Displaying publications 21 - 40 of 103 in total

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  1. Ramlah Zainudin, Badrul Munir Mohd Zain, Shukor Mohd Nor, Norhayati Ahmad, Mustafa Abdul Rahman, Inger. RF
    Rakaman panggilan katak Borneo daripada genus Hylarana telah dijalankan di tujuh lokasi kajian di Sarawak, Malaysia. Sebanyak 12 individu daripada lima spesies katak Borneo telah berjaya dirakam dan dianalisis. Daripada 38 pembolehubah panggilan, hanya 27 daripadanya dapat menerangkan ciri-ciri panggilan daripada katak Hylarana Borneo. Saiz katak jantan mempengaruhi secara signifikan tenaga panggilan antara 90:50% amplitud puncak, tempoh nadi di antara 50%, nisbah tempoh panggilan untuk mencapai setengah modulasi frekuensi dan kadar ulangan not. Saiz katak Hylarana Borneo sedikit mempengaruhi frekuensi asas dan dominan panggilan. Di samping itu, taburan pembolehubah panggilan katak dan dendogram Euclid menyokong identiti taksonomi bagi setiap spesies katak Borneo Hylarana.
    Matched MeSH terms: Bivalvia
  2. Shuhaimi-Othman M, Ahmad A, Norziana G
    Kajian kepekatan logam dalam air di Tasik Bukit Merah telah dijalankan pada April 2009. Lima belas stesen persampelan telah dipilih dan sampel air permukaan bagi penentuan logam telah diambil. Beberapa parameter kualiti air seperti suhu, konduktiviti, oksigen terlarut, pH dan keliatan air telah ditentukan di setiap stesen. Sebanyak 11 jenis logam iaitu kadmium, zink, plumbum, kuprum, nikel, ferum, kobalt, aluminium, barium, kromium dan mangan (Mn) telah ditentukan dalam sampel air. Keputusan menunjukkan kepekatan semua logam kajian berada di bawah kepekatan maksimum yang dicadangkan oleh piawaian Malaysia dan antarabangsa bagi melindungi hidupan akuatik kecuali bagi logam Fe dan Al. Bagi parameter kualiti air, kajian menunjukkan semua parameter berada dalam julat kepekatan semula jadi (kelas I) berdasarkan Piawaian Kualiti Air Kebangsaan (NWQS Malaysia) kecuali oksigen terlarut dan pH di beberapa stesen persampelan terutama di bahagian timur tasik yang didapati dipengaruhi oleh faktor-faktor semula jadi dan antropogenik.
    Matched MeSH terms: Bivalvia
  3. Ismet Berber, Cumhur Avsar
    Sains Malaysiana, 2014;43:1835-1842.
    The presence of coliforms bacteria is one of the most prevalent problems in terms of public health in marine ecosystems over the world. In this study were investigated the physico-chemical properties of seawater and the numbers of total aerobic, total coliform, fecal coliform, E. coli O157:H7 and fecal streptococci in seawater and mussel samples collected from Sinop environs between May and October 2011. The microbiological analysis of seawater samples showed that the difference between total coliform, fecal coliform and fecal streptococci numbers (p<0.05) was significant for each station. However, the difference among total aerobic bacteria numbers for each stations (p>0.05) were not found significant. The difference between whole counting results for mussel samples taken from different sampling sites was not significant (p>0.05), too. Furthermore, the results of the screening assay for the presence of E. coli O157:H7 showed that the strain was not detected in neither seawater nor mussel samples. In conclusion, it was determined that fecal coliform and fecal streptococci counts in the seawater and mussel samples were higher than legal (Turkish Bathing Water and Quality of Fishery Products Regulation) limit values for some stations in Sinop coastal areas.
    Matched MeSH terms: Bivalvia
  4. Miklós Kázmér, Mohd Shafeea Leman & Kamal Roslan Mohamed, Che Aziz Ali, Danko Taboroši
    Sains Malaysiana, 2015;44:921-929.
    The purpose of this paper was to provide a practical guide assisting field workers in identification and interpretation of frequently occurring bioerosional textures created in limestone by intertidal organisms along the coasts of Langkawi Islands, Malaysia. The discussion follows the textural succession from the supratidal down to the lower intertidal zone. Traces left by lichens, boring sponges, molluscs (littorinid snails, the chiton Acanthopleura, the bivalve Lithophaga) and the echinoid Echinometra are illustrated. Products of bioconstructing organisms, specifically oysters and barnacle are also described. Ecological tolerance of each group is given.
    Matched MeSH terms: Bivalvia
  5. Sahibin Md. Rahim, Tukimat Lihan, Wan Mohd. Razi Idris, Chao LC
    Sains Malaysiana, 2006;35:23-30.
    Tumbuhan yang mempunyai kelimpahan tinggi dan boleh mengumpul logam berat dengan banyak boleh digunakan sebagai bio-penunjuk. Tujuan kajian ini adalah untuk melihat kesesuaian Melastoma malabathricum sebagai bio-penunjuk bagi pencemar logam berat dalam tanih bekas lombong. Dalam kajian ini, lima belas sampel Melastoma malabathricum dan tanih telah diambil di tapak bekas lombong besi dan timah Pelepah Kanan Kota Tinggi, Johor. Tiga bahagian tumbuhan (akar, batang, daun) telah dianalisis untuk mengkaji penyerapan kandungan logam berat Cu, Fe dan Mn. Parameter tanih yang dikaji meliputi parameter fizikal dan kimia. Hasil kajian taburan saiz partikel tanih menunjukkan kebanyakan tanih di kawasan kajian adalah jenis berpasir dan bertekstur pasir berlom. Kandungan bahan organik adalah sekitar 1.45 hingga 5.91%. Nilai pH bagi tanih di kawasan kajian adalah sekitar 3.55 hingga 5.68 iaitu bersifat sangat asid ke asid. Kekonduksian elektrik tanih adalah antara 2.14 hingga 2.58 mS/cm. Hasil kajian menunjukkan bahawa, kepekatan logam-logam berat dalam tanih ialah 12070 hingga 65545 mg/kg bagi Fe, 1070.3 hingga 11956.3 mg/kg bagi Mn dan 386.5 hingga 4753.2 mg/kg bagi Cu. Kandungan logam-logam berat dalam bahagian-bahagian tumbuhan pula adalah mengikut turutan seperti berikut; Fe>Mn>Cu. Didapati bahawa spesies tumbuhan Melastoma malabathricurn adalah sesuai sebagai penunjuk biologi logam berat Fe dan Mn.
    Matched MeSH terms: Bivalvia
  6. Tukimat Lihan, Sahibin Abdul Rahim, Aeslina Abdul Kadir, Jauharatuddini Ariffin, Suzana Ismail
    Sains Malaysiana, 2006;35:23-30.
    Sebanyak dua puluh lima sampel tanih atas (0-15 cm) telah diambil dari enam stesen persampelan di kawasan Pulau Indah, Klang, Selangor. Sampel ini telah dianalisis untuk menentukan kandungan logam berat, ciri fiziko-kimia dan nutrien di dalam tanih. Tanih telah dikutip dari stesen berasingan berdasarkan jenis tanih dan aktiviti pembangunan gunatanah yang berlainan. Didapati bahawa tanih di kawasan kajian didominasi oleh tekstur pasir kecuali di Stesen 1 dan 6 yang didominasi oleh tekstur lempung. Kandungan nutrien tersedia dipengaruhi oleh jenis tanih, dengan purata kandungan K dan Mg tinggi dalam tanih lempung manakala purata kandungan PO tinggi dalam tanih pasir. Kandungan nutrien terlarut pula dipengaruhi oleh aktiviti gunatanah, dengan kandungan NO-N dan NH-N terlarut adalah tinggi di kawasan pertanian manakala kandungan SO terlarut pula tinggi di kawasan terminal minyak dan kawasan industri logam. Ciri kimia dipengaruhi oleh jenis tanih di mana pH, kapasiti pertukaran kation dan kandungan bahan organik lebih tinggi di dalam tanih lempung berbanding tanih pasir. Kandungan logam berat dipengaruhi oleh jenis guna tanah, dengan kandungan Pb dan Zn tinggi di kawasan pertanian. Kandungan As dan Co pula adalah tinggi di kawasan terminal minyak dan industri logam. Kawasan gudang menunjukkan bacaan yang tertinggi bagi Ni dan Cr manakala kawasan Pelabuhan Sarat menunjukkan bacaan Cu yang tertinggi. Secara keseluruhannya, kepekatan kandungan Pb, Cu, Ni dan Co masih berada di bawah paras yang berpotensi toksik dalam tanih manakala sebahagian dari nilai As, Cr dan Zn melebihi paras yang berpotensi toksik dalam tanih.
    Matched MeSH terms: Bivalvia
  7. Sahibin A, Wanmohd Razi I., Zulfahmi A, Tukimat L, Akjalaludin A, Azman H, et al.
    Sains Malaysiana, 2013;42:289-299.
    Kajian ini telah dijalankan di kawasan tanih ultrabes di Felda Rokan Barat, Kuala Pilah, Negeri Sembilan. Sebanyak lima belas sampel tumbuhan dan substratnya telah diambil dari kawasan kajian dengan kaedah berkelompok. Tujuan kajian ini adalah untuk menentukan kandungan logam berat Fe, Ni, Cr, Mn, Co, Zn, Cu, Cd dan Pb di dalam tanih dan bahagian akar, batang dan daun tumbuhan. Koefisien penyerapan biologi (BAC) ditentukan secara perkiraan. Kandungan logam berat di dalam tumbuhan diekstrak secara penghadaman basah manakala kandungan di dalam tanih diekstrak dengan kaedah pengekstrakan berjujukan. Kandungan logam berat di dalam larutan ekstrak tanih dan tumbuhan ditentukan menggunakan spektrofotometer penyerapan atom kaedah nyalaan (FAAS). Hasil kajian menunjukkan kepekatan logam berat paling tinggi dalam substrat pokok daun kari Murraya koenigi adalah Fe, diikuti oleh Mn, Cr, Co, Ni, Zn, Cu, Cd dan Pb dengan purata kepekatan masing-masing sebanyak 1699.64 mg/kg, 532.59 mg/kg, 212.43 mg/kg, 195.02 mg/kg, 174.97 mg/kg, 48.11 mg/kg, 43.86 mg/kg, 3.65 mg/kg dan 0.48 mg/kg. Kepekatan logam berat tersedia bagi Mn dan Pb
    adalah lebih tinggi berbanding logam berat tersedia yang lain berdasarkan peratus. Kandungan Fe dan Mn adalah tinggi di dalam semua bahagian tumbuhan. Walau bagaimanapun, berdasarkan nilai purata kumulatif BAC, hanya logam Pb menunjukkan nilai penimbunan yang agak tinggi dalam tumbuhan. Kajian ini menunjukkan pokok daun kari (Murraya koenigi) bukan tumbuhan penumpuk logam berat berdasarkan kepada nilai BACnya yang rendah.
    Matched MeSH terms: Bivalvia
  8. Mohd. Suhaimi Ahmad, Muhammad Ridwan Fahmi, Mustaqqim Abdul Rahim, Naimah Ibrahim
    Sains Malaysiana, 2016;45:1857-1867.
    Suatu kajian untuk menilai kesan gabungan aktiviti guna tanah dan perubahan musim terhadap kualiti sumber air telah dijalankan di Terusan Utara, Kedah. Kajian ini dijalankan di lima stesen terpilih selama 12 bulan berdasarkan Indeks Kualiti Air (WQI) dan Piawaian Interim Kualiti Air Kebangsaan (INWQS). Kajian mendapati kualiti air di Terusan Utara berada pada Kelas III dan berlaku peningkatan kualiti air dari hulu ke hilir. Hampir semua stesen berpotensi sebagai punca pencemaran berdasarkan aktiviti guna tanah terutamanya di Pelubang, Jitra serta Tunjang. Kajian menunjukkan terdapat perbezaan yang signifikan ketika perubahan musim pada DO, TSS serta BOD, namun tidak pada ammonia, pH dan COD. Secara amnya, kombinasi aktiviti guna tanah dan perubahan musim boleh mempengaruhi atau memberi kesan terhadap kualiti sumber air. Oleh itu, tindakan segera perlu dilakukan untuk mengawal punca pencemaran bagi memastikan kualiti sumber air di Terusan Utara kekal terpelihara.
    Matched MeSH terms: Bivalvia
  9. Mohamad Hanif Kamal Roslan, Che Aziz Ali, Mohd Shafeea Leman, Kamal Roslan Mohamed
    Sains Malaysiana, 2017;46:2359-2365.
    Formasi Singa yang tersingkap di Kepulauan Langkawi terdiri daripada jujukan batuan sedimen argilit dan boleh dibahagikan kepada empat ahli iaitu Rebak, Kentut, Ular dan Selang. Formasi Singa kaya dengan fosil terutamanya daripada jenis brakiopod, bryozoa dan bivalvia yang boleh ditemui dalam Ahli Rebak dan Ahli Selang. Fosil yang ditemui semasa kajian dijalankan serta fosil yang pernah dilaporkan oleh penyelidik terdahulu telah dibuat penelitian semula untuk menentukan usia Formasi Singa dengan lebih tepat. Himpunan fosil Formasi Singa boleh dibahagikan kepada tiga julat usia, iaitu Visean, Asselian Akhir - Sakmarian Awal dan Sakmarian Akhir. Jujukan berusia Visean diwakili oleh Ahli Rebak, manakala jujukan Asselian Akhir - Sakmarian Awal dan jujukan Sakmarian Akhir diwakili oleh Ahli Selang. Dalam Ahli Ular dan Ahli Kentut tidak ditemui sebarang fosil. Keputusan daripada kertas ini memerlukan satu kajian semula dijalankan terhadap litostratigrafi Formasi Singa.
    Matched MeSH terms: Bivalvia
  10. Muhammad Ashahadi Dzulkafli, Mohd Shafeea Leman, Norasiah Sulaiman, Basir Jasin
    Sains Malaysiana, 2018;47:2259-2268.
    Fosil radiolaria berusia Perm Awal telah ditemui daripada batuan silika-rijang di Pos Blau, baratdaya Kelantan,
    Semenanjung Malaysia. Sebanyak empat puluh spesies radiolaria tergolong dalam lima belas genera dan tujuh famili
    telah dikenal pasti. Fauna radiolaria yang diperoleh termasuklah spesies penunjuk usia seperti Pseudoalbaillella
    lomentaria, Ps. sakmarensis, Ps. scalprata scalprata, Ps. scalprata postscalprata dan Ps. scalprata rhombothoracata.
    Kesemua radiolaria ini mewakili usia Perm awal merujuk kepada Zon Himpunan Pseudoalbaillella lomentaria
    (Sakmarian Awal) dan Zon Himpunan Pseudoalbaillella scalprata m. rhombothoracata (Sakmarian Akhir). Keputusan
    ini dapat menambah baik maklumat biostratigrafi radiolaria dan usia batuan bersilika-rijang di kawasan Pos Blau
    dan di dalam Zon Sutura Bentong-Raub.
    Matched MeSH terms: Bivalvia
  11. Beare D, McQuatters-Gollop A, van der Hammen T, Machiels M, Teoh SJ, Hall-Spencer JM
    PLoS One, 2013;8(5):e61175.
    PMID: 23658686 DOI: 10.1371/journal.pone.0061175
    Relationships between six calcifying plankton groups and pH are explored in a highly biologically productive and data-rich area of the central North Sea using time-series datasets. The long-term trends show that abundances of foraminiferans, coccolithophores, and echinoderm larvae have risen over the last few decades while the abundances of bivalves and pteropods have declined. Despite good coverage of pH data for the study area there is uncertainty over the quality of this historical dataset; pH appears to have been declining since the mid 1990s but there was no statistical connection between the abundance of the calcifying plankton and the pH trends. If there are any effects of pH on calcifying plankton in the North Sea they appear to be masked by the combined effects of other climatic (e.g. temperature), chemical (nutrient concentrations) and biotic (predation) drivers. Certain calcified plankton have proliferated in the central North Sea, and are tolerant of changes in pH that have occurred since the 1950s but bivalve larvae and pteropods have declined. An improved monitoring programme is required as ocean acidification may be occurring at a rate that will exceed the environmental niches of numerous planktonic taxa, testing their capacities for acclimation and genetic adaptation.
    Matched MeSH terms: Bivalvia/physiology*
  12. Neo ML, Erftemeijer PL, van Beek JK, van Maren DS, Teo SL, Todd PA
    PLoS One, 2013;8(3):e58819.
    PMID: 23555597 DOI: 10.1371/journal.pone.0058819
    Recruitment constraints on Singapore's dwindling fluted giant clam, Tridacna squamosa, population were studied by modelling fertilisation, larval transport, and settlement using real-time hydrodynamic forcing combined with knowledge of spawning characteristics, larval development, behaviour, and settlement cues. Larval transport was simulated using a finite-volume advection-diffusion model coupled to a three-dimensional hydrodynamic model. Three recruitment constraint hypotheses were tested: 1) there is limited connectivity between Singapore's reefs and other reefs in the region, 2) there is limited exchange within Singapore's Southern Islands, and 3) there exist low-density constraints to fertilisation efficacy (component Allee effects). Results showed that connectivity among giant clam populations was primarily determined by residual hydrodynamic flows and spawning time, with greatest chances of successful settlement occurring when spawning and subsequent larval dispersal coincided with the period of lowest residual flow. Simulations suggested poor larval transport from reefs located along the Peninsular Malaysia to Singapore, probably due to strong surface currents between the Andaman Sea and South China Sea combined with a major land barrier disrupting larval movement among reefs. The model, however, predicted offshore coral reefs to the southeast of Singapore (Bintan and Batam) may represent a significant source of larvae. Larval exchange within Singapore's Southern Islands varied substantially depending on the locations of source and sink reefs as well as spawning time; but all simulations resulted in low settler densities (2.1-68.6 settled individuals per 10,000 m(2)). Poor fertilisation rates predicted by the model indicate that the low density and scattered distribution of the remaining T. squamosa in Singapore are likely to significantly inhibit any natural recovery of local stocks.
    Matched MeSH terms: Bivalvia*
  13. Nasution S, Nuraini
    Pak J Biol Sci, 2023 Apr;26(5):213-223.
    PMID: 37859553 DOI: 10.3923/pjbs.2023.213.223
    <b>Background and Objective:</b> Bamboo clam <i>Solen lamarckii</i> is one of the bivalve's species that have important economic value in Indonesian waters. Knowledge of the reproductive biology of a species is essential for proper and sustainable fisheries management. Monthly variations in the gonad maturity level of the clams from the coastal waters of Bengkalis Island Indonesia, were examined. <b>Materials and Methods:</b> Samples of the clam were collected monthly at the intertidal zone during low tide from May to September, 2020. A total of 239 specimens of which 116 females and 123 males were examined. Reproductive aspects observed in this study included sex ratio, gonadosomatic index, monthly gonadal maturity level and female fecundity. Mature female or near spawning phases were used for fecundity estimation. The sex ratios were analysed using a Chi-quadrat-Test, whereas to determine differences in fecundity between female individuals tested by Analysis of Variance. <b>Results:</b> Based on the gonadosomatic index (GSI) and histological observation of both sexes's gonads, it can be concluded that early spawning occurred in August and the peak seemed to take place during October-November. The sex ratios were analysed using a Chi-quadrat-Test which was not different from parity. Gonad maturation time between males and females indicates synchrony and no hermaphrodites were observed in the collection. Females shell length range of 75.5 to 89.3 mm produced 4.63×103-7.43×103 eggs ind-1 female (N = 10). Females with a shell length between 75.5 and 89.3 mm had varying fecundities, but analysis of variance showed no significant difference (Sig>0.05). <b>Conclusion:</b> Based on the gonadosomatic index (GSI) and histological analysis, <i>S. lamarckii</i> in Bengkalis waters spawned in August. Males and females showed spawning synchrony.
    Matched MeSH terms: Bivalvia*
  14. Abdul Rahim A, Idris MH, Kamal AH, Wong SK, Arshad A
    Pak J Biol Sci, 2012 Jul 01;15(13):629-34.
    PMID: 24218932
    The Condition Index (CI) is a method to measure overall health of fish and that has been applied to estimate the effect that different environmental factors have on clam meat quality. The CI of local mangrove clam Polymesoda expansa in Kelulit, Miri Sarawak was determined from October 2010 to November 2011. Condition index that is generally used to characterize the physiological activity of organisms, varied from 1.8% in December 2010 to 3.4% in October 2011, with low values observed during the spawning period. The clam attained their best condition in quality of flesh weight during July-October. In present study, the CI showed a clear relationship with the reproductive cycle of P. expansa. However, no significant correlation (p > 0.05) was found between CI and the different physicochemical parameter of seawater. The data presented is necessary for developing sustainable management strategies and broodstock selection for the species which is crucial in aquaculture development.
    Matched MeSH terms: Bivalvia/physiology*
  15. Kamaruzzaman BY, Zahir MS, John BA, Waznah AS, Jalal KC, Shahbudin S, et al.
    Pak J Biol Sci, 2010 Dec 15;13(24):1208-13.
    PMID: 21313902
    An effort to analyze selected heavy metal accumulation by the razor clam (Solen brevis) from Tanjung Lumpur was conducted on January to April 2010. A total of fifty individuals of Razor clam Solen brevis were sampled and metals such as Iron (Fe), Zinc (Zn), Copper (Cu), Manganese (Mn), Lead (Pb) and Cadmium (Cd) Concentrations were determined using Inductively Coupled Plasma Mass Spectrometry (ICP-MS). Among the metals Fe occurred in elevated concentration in the soft tissue of razor clam followed by Zn. Cd was found to be in least concentration in the sample. Mean concentration of Fe, Zn, Mn, Cu, Cd and Pb in the soft tissue were 415.2 +/- 56.52, 87.74 +/- 11.85, 18.71 +/- 2.10, 8.64 +/- 1.75, 0.67 +/- 0.29 and 1.61 +/- 0.45 microg g(-1) dw, respectively indicating that the bioaccumulation of essential metals in the soft tissue was greater than the non essential heavy metals. Metal accumulation in the soft tissue of razor clam followed Fe > Zn > Mn > Cu > Pb > Cd order in present study. The observed concentration of acute toxicity of metals in Solen brevis (Family: Solenidae) from Tanjung Lumpur Coastal waters was lower than the permissible limit recommended by National and international standards proved that this species could be utilized for human consumption.
    Matched MeSH terms: Bivalvia/chemistry*
  16. Costello C, Cao L, Gelcich S, Cisneros-Mata MÁ, Free CM, Froehlich HE, et al.
    Nature, 2020 12;588(7836):95-100.
    PMID: 32814903 DOI: 10.1038/s41586-020-2616-y
    Global food demand is rising, and serious questions remain about whether supply can increase sustainably1. Land-based expansion is possible but may exacerbate climate change and biodiversity loss, and compromise the delivery of other ecosystem services2-6. As food from the sea represents only 17% of the current production of edible meat, we ask how much food we can expect the ocean to sustainably produce by 2050. Here we examine the main food-producing sectors in the ocean-wild fisheries, finfish mariculture and bivalve mariculture-to estimate 'sustainable supply curves' that account for ecological, economic, regulatory and technological constraints. We overlay these supply curves with demand scenarios to estimate future seafood production. We find that under our estimated demand shifts and supply scenarios (which account for policy reform and technology improvements), edible food from the sea could increase by 21-44 million tonnes by 2050, a 36-74% increase compared to current yields. This represents 12-25% of the estimated increase in all meat needed to feed 9.8 billion people by 2050. Increases in all three sectors are likely, but are most pronounced for mariculture. Whether these production potentials are realized sustainably will depend on factors such as policy reforms, technological innovation and the extent of future shifts in demand.
    Matched MeSH terms: Bivalvia
  17. Lopes-Lima M, Bolotov IN, Do VT, Aldridge DC, Fonseca MM, Gan HM, et al.
    Mol Phylogenet Evol, 2018 10;127:98-118.
    PMID: 29729933 DOI: 10.1016/j.ympev.2018.04.041
    Two Unionida (freshwater mussel) families are present in the Northern Hemisphere; the Margaritiferidae, representing the most threatened of unionid families, and the Unionidae, which include several genera of unresolved taxonomic placement. The recent reassignment of the poorly studied Lamprotula rochechouartii from the Unionidae to the Margaritiferidae motivated a new search for other potential species of margaritiferids from members of Gibbosula and Lamprotula. Based on molecular and morphological analyses conducted on newly collected specimens from Vietnam, we here assign Gibbosula crassa to the Margaritiferidae. Additionally, we reanalyzed all diagnostic characteristics of the Margaritiferidae and examined museum specimens of Lamprotula and Gibbosula. As a result, two additional species are also moved to the Margaritiferidae, i.e. Gibbosula confragosa and Gibbosula polysticta. We performed a robust five marker phylogeny with all available margaritiferid species and discuss the taxonomy within the family. The present phylogeny reveals the division of Margaritiferidae into four ancient clades with distinct morphological, biogeographical and ecological characteristics that justify the division of the Margaritiferidae into two subfamilies (Gibbosulinae and Margaritiferinae) and four genera (Gibbosula, Cumberlandia, Margaritifera, and Pseudunio). The systematics of the Margaritiferidae family is re-defined as well as their distribution, potential origin and main biogeographic patterns.
    Matched MeSH terms: Bivalvia/classification*; Bivalvia/genetics
  18. Lopes-Lima M, Froufe E, Do VT, Ghamizi M, Mock KE, Kebapçı Ü, et al.
    Mol Phylogenet Evol, 2017 01;106:174-191.
    PMID: 27621130 DOI: 10.1016/j.ympev.2016.08.021
    Freshwater mussels of the order Unionida are key elements of freshwater habitats and are responsible for important ecological functions and services. Unfortunately, these bivalves are among the most threatened freshwater taxa in the world. However, conservation planning and management are hindered by taxonomic problems and a lack of detailed ecological data. This highlights the urgent need for advances in the areas of systematics and evolutionary relationships within the Unionida. This study presents the most comprehensive phylogeny to date of the larger Unionida family, i.e., the Unionidae. The phylogeny is based on a combined dataset of 1032bp (COI+28S) of 70 species in 46 genera, with 7 of this genera being sequenced for the first time. The resulting phylogeny divided the Unionidae into 6 supported subfamilies and 18 tribes, three of which are here named for the first time (i.e., Chamberlainiini nomen novum, Cristariini nomen novum and Lanceolariini nomen novum). Molecular analyses were complemented by investigations of selected morphological, anatomical and behavioral characters used in traditional phylogenetic studies. No single morphological, anatomical or behavioral character was diagnostic at the subfamily level and few were useful at the tribe level. However, within subfamilies, many tribes can be recognized based on a subset of these characters. The geographical distribution of each of the subfamilies and tribes is also presented. The present study provides important advances in the systematics of these extraordinary taxa with implications for future ecological and conservation studies.
    Matched MeSH terms: Bivalvia/classification*; Bivalvia/genetics
  19. Thai BT, Tan MH, Lee YP, Gan HM, Tran TT, Austin CM
    Mol Biol Rep, 2016 May;43(5):391-6.
    PMID: 26922181 DOI: 10.1007/s11033-016-3966-2
    The marine clam Lutraria rhynchaena is gaining popularity as an aquaculture species in Asia. Lutraria populations are present in the wild throughout Vietnam and several stocks have been established and translocated for breeding and aquaculture grow-out purposes. In this study, we demonstrate the feasibility of utilising Illumina next-generation sequencing technology to streamline the identification and genotyping of microsatellite loci from this clam species. Based on an initial partial genome scan, 48 microsatellite markers with similar melting temperatures were identified and characterised. The 12 most suitable polymorphic loci were then genotyped using 51 individuals from a population in Quang Ninh Province, North Vietnam. Genetic variation was low (mean number of alleles per locus = 2.6; mean expected heterozygosity = 0.41). Two loci showed significant deviation from Hardy-Weinberg equilibrium (HWE) and the presence of null alleles, but there was no evidence of linkage disequilibrium among loci. Three additional populations were screened (n = 7-36) to test the geographic utility of the 12 loci, which revealed 100 % successful genotyping in two populations from central Vietnam (Nha Trang). However, a second population from north Vietnam (Co To) could not be successfully genotyped and morphological evidence and mitochondrial variation suggests that this population represents a cryptic species of Lutraria. Comparisons of the Qang Ninh and Nha Trang populations, excluding the 2 loci out of HWE, revealed statistically significant allelic variation at 4 loci. We reported the first microsatellite loci set for the marine clam Lutraria rhynchaena and demonstrated its potential in differentiating clam populations. Additionally, a cryptic species population of Lutraria rhynchaena was identified during initial loci development, underscoring the overlooked diversity of marine clam species in Vietnam and the need to genetically characterise population representatives prior to microsatellite development. The rapid identification and validation of microsatellite loci using next-generation sequencing technology warrant its integration into future microsatellite loci development for key aquaculture species in Vietnam and more generally, aquaculture countries in the South East Asia region.
    Matched MeSH terms: Bivalvia/genetics*
  20. Gan HM, Gan HY, Tan MH, Penny SS, Willan RC, Austin CM
    PMID: 25648928 DOI: 10.3109/19401736.2015.1007355
    The complete mitochondrial genome of the commercially and ecologically important and internationally vulnerable giant clam Tridacna squamosa was recovered by genome skimming using the MiSeq platform. The T. squamosa mitogenome has 20,930 base pairs (62.35% A+T content) and is made up of 12 protein-coding genes, 2 ribosomal subunit genes, 24 transfer RNAs, and a 2594 bp non-coding AT-rich region. The mitogenome has a relatively large insertion in the atp6 gene. This is the first mitogenome to be sequenced from the genus Tridacna, and the family Tridacnidae and represents a new gene order.
    Matched MeSH terms: Bivalvia/classification*; Bivalvia/genetics*
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