis of the structure and function of LipAMS8 provides new insights into the structural adaptation of this protein at low temperatures. The information obtained could be a useful tool for low temperature industrial applications and molecular engineering purposes, in the near future.
    Matched MeSH terms: Pseudomonas/enzymology*
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