Displaying publications 81 - 100 of 103 in total

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  1. Tang, J.Y.H., Wan-Rosli, W.F., Abdul-Razak, N.H., Yeo, C.C., Abu Bakar, C.A., Son, R.
    MyJurnal
    This study aimed to investigate the prevalence and antibiogram of Vibrio parahaemolyticus in processed bivalve molluscs in Kuala Terengganu. A total of 80 seafood samples, namely mussels (n=20), carpet clams (n=20), cockles (n=20) and scallops (n=20), were subjected to PCR and conventional plating method for the detection of V. parahaemolyticus. V. parahaemolyticus was found in green mussels (55%), carpet clam (80%), cockles (40%) and scallops (55%). Fifty-five V. parahaemolyticus isolates were subjected to 9 types antibiotic sensitivity test using discs diffusion method. All isolates were susceptible to Tetracycline and Gentamycin. Isolates showed high resistance towards Vancomycin (52.73%), Penicillin (45.45%) and Amplicillin (32.73%). Resistance towards Amikacin, Ciprofloxacin and Norfloxacin were found to be 1.82%. It can be concluded that local bivalve molluscs were contaminated with V. parahaemolyticus and isolates showed resistance towards certain antibiotics. Therefore, consumption of raw or semi-cooked bivalve molluscs is not advisable.
    Matched MeSH terms: Bivalvia
  2. Thai BT, Tan MH, Lee YP, Gan HM, Tran TT, Austin CM
    Mol Biol Rep, 2016 May;43(5):391-6.
    PMID: 26922181 DOI: 10.1007/s11033-016-3966-2
    The marine clam Lutraria rhynchaena is gaining popularity as an aquaculture species in Asia. Lutraria populations are present in the wild throughout Vietnam and several stocks have been established and translocated for breeding and aquaculture grow-out purposes. In this study, we demonstrate the feasibility of utilising Illumina next-generation sequencing technology to streamline the identification and genotyping of microsatellite loci from this clam species. Based on an initial partial genome scan, 48 microsatellite markers with similar melting temperatures were identified and characterised. The 12 most suitable polymorphic loci were then genotyped using 51 individuals from a population in Quang Ninh Province, North Vietnam. Genetic variation was low (mean number of alleles per locus = 2.6; mean expected heterozygosity = 0.41). Two loci showed significant deviation from Hardy-Weinberg equilibrium (HWE) and the presence of null alleles, but there was no evidence of linkage disequilibrium among loci. Three additional populations were screened (n = 7-36) to test the geographic utility of the 12 loci, which revealed 100 % successful genotyping in two populations from central Vietnam (Nha Trang). However, a second population from north Vietnam (Co To) could not be successfully genotyped and morphological evidence and mitochondrial variation suggests that this population represents a cryptic species of Lutraria. Comparisons of the Qang Ninh and Nha Trang populations, excluding the 2 loci out of HWE, revealed statistically significant allelic variation at 4 loci. We reported the first microsatellite loci set for the marine clam Lutraria rhynchaena and demonstrated its potential in differentiating clam populations. Additionally, a cryptic species population of Lutraria rhynchaena was identified during initial loci development, underscoring the overlooked diversity of marine clam species in Vietnam and the need to genetically characterise population representatives prior to microsatellite development. The rapid identification and validation of microsatellite loci using next-generation sequencing technology warrant its integration into future microsatellite loci development for key aquaculture species in Vietnam and more generally, aquaculture countries in the South East Asia region.
    Matched MeSH terms: Bivalvia/genetics*
  3. Tsutsumi S, Yamaguchi Y, Nishida I, Akiyama K, Zakaria MP, Takada H
    Mar Pollut Bull, 2002;45(1-12):325-31.
    PMID: 12398403
    Alkylbenzenes, molecular markers of sewage, were measured in 34 green mussels collected from India, Indonesia, Malaysia, Thailand, Cambodia, Vietnam, and the Philippines together with blue mussels collected from Tokyo Bay, Japan. Linear alkylbenzene (LAB) concentrations in South and South East Asian countries ranged from 10 to 1,640 ng-sigmaLAB/g-dry tissue. In some populous cities, LAB concentrations were similar or higher than those found in northern Tokyo Bay which is heavily impacted by sewage effluents. I/E ratios (a ratio of internal to external isomers of LABs) in the South and South East Asian countries (1-3) were much lower than those in Tokyo Bay (3-8), indicating sewage discharged in the coastal zone is poorly treated (e.g., raw sewage and/or primary effluents). Alkylbenzenes with branched alkyl chains, tetrapropylene-based alkylbenzenes, were also detected in mussels from Indonesia and Philippines. This "tell-tale" sign indicates that poorly degradable detergents are still in use in this area, although they have long been phased-out in many industrialized countries.
    Matched MeSH terms: Bivalvia*
  4. Tukimat Lihan, Sahibin Abdul Rahim, Aeslina Abdul Kadir, Jauharatuddini Ariffin, Suzana Ismail
    Sains Malaysiana, 2006;35:23-30.
    Sebanyak dua puluh lima sampel tanih atas (0-15 cm) telah diambil dari enam stesen persampelan di kawasan Pulau Indah, Klang, Selangor. Sampel ini telah dianalisis untuk menentukan kandungan logam berat, ciri fiziko-kimia dan nutrien di dalam tanih. Tanih telah dikutip dari stesen berasingan berdasarkan jenis tanih dan aktiviti pembangunan gunatanah yang berlainan. Didapati bahawa tanih di kawasan kajian didominasi oleh tekstur pasir kecuali di Stesen 1 dan 6 yang didominasi oleh tekstur lempung. Kandungan nutrien tersedia dipengaruhi oleh jenis tanih, dengan purata kandungan K dan Mg tinggi dalam tanih lempung manakala purata kandungan PO tinggi dalam tanih pasir. Kandungan nutrien terlarut pula dipengaruhi oleh aktiviti gunatanah, dengan kandungan NO-N dan NH-N terlarut adalah tinggi di kawasan pertanian manakala kandungan SO terlarut pula tinggi di kawasan terminal minyak dan kawasan industri logam. Ciri kimia dipengaruhi oleh jenis tanih di mana pH, kapasiti pertukaran kation dan kandungan bahan organik lebih tinggi di dalam tanih lempung berbanding tanih pasir. Kandungan logam berat dipengaruhi oleh jenis guna tanah, dengan kandungan Pb dan Zn tinggi di kawasan pertanian. Kandungan As dan Co pula adalah tinggi di kawasan terminal minyak dan industri logam. Kawasan gudang menunjukkan bacaan yang tertinggi bagi Ni dan Cr manakala kawasan Pelabuhan Sarat menunjukkan bacaan Cu yang tertinggi. Secara keseluruhannya, kepekatan kandungan Pb, Cu, Ni dan Co masih berada di bawah paras yang berpotensi toksik dalam tanih manakala sebahagian dari nilai As, Cr dan Zn melebihi paras yang berpotensi toksik dalam tanih.
    Matched MeSH terms: Bivalvia
  5. Wahi Abdul Rashid, Vun, Leong Wan, Mohd Harun Abdullah
    Trop Life Sci Res, 2009;20(1):-.
    MyJurnal
    Heavy metal accumulation and depuration may alter the effectiveness of Meretrix meretrix as a biomonitoring organism for water quality assessment. Therefore, this study was conducted to evaluate the effects of heavy metal accumulation and depuration on M. meretrix, by immersing it in Copper (Cu), Zinc (Zn), and Lead (Pb)
    solutions under laboratory conditions. The results showed that M. meretrix is able to accumulate Cu, Zn, and Pb at the rate of 0.99, 21.80, and 0.57 μg/g per day, respectively, and depurates at the rate of 0.42, 23.55, and 1.01 μg/g per day, respectively. These results indicate that M. meretrix could be effectively used as a biomonitoring organism for Cu because the accumulation rate is significantly (p ≤ 0.05) higher than the depuration rate. However, this was not the case for Zn because the accumulation rate was almost similar to the depuration rate, while for Pb, accumulation or depuration did not occur in M. meretrix.
    Matched MeSH terms: Bivalvia
  6. Wan Jusoh WN, Matori KA, Mohd Zaid MH, Zainuddin N, Ahmad Khiri MZ, Abdul Rahman NA, et al.
    Materials (Basel), 2021 Feb 18;14(4).
    PMID: 33670465 DOI: 10.3390/ma14040954
    Glass ionomer cement (GIC) is a well-known restorative material applied in dentistry. The present work aims to study the effect of hydroxyapatite (HA) addition into GIC based on physical, mechanical and structural properties. The utilization of waste materials namely clam shell (CS) and soda lime silica (SLS) glass as replacements for the respective CaO and SiO2 sources in the fabrication of alumino-silicate-fluoride (ASF) glass ceramics powder. GIC was formulated based on ASF glass ceramics, polyacrylic acid (PAA) and deionized water, while 1 wt.% of HA powder was added to enhance the properties of the cement samples. The cement samples were subjected to four different ageing times before being analyzed. In this study, the addition of HA caused an increment in density and compressive strength results along with ageing time. Besides, X-ray Diffraction (XRD) revealed the formation of fluorohydroxyapatite (FHA) phase in HA-added GIC samples and it was confirmed by Fourier Transform Infrared (FTIR) analysis which detected OH‒F vibration mode. In addition, needle-like and agglomeration of spherical shapes owned by apatite crystals were observed from Field Emission Scanning Electron Microscopy (FESEM). Based on Energy Dispersive X-ray (EDX) analysis, the detection of chemical elements in the cement samples were originated from chemical compounds used in the preparation of glass ceramics powder and also the polyacid utilized in initiating the reaction of GIC.
    Matched MeSH terms: Bivalvia
  7. Wan Shahrazad WS, Ariffin Hj Z, Mohd AS
    Jurnal Psikologi Malaysia, 2010;olume 24:137-149.
    Isu kepuasan kerja telah menjadi fokus banyak kajian dalam psikologi industri dan organisasi kerana ia merupakan satu petunjuk kepada pencapaian tinggi. Banyak instrumen psikologi telah dibina untuk mengukur kepuasan kerja dan satu daripadanya ialah Job Descriptive Index (JDI). Kajian ini bertujuan menilai aspek psikometrik Job Descriptive Index (JDI) khususnya kesahan konvergen dan diskriminan. Sejumlah 366 responden dipilih dalam kalangan pegawai polis yang berkhidmat sebagai pegawai keselamatn di satu organisasi. Mereka diminta menjawab JDI. Analisis statistik yang digunakan ilah kolerasi Pearson, alfa Cronbach dan analisis multitret-multimetod menggunakan pekali W. Keputusan menunjukkan bahawa JDI mempunyai kesahan konvergen yang memuaskan dengan lima subskala Minnesota Satisfaction Questionnaire (MSQ). Dapatan ini jelas menunjukkan bukti kesahan gagasan telah diperoleh dalam analisis matriks multitret-multimetod. Disamping itu, JDI juga menunjukkan kesahan kriteria dengan kolerasi signifikan di antara kepuasan kerja dan komitmen organisasi. Bukti-bukti kesahan gagasan dan kriteria ini disokong oleh keputusan alfa cronbach yang tinggi menunjukkan bahawa ia adalah satu instrumen yang mempunyai kesahan dan kebolehpercayaan untuk mengukur kepuasan kerja.
    Matched MeSH terms: Bivalvia
  8. Wolswijk G, Satyanarayana B, Dung LQ, Siau YF, Ali ANB, Saliu IS, et al.
    J Hazard Mater, 2020 04 05;387:121665.
    PMID: 31784131 DOI: 10.1016/j.jhazmat.2019.121665
    Charcoal production activities at the Matang Mangrove Forest Reserve (MMFR) in Peninsular Malaysia have a potential to emit volatile compounds such as Hg back into the ambient environment, raising concerns on the public health and safety. The present study was aimed at analyzing Hg concentration from different plant/animal tissues and sediment samples (in total 786 samples) to understand clearly the Hg distribution at the MMFR. Leaves of Rhizophora spp. showed higher Hg concentration with an increasing trend from young, to mature, to senescent and decomposing stages, which was possibly due to accumulation of Hg over time. The low Hg concentration in Rhizophora roots and bark suggests a limited absorption from the sediments and a meagre accumulation/partitioning by the plant tissue, respectively. In the case of mangrove cockles the concentration of Hg was lower than the permissible limits for seafood consumption. Although the mangrove gastropod - Cassidula aurisfelis Bruguière had rather elevated Hg in the muscle tissue, it is still less than the environmental safely limit. Beside the chances of atmospheric deposition for Hg, the sediment samples were found to be unpolluted in nature, indicating that in general the MMFR is still safe in terms of Hg pollution.
    Matched MeSH terms: Bivalvia/chemistry
  9. Wong KW, Yap CK, Nulit R, Hamzah MS, Chen SK, Cheng WH, et al.
    Environ Sci Pollut Res Int, 2017 Jan;24(1):116-134.
    PMID: 27822691 DOI: 10.1007/s11356-016-7951-z
    The present study aimed to assess the effects of anthropogenic activities on the heavy metal levels in the Langat River by transplantation of Corbicula javanica. In addition, potential ecological risk indexes (PERI) of heavy metals in the surface sediments of the river were also investigated. The correlation analysis revealed that eight metals (As, Co, Cr, Fe, Mn, Ni, Pb and Zn) in total soft tissue (TST) while five metals (As, Cd, Cr, Fe and Mn) in shell have positively and significantly correlation with respective metal concentration in sediment, indicating the clams is a good biomonitor of the metal levels. Based on clustering patterns, the discharge of dam impoundment, agricultural activities and urban domestic waste were identified as three major contributors of the metals in Pangsun, Semenyih and Dusun Tua, and Kajang, respectively. Various geochemical indexes for a single metal pollutant (geoaccumulation index (I geo), enrichment factors (EF), contamination factor (C f) and ecological risk (Er)) all agreed that Cd, Co, Cr, Cu, Fe, Mn, Ni and Zn are not likely to cause adverse effect to the river ecosystem, but As and Pb could pose a potential ecological risk to the river ecosystem. All indexes (degree of contamination (C d), combined pollution index (CPI) and PERI) showed that overall metal concentrations in the tropical river are still within safe limit. River metal pollution was investigated. Anthropogenic activities were contributors of the metal pollution. Geochemical indexes showed that metals are within the safe limit.
    Matched MeSH terms: Bivalvia/drug effects; Bivalvia/metabolism*
  10. Wong, C.M., Abdullah Aliff, A.W., Mohd Shahrol, A.W., Diana Safraa, S., Lavanyah, S., Aniza, I., et al.
    Medicine & Health, 2020;15(1):141-155.
    MyJurnal
    Penyakit lemah jantung merupakan antara lima punca utama kematian penyakit kronik tidak berjangkit berdasarkan rujukan World Health Organization. Sekitar 20% pesakit kegagalan jantung di seluruh dunia memasuki wad semula dalam jangka masa 30 hari selepas discaj. Hal ini demikian biasanya akibat daripada tidak mematuhi penyekatan sukatan air diminum atau pun perkembangan penyakit. Kajian ini bertujuan untuk mengenalpasti kadar masuk wad dalam 30 hari selepas discaj daripada kegagalan jantung dan faktor berkaitan di Pusat Perubatan Universiti Kebangsaan Malaysia (PPUKM) pada tahun 2016-2017 dengan menggunakan data casemix. Berdasarkan data kod, perbelanjaan digunakan untuk masuk wad semula dalam 30 hari diambilkira. Kadar masuk wad untuk kegagalan jantung dalam 30 hari selepas discaj bagi punca yang sama adalah 53.5% dan 43.5% bagi tahun 2016 dan 2017, sama kadar dengan hospital mengajar yang lain tetapi lebih tinggi daripada kadar di negara maju. Selepas diselaraskan, hanya faktor umur pesakit dan tahap keterukan penyakit menunjukkan kaitan yang bermakna dengan kemasukan wad dalam 30 hari selepas discaj bagi kegagalan jantung. Jangka masa berada dalam wad dan perbelanjaan untuk kemasukkan wad adalah lebih rendah daripada yang sepatutnya dicapai. Sebanyak RM80,329.73 telah dijimatkan pada tahun 2017 atas rawatan yang pantas dan rancangan penjagaan yang komprehensif diberi kepada 19.3% pesakit gagal jantung tahap keterukan tiga. Penurunan kadar kemasukan wad semula dalam 30 hari selepas discaj juga menjimatkan kos pesakit dan menunjukkan penjagaan klinikal yang mantap dan strategi rawatan yang rapi. Kajian casemix ini boleh digunakan sebagai rujukan untuk penentuan bajet bagi unit kardiologi di PPUKM.
    Matched MeSH terms: Bivalvia
  11. YAP JAA YEE, AMIZA MAT AMIN
    MyJurnal
    This study aimed to determine the physicochemical properties of undulated surf clam (Paphia undulata) hydrolysate as affected by the degree of hydrolysis (DH). Three levels of DH of undulated surf clam hydrolysate were prepared which were DH 36.57% (without any enzymatic hydrolysis), DH 58.25% (0.5% Alcalase®; 5 min; pH 7.5; 60ºC) and DH 91.26% (1% Alcalase®; 30 min; pH 7.5; 60ºC). After protein hydrolysis, the undulated surf clam hydrolysates were centrifuged, and their supernatants were freeze-dried. This study found that the protein hydrolysate with lower DH (DH 36.57%) gave lower protein content and higher ash and fat contents compared to other samples (DH 58.25% and DH 91.26%). However, the carbohydrate content is similar in all samples (16.56-20.04%). This study also found that foaming properties (29.43-67.50%), emulsifying capacity (11.94-110.52%) and peptide solubility (57.61-94.08%) were affected by the DH. As DH increased, the emulsifying capacity decreased, while peptide solubility increased. While the foaming capacity increased with increasing DH until it reached a maximum value and level off afterwards. For colour parameters, although there were differences between L*, a* and b* values for all three samples, a fluctuating pattern was noted with DH. DH also did not affect the water-holding and oil-holding capacity of undulated surf clam hydrolysate. This study shows that certain physicochemical properties of undulated surf clam hydrolysate can be tailored by adjusting the degree of hydrolysis.
    Matched MeSH terms: Bivalvia
  12. Yap CK, Ismail A, Omar H, Tan SG
    Environ Int, 2004 Feb;29(8):1097-104.
    PMID: 14680893
    Studies on toxicities and tolerances of cadmium (Cd), copper (Cu), lead (Pb) and zinc (Zn) in the brown alga Isochrysis galbana and in the green-lipped mussel Perna viridis were conducted by short-term bioassays using endpoints growth production and mortality, respectively. The 5-day EC(50) and 24-h LC(50) of these heavy metals were determined in the brown alga and mussel, respectively. The EC(50) values calculated for the alga were 0.74 mg/l for Cd, 0.91 mg/l for Cu, 1.40 mg/l for Pb and 0.60 mg/l for Zn. The LC(50) values for the mussels were 1.53 mg/l for Cd, 0.25 mg/l for Cu, 4.12 mg/l for Pb and 3.20 mg/l for Zn. These LC(50) values were within the concentration ranges as reported by other authors who used P. viridis as the test organism. Based on these EC(50) and LC(50) values, the alga was most sensitive to Zn, followed by Cd, Cu and Pb while the mussel was most sensitive to Cu, followed by Cd, Zn and Pb. Differences in the trophic levels, metal handling strategies, biology and ecology of the primary producer (brown alga) and the primary consumer (mussel) are believed to be the plausible causes for the different toxicities and tolerances of the metals studied.
    Matched MeSH terms: Bivalvia/physiology*
  13. Yap CK, Ismail A, Tan SG
    Environ Int, 2003 Jul;29(4):521-8.
    PMID: 12705949
    Concentrations of cadmium (Cd), lead (Pb) and zinc (Zn) in total soft tissues (ST) and byssus (BYS) of the green-lipped mussel Perna viridis from 11 different geographical locations off the west coast of Peninsular Malaysia were determined. The metal concentrations distributed between the BYS and ST were compared. The results of this study indicated that higher levels of Cd (1.31 microg/g), Pb (38.49 microg/g) and Zn (206.52 microg/g) were accumulated in the BYS than in the total ST (Cd: 0.29 microg/g; Pb: 8.27 microg/g; Zn: 102.6 microg/g). Semi-static and short period controlled laboratory experiments were also conducted for the accumulation and depuration of Cd, Pb and Zn in the total ST and BYS of P. viridis. The ratios (BYS/ST) for Pb and Cd from the laboratory experiments showed that the total ST accumulated more metals than the BYS. Therefore, these laboratory results disagreed with those found for the field samples. However, the laboratory results for the Zn ratio (BYS/ST) agreed with those of the field samples. It was evident that when compared to the ST, the BYS was a more sensitive biomonitoring organ for Zn while it could be a complementary organ for Cd and Pb in the total ST. Since total ST of P. viridis had been reported to have regulative mechanism for Zn, its BYS can be used as a biomonitoring organ for the identification of coastal areas exposed to Zn pollution.
    Matched MeSH terms: Bivalvia/chemistry*
  14. Yap CK, Ismail A, Tan SG, Omar H
    Environ Int, 2002 Apr;28(1-2):117-26.
    PMID: 12046948
    Total concentrations and speciation of cadmium (Cd), copper (Cu), lead (Pb) and zinc (Zn) in surface sediment samples were correlated with the respective metal measured in the total soft tissue of the green-lipped mussel Perna viridis, collected from water off the west coast of Peninsular Malaysia. The aim of this study is to relate the possible differences in the accumulation patterns of the heavy metals in P. viridis to those in the surface sediment. The sequential extraction technique was employed to fractionate the sediment into 'freely leachable and exchangeable' (EFLE), 'acid-reducible,' 'oxidisable-organic' and 'resistant' fractions. The results showed that significant (P .05) was found between Zn in P viridis and all the sediment geochemical fractions of Zn and total Zn in the sediment. This indicated that Zn was possibly regulated from the soft tissue of P. viridis. The present results supported the use of P viridis as a suitable biomonitoring agent for Cd, Cu and Pb.
    Matched MeSH terms: Bivalvia/metabolism; Bivalvia/chemistry*
  15. Yap CK, Sharifinia M, Cheng WH, Al-Shami SA, Wong KW, Al-Mutairi KA
    PMID: 33805997 DOI: 10.3390/ijerph18073386
    The objective of this commentary is to promote the use of bivalves as biomonitors, which is a part of the continual efforts of the International Mussel Watch. This commentary is an additional discussion on "Bivalve mollusks in metal pollution studies: From bioaccumulation to biomonitoring" by Zuykov et al., published in Chemosphere 93, 201-208. The present discussion can serve as a platform for further insights to provide new thoughts and novel ideas on how to make better use of bivalves in biomonitoring studies. The certainty of better and more extensive applications of mollusks in environmental monitoring in the future is almost confirmed but more studies are urgently needed. With all the reported studies using bivalves as biomonitors of heavy metal pollution, the effectiveness of using Mussel Watch is beyond any reasonable doubts. The challenge is the development of more accurate methodologies for of heavy metal data interpretation, and the precision of the biomonitoring studies using bivalves as biomonitors, whether in coastal or freshwater ecosystems. Lastly, inclusion of human health risk assessment of heavy metals in commercial bivalves would make the research papers of high public interest.
    Matched MeSH terms: Bivalvia*
  16. Yen LY, Jayaprakash PT
    Forensic Sci Int, 2007 Jul 20;170(1):1-7.
    PMID: 17023133
    Detection of diatom frustules in bone marrow (diatom test) is used for diagnosing ante-mortem drowning where the usual signs of drowning are not present in dead bodies recovered from water. However, controversies over the reliability of diatom test results are continuing. There have been indications on the possibilities of diatoms entering into systemic circulation from atmospheric air, food and drink. While diatoms have been demonstrated in the gut content of edible marine forms such as shrimps and clams, the present study, for the first time, provides empirical evidence on the prevalence as well as abundance of diatom frustules in the samples of cooked non-vegetarian foodstuffs that impend human consumption in Kelantan, Malaysia. It is found that 50 g each of cleaned and cooked prawns and of clams impending human consumption contain about 8360 and 29,054 diatom frustules, respectively. A person accustomed to prawn and clam food would be ingesting an estimated 2 million diatoms in a single year. Considering the suggestion that detection of five diatom frustules in 10 g of bone marrow would suffice for concluding drowning as mode of death, and the fact that there is yet no proof that diatom frustules do not enter into the human systemic circulation through the digestive tract, the estimated number of diatom frustules routinely ingested acquires significance since entry of a few of such ingested frustules into the systemic circulation can lead to false positive test results. The findings of this research raise two important issues: first, population based routine food related diatom ingestion requires to be estimated, and, second, studies have to be initiated to categorically prove or disprove the possibility of entry of diatom frustules into the systemic circulation via the digestive tract.
    Matched MeSH terms: Bivalvia/microbiology
  17. Yoke-Kqueen, C., Teck-Ee, K., Son, R, Yoshitsugu, N., Mitsuaki, N.
    MyJurnal
    Molecular typing methods have been widely applied for many purposes. In this study, such methods were adopted as DNA fingerprinting tools to determine the origin and divergence of virulent Vibrio parahaemolyticus strains found in local seafood. Although not all strain carry virulent tdh and trh gene, increasing prevalence demands an effective fingerprinting scheme which can constantly monitor and trace the sources of such emerging food pathogens. By using ERIC-, RAPD-, and BOX-PCR methods, 33 Vibrio parahaemolyticus isolates from local Malaysia bloody clam (Anadara granosa) and Lala (Orbicularia orbiculata) with confirmed presence of tdh and trh gene were characterised, followed by determination of clonal relatedness among virulent strains using cluster analysis and discriminatory index. This study also involved application of Immunomagnetic Separation (IMS) Method which significantly improved the specificity of strain isolation. Cluster analysis using Unweighted Pair Group Mathematical Averaging (UPGMA) and Dice Coefficient shown clustering according to isolation food source, IMS level and haemolysin gene possessed. Nevertheless, different DNA fingerprinting methods generated different clustering at different similarity cut-off percentage, regardless as individual or as composite dendrograms. ERIC- and RAPD-PCR composite fingerprinting relatively shown the highest discriminatory index at following similarity cutoff percentage: 0.68 at 50%; 0.83 at 65%; and 0.93 at 75%. Discriminatory power increased with similarity cut-off percentage. However, result also suggested that BOX-PCR might be an effective fingerprinting tool, as it generated three clusters with no single-colony isolate at 70% similarity cut-off. This study not only achieved its objective to determine clonal relatedness among virulent strains from local seafood via characterisation, but also speculated the best possible combination of molecular typing methods to effectively do so.
    Matched MeSH terms: Bivalvia
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