Displaying publications 21 - 40 of 196 in total

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  1. Too CC, Keller A, Sickel W, Lee SM, Yule CM
    Front Microbiol, 2018;9:2859.
    PMID: 30564202 DOI: 10.3389/fmicb.2018.02859
    Tropical peat swamp forests sequester globally significant stores of carbon in deep layers of waterlogged, anoxic, acidic and nutrient-depleted peat. The roles of microbes in supporting these forests through the formation of peat, carbon sequestration and nutrient cycling are virtually unknown. This study investigated physicochemical peat properties and microbial diversity between three dominant tree species: Shorea uliginosa (Dipterocarpaceae), Koompassia malaccensis (legumes associated with nitrogen-fixing bacteria), Eleiodoxa conferta (palm) and depths (surface, 45 and 90 cm) using microbial 16S rRNA gene amplicon sequencing. Water pH, oxygen, nitrogen, phosphorus, total phenolic contents and C/N ratio differed significantly between depths, but not tree species. Depth also strongly influenced microbial diversity and composition, while both depth and tree species exhibited significant impact on the archaeal communities. Microbial diversity was highest at the surface, where fresh leaf litter accumulates, and nutrient supply is guaranteed. Nitrogen was the core parameter correlating to microbial communities, but the interactive effects from various environmental variables displayed significant correlation to relative abundance of major microbial groups. Proteobacteria was the dominant phylum and the most abundant genus, Rhodoplanes, might be involved in nitrogen fixation. The most abundant methanogens and methanotrophs affiliated, respectively, to families Methanomassiliicoccaceae and Methylocystaceae. Our results demonstrated diverse microbial communities and provide valuable insights on microbial ecology in these extreme ecosystems.
    Matched MeSH terms: Wetlands
  2. Too CC, Ong KS, Lee SM, Yule CM, Keller A
    Microbiol Resour Announc, 2018 Sep;7(12).
    PMID: 30533674 DOI: 10.1128/MRA.01083-18
    The bacterium Dyella sp. strain C9 was isolated from North Selangor Peat Swamp Forest, Malaysia, and studied using whole-genome sequencing. The putative genes involved in biogeochemical processes were annotated, and the genome sequence is publicly available in the NCBI database.
    Matched MeSH terms: Wetlands
  3. Too CC, Ong KS, Ankenbrand MJ, Lee SM, Yule CM, Keller A
    Genome Announc, 2018 Jun 21;6(25).
    PMID: 29930066 DOI: 10.1128/genomeA.00561-18
    We report the draft genome sequence of a bacterial isolate, Paraburkholderia sp. strain C35, which was isolated from a Malaysian tropical peat swamp forest. The putative genes for the biogeochemical processes were annotated and are publicly available in the online databases.
    Matched MeSH terms: Wetlands
  4. Too CC, Ong KS, Ankenbrand MJ, Lee SM, Yule CM, Keller A
    Genome Announc, 2018 Jun 21;6(25).
    PMID: 29930065 DOI: 10.1128/genomeA.00560-18
    We report here the draft genome of Klebsiella sp. strain C31, a bacterial isolate from the North Selangor peat swamp forest in Malaysia. The putative genes for the biogeochemical processes of the genome were annotated and investigated.
    Matched MeSH terms: Wetlands
  5. Too CC, Ong KS, Lee SM, Yule CM, Keller A
    Genome Announc, 2018 Jun 21;6(25).
    PMID: 29930031 DOI: 10.1128/genomeA.00459-18
    We report here the draft genome sequences of a bacterial isolate, Dyella sp. strain C11, which was isolated from a Malaysian tropical peat swamp forest. The putative genes for the biogeochemical processes were annotated, and the genome was deposited in an online database.
    Matched MeSH terms: Wetlands
  6. Teoh TP, Ong SA, Ho LN, Wong YS, Lutpi NA, Oon YL, et al.
    Environ Sci Pollut Res Int, 2023 Feb;30(7):17546-17563.
    PMID: 36197611 DOI: 10.1007/s11356-022-23101-w
    The treatment of single and binary azo dyes, as well as the effect of the circuit connection, aeration, and plant on the performance of UFCW-MFC, were explored in this study. The decolorization efficiency of Remazol Yellow FG (RY) (single dye: 98.2 %; binary dye: 92.3 %) was higher than Reactive Black 5 (RB5) (single: 92.3 %; binary: 86.7 %), which could be due to monoazo dye (RY) requiring fewer electrons to break the azo bond compared to the diazo dye (RB5). In contrast, the higher decolorization rate of RB5 in binary dye indicated the removal rate was affected by the electron-withdrawing groups in the dye structure. The closed circuit enhanced about 2% of color and 4% of COD removal. Aeration improved the COD removal by 6%, which could be contributed by the mineralization of intermediates. The toxicity of azo dyes was reduced by 11-26% and the degradation pathways were proposed. The dye removal by the plants was increased with a higher contact time. RB5 was more favorable to be uptook by the plant as RB5 holds a higher partial positive charge. 127.39 (RY), 125.82 (RB5), and 58.66 mW/m3 (binary) of maximum power density were generated. The lower power production in treating the binary dye could be due to more electrons being utilized for the degradation of higher dye concentration. Overall, the UFCW-MFC operated in a closed circuit, aerated, and planted conditions achieved the optimum performance in treating binary azo dyes containing wastewater (dye: 87-92%; COD: 91%) compared to the other conditions (dye: 83-92%; COD: 78-87%).
    Matched MeSH terms: Wetlands
  7. Teoh TP, Ong SA, Ho LN, Wong YS, Lutpi NA, Tan SM, et al.
    Environ Sci Pollut Res Int, 2023 Jul;30(35):84397-84411.
    PMID: 37358771 DOI: 10.1007/s11356-023-28362-7
    The enhancement of up-flow constructed wetland-microbial fuel cell (UFCW-MFC) performance in energy retrieval from caffeine containing wastewater has been explored via various operating conditions (hydraulic retention time (HRT), multianode (MA), multicathode current collector (MC), external resistance). The anaerobic decaffeination and COD removal improved by 37 and 12% as the HRT extended from 1 to 5 d. The increment in contact time between the microbes and organic substrates promoted the degradation and contributed to higher power output (3.4-fold), CE (eightfold), and NER (14-16-fold). The MA and MC connections facilitated the electron transfer rate and the degradation rate of organic substrates in the multiple anodic zones, which enhanced the removal efficiency in the anaerobic compartment (Caffeine: 4.2%; COD: 7.4%) and led to higher electricity generation (Power: 4.7-fold) and energy recovery (CE: 1.4-fold; NER: 2.3-2.5-fold) compared to SA. The lower external resistance favored the growth of electrogens and induced higher electron flux, where the best treatment performance and electricity production was obtained when the external resistance approached the internal resistance. Overall, it was noteworthy that the optimum operating conditions were achieved with 5 d HRT, MA, and MC connection along with external resistance of 200 Ω, which significantly outperformed the initial conditions (1 d HRT, SA connection, and 1000 Ω) by 43.7 and 29.8% of caffeine and COD removal in the anaerobic compartment, respectively as well as 14-fold of power generation.
    Matched MeSH terms: Wetlands
  8. Tee HC, Lim PE, Seng CE, Mohd Nawi MA, Adnan R
    J Environ Manage, 2015 Jan 1;147:349-55.
    PMID: 25284799 DOI: 10.1016/j.jenvman.2014.09.025
    Horizontal subsurface-flow (HSF) constructed wetland incorporating baffles was developed to facilitate upflow and downflow conditions so that the treatment of pollutants could be achieved under multiple aerobic, anoxic and anaerobic conditions sequentially in the same wetland bed. The performances of the baffled and conventional HSF constructed wetlands, planted and unplanted, in the removal of azo dye Acid Orange 7 (AO7) were compared at the hydraulic retention times (HRT) of 5, 3 and 2 days when treating domestic wastewater spiked with AO7 concentration of 300 mg/L. The planted baffled unit was found to achieve 100%, 83% and 69% AO7 removal against 73%, 46% and 30% for the conventional unit at HRT of 5, 3 and 2 days, respectively. Longer flow path provided by baffled wetland units allowed more contact of the wastewater with the rhizomes, microbes and micro-aerobic zones resulting in relatively higher oxidation reduction potential (ORP) and enhanced performance as kinetic studies revealed faster AO7 biodegradation rate under aerobic condition. In addition, complete mineralization of AO7 was achieved in planted baffled wetland unit due to the availability of a combination of aerobic, anoxic and anaerobic conditions.
    Matched MeSH terms: Wetlands*
  9. Tee HC, Lim PE, Seng CE, Nawi MA
    Bioresour Technol, 2012 Jan;104:235-42.
    PMID: 22130081 DOI: 10.1016/j.biortech.2011.11.032
    The objectives of this study are to compare the performance of newly developed baffled and conventional horizontal subsurface-flow (HSF) constructed wetlands in the removal of nitrogen at the hydraulic retention times (HRT) of 2, 3 and 5 days and to evaluate the potential of rice husk as wetland media for wastewater treatment. The results show that the planted baffled unit achieved 74%, 84% and 99% ammonia nitrogen (NH(4)(+)-N) removal versus 55%, 70% and 96% for the conventional unit at HRT of 2, 3 and 5 days, respectively. The better performance of the baffled unit was explained by the longer pathway due to the up-flow and down-flow conditions sequentially thus allowing more contact of the wastewater with the rhizomes and micro-aerobic zones. Near complete total oxidized nitrogen was observed due to the use of rice husk as wetland media which provided the COD as the electron donor in the denitrification process.
    Matched MeSH terms: Wetlands*
  10. Tee HC, Seng CE, Noor AM, Lim PE
    Sci Total Environ, 2009 May 15;407(11):3563-71.
    PMID: 19272632 DOI: 10.1016/j.scitotenv.2009.02.017
    This study aims to compare the performance of planted and unplanted constructed wetlands with gravel- and raw rice husk-based media for phenol and nitrogen removal. Four laboratory-scale horizontal subsurface-flow constructed wetland units, two of which planted with cattail (Typha latifolia) were operated outdoors. The units were operated at a nominal hydraulic retention time of 7 days and fed with domestic wastewater spiked with phenol concentration at 300 mg/L for 74 days and then at 500 mg/L for 198 days. The results show that planted wetland units performed better than the unplanted ones in the removal and mineralization of phenol. This was explained by the creation of more micro-aerobic zones in the root zone of the wetland plants which allow a faster rate of phenol biodegradation, and the phenol uptake by plants. The better performance of the rice husk-based planted wetland compared to that of the gravel-based planted wetland in phenol removal could be explained by the observation that more rhizomes were established in the rice husk-based wetland unit thus creating more micro-aerobic zones for phenol degradation. The role of rice husk as an adsorbent in phenol removal was considered not of importance.
    Matched MeSH terms: Wetlands*
  11. Tangahu BV, Sheikh Abdullah SR, Basri H, Idris M, Anuar N, Mukhlisin M
    Chemosphere, 2022 Mar;291(Pt 3):132952.
    PMID: 34798103 DOI: 10.1016/j.chemosphere.2021.132952
    Lead (Pb) is one of the toxic heavy metals that pollute the environment as a result of industrial activities. This study aims to optimize Pb removal from water by using horizontal free surface flow constructed wetland (HFSFCW) planted with Scirpus grossus. Optimization was conducted using response surface methodology (RSM) under Box-Behnken design with the operational parameters of initial Pb concentration, retention time, and aeration. Optimization results showed that 37 mg/L of initial Pb concentration, 32 days of retention time, and no aeration were the optimum conditions for Pb removal by using the systems. Validation test was run under two different conditions, namely, non-bioaugmented and bioaugmented with rhizobacteria (Bacillus cereus, B. pumilus, B. subtilis, Brevibacillus choshinensis, and Rhodococcus rhodochrous). Results of the validation test showed that Pb removal in water achieved 99.99% efficiency with 0.2% error from the RSM prediction, while the adsorption of Pb by plants reached 5160.18 mg/kg with 10.6% error from the RSM prediction. The bioaugmentation of the five rhizobacterial species showed a slight improvement in Pb removal from water and Pb adsorption by plants. However, no significant improvement was achieved (p 
    Matched MeSH terms: Wetlands
  12. Tang ACI, Melling L, Stoy PC, Musin KK, Aeries EB, Waili JW, et al.
    Glob Chang Biol, 2020 Dec;26(12):6931-6944.
    PMID: 32881141 DOI: 10.1111/gcb.15332
    Tropical peat forests are a globally important reservoir of carbon, but little is known about CO2 exchange on an annual basis. We measured CO2 exchange between the atmosphere and tropical peat swamp forest in Sarawak, Malaysia using the eddy covariance technique over 4 years from 2011 to 2014. The CO2 fluxes varied between seasons and years. A small carbon uptake took place during the rainy season at the beginning of 2011, while a substantial net efflux of >600 g C/m2 occurred over a 2 month period in the middle of the dry season. Conversely, the peat ecosystem was a source of carbon during both the dry and rainy seasons in subsequent years and more carbon was lost during the rainy season relative to the dry season. Our results demonstrate that the forest was a net source of CO2 to the atmosphere during every year of measurement with annual efflux ranging from 183 to 632 g C m-2  year-1 , noting that annual flux values were sensitive to gap filling methodology. This is in contrast to the typical view of tropical peat forests which must have acted as net C sinks over time scales of centuries to millennia to create the peat deposits. Path analyses revealed that the gross primary productivity (GPP) and ecosystem respiration (RE) were primarily affected by vapour pressure deficit (VPD). Results suggest that future increases in VPD could further reduce the C sink strength and result in additional net CO2 losses from this tropical peat swamp forest in the absence of plant acclimation to such changes in atmospheric dryness.
    Matched MeSH terms: Wetlands
  13. Tang ACI, Stoy PC, Hirata R, Musin KK, Aeries EB, Wenceslaus J, et al.
    Sci Total Environ, 2019 Sep 15;683:166-174.
    PMID: 31132697 DOI: 10.1016/j.scitotenv.2019.05.217
    Tropical rainforests control the exchange of water and energy between the land surface and the atmosphere near the equator and thus play an important role in the global climate system. Measurements of latent (LE) and sensible heat exchange (H) have not been synthesized across global tropical rainforests to date, which can help place observations from individual tropical forests in a global context. We measured LE and H for four years in a tropical peat forest ecosystem in Sarawak, Malaysian Borneo using eddy covariance, and hypothesize that the study ecosystem will exhibit less seasonal variability in turbulent fluxes than other tropical ecosystems as soil water is not expected to be limiting in a tropical forested wetland. LE and H show little variability across seasons in the study ecosystem, with LE values on the order of 11 MJ m-2 day and H on the order of 3 MJ m-2 day-1. Annual evapotranspiration (ET) did not differ among years and averaged 1579 ± 47 mm year-1. LE exceeded characteristic values from other tropical rainforest ecosystems in the FLUXNET2015 database with the exception of GF-Guy near coastal French Guyana, which averaged 8-11 MJ m-2 day-1. The Bowen ratio (Bo) in tropical rainforests in the FLUXNET2015 database either exhibited little seasonal trend, one seasonal peak, or two peaks. Volumetric water content (VWC) and VPD explained a trivial amount of the variability of LE and Bo in some of the tropical rainforests including the study ecosystem, but were strong controls in others, suggesting differences in stomatal regulation and/or the partitioning between evaporation and transpiration. Results demonstrate important differences in the seasonal patterns in water and energy exchange across different tropical rainforest ecosystems that need to be understood to quantify how ongoing changes in tropical rainforest extent will impact the global climate system.
    Matched MeSH terms: Wetlands
  14. Tan LT, Chan KG, Pusparajah P, Yin WF, Khan TM, Lee LH, et al.
    BMC Microbiol, 2019 02 13;19(1):38.
    PMID: 30760201 DOI: 10.1186/s12866-019-1409-7
    BACKGROUND: Colon cancer is the third most commonly diagnosed cancer worldwide, with a commensurately high mortality rate. The search for novel antioxidants and specific anticancer agents which may inhibit, delay or reverse the development of colon cancer is thus an area of great interest; Streptomyces bacteria have been demonstrated to be a source of such agents.

    RESULTS: The extract from Streptomyces sp. MUM265- a strain which was isolated and identified from Kuala Selangor mangrove forest, Selangor, Malaysia- was analyzed and found to exhibit antioxidant properties as demonstrated via metal-chelating ability as well as superoxide anion, DPPH and ABTS radical scavenging activities. This study also showed that MUM265 extract demonstrated cytotoxicity against colon cancer cells as evidenced by the reduced cell viability of Caco-2 cell line. Treatment with MUM265 extract induced depolarization of mitochondrial membrane potential and accumulation of subG1 cells in cell cycle analysis, suggesting that MUM265 exerted apoptosis-inducing effects on Caco-2 cells.

    CONCLUSION: These findings indicate that mangrove derived Streptomyces sp. MUM265 represents a valuable bioresource of bioactive compounds for the future development of chemopreventive agents, with particular promise suggested for treatment of colon cancer.

    Matched MeSH terms: Wetlands*
  15. Tan LT, Chan KG, Chan CK, Khan TM, Lee LH, Goh BH
    Biomed Res Int, 2018;2018:4823126.
    PMID: 29805975 DOI: 10.1155/2018/4823126
    Mangrove derived microorganisms constitute a rich bioresource for bioprospecting of bioactive natural products. This study explored the antioxidant potentials of Streptomyces bacteria derived from mangrove soil. Based on 16S rRNA phylogenetic analysis, strain MUM292 was identified as the genus Streptomyces. Strain MUM292 showed the highest 16S rRNA gene sequence similarity of 99.54% with S. griseoruber NBRC12873T. Furthermore, strain MUM292 was also characterized and showed phenotypic characteristics consistent with Streptomyces bacteria. Fermentation and extraction were performed to obtain the MUM292 extract containing the secondary metabolites of strain MUM292. The extract displayed promising antioxidant activities, including DPPH, ABTS, and superoxide radical scavenging and also metal-chelating activities. The process of lipid peroxidation in lipid-rich product was also retarded by MUM292 extract and resulted in reduced MDA production. The potential bioactive constituents of MUM292 extract were investigated using GC-MS and preliminary detection showed the presence of pyrazine, pyrrole, cyclic dipeptides, and phenolic compound in MUM292 extract. This work demonstrates that Streptomyces MUM292 can be a potential antioxidant resource for food and pharmaceutical industries.
    Matched MeSH terms: Wetlands
  16. Tam CY, Zong Y, Xiong H, Zheng Z
    Data Brief, 2018 Dec;21:1886-1889.
    PMID: 30519612 DOI: 10.1016/j.dib.2018.10.156
    The data presented here are related to the research paper entitled "A below-the-present late Holocene relative sea level and the glacial isostatic adjustment during the Holocene in the Malay Peninsula" (Tam et al., 2018) [1]. The diatoms and pollen data are collected from surface sediments of the Merang wetlands, Kuala Terengganu, Malaysia, and are presented as percentages of total diatoms or total land pollen respectively. Ground elevations of the sampling sites are levelled to the national datum and expressed as elevations above or below mean sea level. These diatom and pollen data can be used for indicative meaning calibration of sea-level index points and for the development of diatom-based or pollen-based tidal level transfer functions. These data have been used for calibrating the indicative meanings for sea-level index points in the reconstruction of Holocene sea-level history of the Peninsular Malaysia.
    Matched MeSH terms: Wetlands
  17. Takafumi H, Kamii T, Murai T, Yoshida R, Sato A, Tachiki Y, et al.
    PeerJ, 2017;5:e3869.
    PMID: 29038752 DOI: 10.7717/peerj.3869
    The sika deer (Cervus nippon yesoensis) population in the Ramsar-listed Kushiro Wetland has increased in recent years, and the Ministry of the Environment of Japan has decided to take measures to reduce the impact of deer on the ecosystem. However, seasonal movement patterns of the deer (i.e., when and where the deer inhabit the wetland) remain unclear. We examined the seasonal movement patterns of sika deer in the Kushiro Wetland from 2013 to 2015 by analyzing GPS location data for 28 hinds captured at three sites in the wetland. Seasonal movement patterns were quantitatively classified as seasonal migration, mixed, dispersal, nomadic, resident, or atypical, and the degree of wetland utilization for each individual was estimated. The area of overlap for each individual among intra-capture sites and inter-capture sites was calculated for the entire year and for each season. Our results showed that the movement patterns of these deer were classified not only as resident but also as seasonal migration, dispersal, and atypical. Approximately one-third of the individuals moved into and out of the wetland during the year as either seasonal migrants or individuals with atypical movement. Some of the individuals migrated to farmland areas outside the wetland (the farthest being 69.9 km away). Half of the individuals inhabited the wetland all or most of the year, i.e., 81-100% of their annual home range was within the wetland area. Even among individuals captured at the same site, different seasonal movement patterns were identified. The overlap areas of the home ranges of individuals from the same capture sites were larger than those for individuals from different capture sites (e.g., mean of annual home range overlap with intra-capture sites: 47.7% vs. inter-sites: 1.3%). To achieve more effective ecosystem management including deer management in the wetland, management plans should cover inside and outside of the wetland and separate the population into multiple management units to address the different movement patterns and wetland utilization of the population.
    Matched MeSH terms: Wetlands
  18. T Ismail TNS, A Kassim NF, A Rahman A, Yahya K, Webb CE
    Trop Med Infect Dis, 2018 Jul 23;3(3).
    PMID: 30274473 DOI: 10.3390/tropicalmed3030077
    Due to conservation and rehabilitation efforts, mangrove forests represent some of the largest environmental niches in Malaysia. However, there is little information on the potential risks posed by mosquitoes that are directly and indirectly associated with mangrove forests. To study the potential health risk to humans active within and in close vicinity of mangrove forests, this research focused on the day biting habits of mosquitoes in mangrove forests of Kedah, Malaysia. The bare leg catch (BLC) method was used to collect adult mosquitoes during a 12-h period from 7:30 a.m. to 7:30 p.m. in both disturbed and less disturbed areas of mangroves. In total, 795 adult mosquitoes from 5 genera and 8 species were collected, and over 65% of the total mosquitoes were collected from the less disturbed area. The predominant species from the less disturbed area was Verrallina butleri; in the disturbed area the dominant species was Culex sitiens. The peak biting hour differed for each species, with Aedes albopictus and Cx. sitiens recorded as having a bimodal biting activity peak during dawn and dusk. For Ve. butleri an erratic pattern of biting activity was recorded in the less disturbed area but it peaked during the early daytime for both collection points. Overall, the distinct pattern of day biting habits of mosquitoes within mangroves peaked during dawn and dusk for the less disturbed area but was irregular for the disturbed area throughout the day. The presence of vectors of pathogens such as Ae. albopictus for both areas raises the need for authorities to consider management of mosquitoes in mangrove forests.
    Matched MeSH terms: Wetlands
  19. Suratman S, Tahir NM, Latif MT
    Bull Environ Contam Toxicol, 2012 May;88(5):755-8.
    PMID: 22392007 DOI: 10.1007/s00128-012-0574-2
    The distribution of total petrogenic hydrocarbon was investigated in the subsurface water of Setiu Wetland from July to October 2008. The concentration was quantified by UV-fluorescence spectroscopy and ranged from 4 to 121 μg/L (mean 60 ± 41 μg/L). Higher total petrogenic hydrocarbon concentrations were found in area with high boating activities suggesting that the contribution is likely related to fossil fuel combustion. The present study also revealed that the total petrogenic hydrocarbon values are still lower that those reported in Malaysian coastal waters.
    Matched MeSH terms: Wetlands*
  20. Suratman S, Hussein A, Mohd Tahir N, Latif M, Mostapa R, Weston K
    Sains Malaysiana, 2016;45:551-558.
    This paper presents the results for surface water quality parameters measured in the Setiu Wetland, on the east coast of Malaysia, which feeds into the southern part of the South China Sea. There are no previous studies dealing with the seasonal and spatial variation of water quality in this area, despite numerous anthropogenic inputs into this ecologically and economically important wetland. The parameters measured were salinity, temperature, dissolved oxygen (DO), pH, biological oxygen demand (BOD) and total suspended solids (TSS). These parameters were sampled monthly from October 2009 to September 2010, during both the wet and dry seasons, at ten sampling stations distributed throughout the area. The physical water quality parameters were measured in situ whilst TSS and BOD were determined using the standard methods. A deterioration of water quality in the Setiu Wetland was observed in areas near agriculture and aquaculture activities. This was expected to be as a result of the use of fertilisers, waste from fish farm food and the waste products of aquaculture. The parameters measured showed lower mean values of surface salinity, temperature, DO, pH and TSS during the wet season relative to the dry season. In contrast, the concentration of BOD was high during the wet season and lowest in the dry season. Results obtained from this study clearly showed the surface physical water quality for the Setiu Wetland was highly influenced by anthropogenic activities and seasonal variation. Therefore, both factors must be considered to move towards proper management of this wetland.
    Matched MeSH terms: Wetlands
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