Inactivation of smoothened protein (SMO) by the antagonists in SHH-driven cancer types is essential for inhibition of cancer progression. This article presents molecular dynamics (MD) trajectories of water solution of three protein-ligand complexes smoothened-β-sitosterol (SMO-BST), smoothened-sonidegib (SMO-SNG) and smoothened-cholesterol (SMO-CLR) using CHARMM36 and SPC/E water model combination. Additionally, the work presents the topologies and trajectories of GROMACS files that were employed to analyse the protein-ligand interaction types (PyContact) and binding energy calculation (g_mmpbsa). The data demonstrated that equilibrated models of SMO-SNG and SMO-CLR complexes showed crucial residues that almost similar for interaction and contribution energy as previously reported in laboratory setup (in vitro). Initial simulations confirmed the role of ARG451 and TRP535 in the dynamic regulation of SMO. These data then were used as a reference for understanding the molecular dynamics of SMO-BST complex and thus predicted its mechanism of action.
Droughts are recurring events in Australia and cause a severe effect on agricultural and water resources. However, the studies about agricultural drought risk mapping are very limited in Australia. Therefore, a comprehensive agricultural drought risk assessment approach that incorporates all the risk components with their influencing criteria is essential to generate detailed drought risk information for operational drought management. A comprehensive agricultural drought risk assessment approach was prepared in this work incorporating all components of risk (hazard, vulnerability, exposure, and mitigation capacity) with their relevant criteria using geospatial techniques. The prepared approach is then applied to identify the spatial pattern of agricultural drought risk for Northern New South Wales region of Australia. A total of 16 relevant criteria under each risk component were considered, and fuzzy logic aided geospatial techniques were used to prepare vulnerability, exposure, hazard, and mitigation capacity indices. These indices were then incorporated to quantify agricultural drought risk comprehensively in the study area. The outputs depicted that about 19.2% and 41.7% areas are under very-high and moderate to high risk to agricultural droughts, respectively. The efficiency of the results is successfully evaluated using a drought inventory map. The generated spatial drought risk information produced by this study can assist relevant authorities in formulating proactive agricultural drought mitigation strategies.
The present work deals with the production of paper materials from onion peels (Allium Cepa) fibers
as an alternative potential non-wood fiber. The onion peels were obtained from a local small and
medium food industry. The onion peels were cooked at 120, 150 and 180 minutes. The peels were
grinded and poured in a set of mould and deckle for the formation of a thin sheet of paper. The
physical, mechanical, morphological characteristics and water rise capillary values (KLEMM
Method) were evaluated to determine its suitability for a paper material. The results show that the
increase in cooking time from 120 to 180 minutes resulted in an increase in the tensile index from
32.28N*m/g to 42.13N*m/g and tear index from 9.80mN*m2
/g to 15.62mN*m2
/g. The bonding
strength increased due to higher number of fibers, finer fiber size, and increase in the fiber contact
area and fiber distribution. The high porosity area affects the performance of water rise capillary
values of the paper sheets. The onion peels fiber gave impressive handsheets characteristics when
compared with other sources of non-wood fibers.
Recent literature on marine fish farming brands it as potentially compatible with sustainable resource use, conservation, and human nutrition goals, and aligns with the emerging policy discourse of 'blue growth'. We advance a two-pronged critique. First, contemporary narratives tend to overstate marine finfish aquaculture's potential to deliver food security and environmental sustainability. Second, they often align with efforts to enclose maritime space that could facilitate its allocation to extractive industries and conservation interests and exclude fishers. Policies and investments that seek to increase the availability and accessibility of affordable and sustainable farmed aquatic foods should focus on freshwater aquaculture.
Condition Index (CI) was used to estimate the reproductive biology cycle of the hard clam Meretrix lyrata based on dry
body weight and shell weight. High CI value was observed due to the increase in the body weight of the hard clam that
corresponding to the maturity stage and early spawning. The CI value of M. lyrata from Buntal Village, Kuching, Sarawak
showed three highest peaks during the 12-month study on May and October 2013 and March 2014. The lowest CI values
were obtained in September and November 2013 and April 2014. Ammonia nitrogen was the only water parameter that
significantly correlated to the CI values. The CI application is important to estimate the maturity of hard clam gonad
to facilitate conservation activity through the hard clam harvesting out of the gonad maturation and spawning period.
In this work, nanocomposite ultrafiltration (UF) membranes were synthesized through addition of different quantities of amino-functionalized nanocrystalline cellulose (NCs) in order to improve membrane anti-fouling resistance against oil depositions. The characterization results demonstrated that the overall porosity and hydrophilicity of the membranes were improved significantly upon addition of NCs despite a decrease in the pore size of nanocomposite membranes. The UF performance results showed that the nanocomposite membrane incorporated with 1 wt% NCs achieved an optimal water flux improvement, i.e., approximately 43% higher than the pristine membrane. Such nanocomposite membrane also exhibited promising oil rejection (>98.2%) and excellent water flux recovery rate of ˜98% and ˜85% after one and four cycles of treating 250-ppm oil-in-water emulsion solution, respectively. The desirable anti-fouling properties of nanocomposite membrane can be attributed to the existence of hydrophilic functional groups (-OH) on the surface of membrane stemming from addition of NCs that renders the membrane less vulnerable to fouling during oil-in-water emulsion treatment.
Many studies have investigated natural convection heat transfer from the outside surface of horizontal and vertical cylinders in both constant heat flux and temperature conditions. However, there are poor studies in natural convection from inclined cylinders. In this study, free convection heat transfer was examined experimentally from the outside surface of a cylinder for glycerol and water at various heat fluxes. The tests were performed at 10 different inclination angles of the cylinder, namely, φ = 0°, 10°, 20°, 30°, 40°, 50°, 60°, 70°, 80°, and 90°, measured from the horizon. Our results indicated that the average Nusselt number reduces with the growth in the inclination of the cylinder to the horizon at the same heat flux, and the average Nusselt number enhanced with the growth in heat flux at the same angle. Also, the average Nusselt number of water is greater than that of glycerol. A new experimental model for predicting the average Nusselt number is suggested, which has a satisfactory accuracy for experimental data.
This article demonstrates a novel nanoscale surface modification method to enhance the selectivity of porous poly(dimethylsiloxane) (PDMS) in removing oil from water. The surface modification method is simple and low cost by using sugar as a sacrificial template for temporal adhering of carbon nanotubes (CNT) before addition of PDMS prepolymer to encapsulate the CNT on its surface once polymerized. The PDMS-CNT demonstrated a tremendous increase in absorption capacity up to 3-fold compared to previously reported absorbents composed solely of PDMS. Besides showcasing excellent absorption capacity, the PDMS-CNT also shows a faster absorption rate (25 s) as compared to that of pure PDMS (40 s). The enhanced absorption rate is due to the incorporation of CNT, which roughens the surface of the polymer at the nanoscale and lowers the surface energy of porous PDMS while at the same time increasing the absorbent hydrophobicity and oleophilicity. This property makes the absorbent unique in absorbing only oil but repelling water at the same time. The PDMS-CNT is an excellent absorbent material with outstanding recyclability and selectivity for removing oil from water.
Evaluating water level changes at intertidal zones is complicated because of dynamic tidal inundation. However, water level changes during different tidal phases could be evaluated using a digital surface model (DSM) captured by unmanned aerial vehicle (UAV) with higher vertical accuracy provided by a Global Navigation Satellite System (GNSS). Image acquisition using a multirotor UAV and vertical data collection from GNSS survey were conducted at Kilim River, Langkawi Island, Kedah, Malaysia during two different tidal phases, at high and low tides. Using the Structure from Motion (SFM) algorithm, a DSM and orthomosaics were produced as the main sources of data analysis. GNSS provided horizontal and vertical geo-referencing for both the DSM and orthomosaics during post-processing after field observation at the study area. The DSM vertical accuracy against the tidal data from a tide gauge was about 12.6 cm (0.126 m) for high tide and 34.5 cm (0.345 m) for low tide. Hence, the vertical accuracy of the DSM height is still within a tolerance of ±0.5 m (with GNSS positioning data). These results open new opportunities to explore more validation methods for water level changes using various aerial platforms besides Light Detection and Ranging (LiDAR) and tidal data in the future.
Functional property changes in Phaleria macrocarpa fruit during ripening on tree were studied. Results showed that juice extracted from fruit flesh had low acidity and soluble solid content. Fruit acidity decreased but soluble solids increased as the fruit ripened. In terms of antioxidant content, ascorbic acid, DPPH free radical scavenging activities and total phenolic content were, however, the lowest in fully ripe fruit flesh while the unripe fruit flesh had the highest. High percentage of these antioxidants was water soluble. This study suggests that the unripe fruits should be harvested for valuable medicinal product development instead of the fully ripe fruits.
The mechanical properties of electrospun polyacrylonitrile (PAN)-based membranes for ultrafiltration, such as oil-water separation and heavy metals from water, are often characterised in the dry state but little is known about the membrane properties in the hydrated state. This dataset comprised mechanical properties and structure-related properties of electrospun PAN-based membranes. The mechanical dataset described the yield strength and strain, stiffness, resilience energy, fracture strength, strain at fracture and fracture toughness of electrospun neat PAN and halloysite nanotube (HNT) reinforced PAN membranes in both hydrated and dry states. The data related to the hydrated state were derived from direct measurements of the mechanical properties of the PAN-based membrane using a novel environmental micromechanical tester. The structure-related dataset comprised electron micrographs and quantitative measurements (fibre diameter and pore diameter) derived from the micrographs. For further interpretation and discussion of the dataset, the reader is referred to the research data article, "Direct measurement of the elasticity and fracture properties of electrospun polyacrylonitrile/halloysite fibrous mesh in water" (Govindasamy et al., 2014).
This work aimed to evaluate the effect of Atmospheric Cold Plasma (ACP) on the quality of mango flour noodles (NMF). ACP treatment of 5 minutes duration on the surface of the noodles strands were performed and evaluated during three days of storage by monitoring parameters related to colour, water activity, antioxidant activity and total phenolic content. The lightness value (L*) was higher for untreated samples (NMF (U)) than for treated samples (NMF (T)), while a greater increased in the redness (a*) and yellowness (b*) values were observed for the NMF (T). The changes in aw, antioxidant activity and total phenolic content (TPC) were negligible. However the NMF (T) showed significant different (p
The microalgal-bacterial co-cultivation was adopted as an alternative in making microbial-based biofuel production to be more feasible in considering the economic and environmental prospects. Accordingly, the microalgal-bacterial symbiotic relationship was exploited to enhance the microbial biomass yield, while bioremediating the nitrogen-rich municipal wastewater. An optimized inoculation ratio of microalgae and activated sludge (AS:MA) was predetermined and further optimization was performed in terms of different increment ratios to enhance the bioremediation process. The nitrogen removal was found accelerating with the increase of the increment ratios of inoculated AS:MA, though all the increment ratios had recorded a near complete total nitrogen removal (94-95%). In light of treatment efficiency and lipid production, the increment ratio of 0.5 was hailed as the best microbial population size in accounting the total nitrogen removal efficiency of 94.45%, while not compromising the lipid production of 0.241 g/L. Moreover, the cultures in municipal wastewater had attained higher biomass and lipid productions of 1.42 g/L and 0.242 g/L, respectively, as compared with the synthetic wastewater which were only 1.12 g/L (biomass yield) and 0.175 g/L (lipid yield). This was possibly due to the presence of trace elements which had contributed to the increase of biomass yield; thus, higher lipid attainability from the microalgal-bacterial culture. This synergistic microalgal-bacterial approach had been proven to be effective in treating wastewater, while also producing useful biomass for eventual lipid production with comparable net energy ratio (NER) value of 0.27, obtained from the life-cycle analysis (LCA) studies. Thereby, contributing towards long-term sustainability and possible commercialization of microbial-based biofuel production.
The origin of formation water salinity variation in Chang 9 stratum, Jiyuan oilfield, Ordos basin is studied here. 91 formation water samples show that water salinity is characterized by a wide range and a complex plane distribution. In order to find out the main cause of such distribution complexity and reveal the relationship between formation water and evolution of reservoir traps, core data, chemical analysis result of formation water and log data are analyzed from perspectives of diagenesis and tectonism. And then, their characteristics are presented as the followings. In high salinity area, tuffaceous mudstone interlayer is found growing. Besides, the condition of Na++K+ is opposite to that of Ca2+, for its rate of concentration increase slows down with total salinity accumulating. In low salinity area, while, with fracture and faults developing, some formation water of CaCl2 type turns into MgCl2, NaHCO3 or Na2SO4 type. The cause is thus proposed to be composed of two aspects. One covers tuff alteration and later diagenesis for the high salinity. To be specific, montmorillonite, developed from tuff alteration, absorbs cation selectively and then ions migrate, during which more Na++K+ get lost, while more Ca2+ reserved. Afterwards, those reserved Ca2+ get released with montmorillonite transforming to illite, which results in a loss of Na++K+ and accumulation of Ca2+. Lots of ions are released into formation water during that process and later diagenetic process, which leads to the high water salinity. The other aspect is the development of faults and fractures, through which, the upper low salinity formation water gets connected. And that is the main cause of low salinity. At last, geological significance is discussed from two angles. Firstly, tuff alteration and later diagenesis are pivotal to reservoir reconstruction; and secondly, faults and fractures play an important role in oil transportation and storage.
It is important to monitor the concentration of toxic metals in the Sungai Kuantan as it serves many communities in terms of domestic, fisheries and agriculture purpose. In order to determine the distributions of dissolved and particulate As and Hg in Sungai Kuantan and evaluate its changes temporally and spatially, water samples were collected from the surface and bottom layers in a grid of 9 stations from estuary towards the upstream of Sungai Kuantan from May 2012 till October 2012. The dissolved metals were pre-concentrated using Chelex-100 while particulate metals were digested using Teflon bomb and subsequently were analyzed using ICP-MS. Dissolved As ranging from 4.650 to 36.894 µg L-1 while dissolved Hg ranging from BDL to 0.011 µg L-1. Particulate As and Hg varied from 0.650 to 86.087 mg L-1 and BDL to 5.873 mg L-1, respectively. Higher concentration of the dissolved elements were found mainly in October 2012 and particulate elements concentration mostly higher in May 2012. The source of the studied metals in the river may be the run-off from the effluent discharges and other natural sources. The toxic elements studied in Sungai Kuantan waters were still below the Interim Marine Water Quality Standard (INWQS) permissible limits.
Global patterns of biodiversity have emerged for soil microorganisms, plants and animals, and the extraordinary significance of microbial functions in ecosystems is also well established. Virtually unknown, however, are large-scale patterns of microbial diversity in freshwaters, although these aquatic ecosystems are hotspots of biodiversity and biogeochemical processes. Here we report on the first large-scale study of biodiversity of leaf-litter fungi in streams along a latitudinal gradient unravelled by Illumina sequencing. The study is based on fungal communities colonizing standardized plant litter in 19 globally distributed stream locations between 69°N and 44°S. Fungal richness suggests a hump-shaped distribution along the latitudinal gradient. Strikingly, community composition of fungi was more clearly related to thermal preferences than to biogeography. Our results suggest that identifying differences in key environmental drivers, such as temperature, among taxa and ecosystem types is critical to unravel the global patterns of aquatic fungal diversity.
Pressurized water reactor (PWR) type AP1000 is a third generation of a nuclear
power plant. The primary system of PWR using uranium dioxide to generate heat energy
via fission process. The process influences temperature, pressure and pH value of water
chemistry of the PWR. The aim of this paper is to transform the primary system of PWR
using fuzzy autocatalytic set (FACS). In this work, the background of primary system
of PWR and the properties of the model are provided. The simulation result, namely
dynamic concentration of PWR is verified against published data.
This study was aimed at establishing a protocol for water sample processing for the detection of Blastocystis sp. using distilled water spiked with Blastocystis sp. cysts. The study established a protocol involving eight technical aspects, namely, storage temperature, storage duration, minimum water sample volume, optimum relative centrifugal force, centrifugation duration, minimum number of cyst for inoculation in Jones' medium and turn-around-time for the detection of vacuolar forms of Blastocystis sp. Results showed a minimum of 1.0 L water sample should be collected and processed on the same day. Otherwise, it should be stored at 4 °C and processed within 3 days. Water sample should be centrifuged at 1400×g for 10 min. For the isolation of Blastocystis sp. cysts, parasite pellet could be layered on top of Ficoll-Paque™ PLUS, centrifuged at 1400×g for 20 min and washed twice using 0.9% saline with centrifugation at 1400×g for 10 min. A minimum of 1 × 105 cysts could then be inoculated in Jones' medium supplement with 10% horse serum, incubated at 37 °C and examined for any presence of vacuolar forms of Blastocystis sp. after 3 days of inoculation. A protocol for water sample processing for the detection of Blastocystis sp. has successfully been established. The protocol was validated using 106 various water samples. This protocol will be very useful in determining the extent of Blastocystis sp. contamination in water sources in order to identify the seriousness of contamination.
Setiu Wetland is rapidly developing into an aquaculture and agriculture hub, causing concern about its water quality condition. To address this issue, it is imperative to acquire knowledge of the spatial and temporal distributions of pollutants. Consequently, this study applied combinations of hydrodynamic and particle tracking models to identify the transport behaviour of pollutants and calculate the residence time in Setiu Lagoon. The particle tracking results indicated that the residence time in Setiu Lagoon was highly influenced by the release location, where particles released closer to the river mouth exhibited shorter residence times than those released further upstream. Despite this fact, the pulse of river discharges successfully reduced the residence time in the order of two to twelve times shorter. Under different tidal phases, the residence time during the neap tide was longer regardless of heavy rainfalls, implying the domination of tidal flow in the water renewal within the lagoon.
Climate change is primarily manifested by elevated temperature and carbon dioxide (CO2) levels and is projected to provide suitable cultivation grounds for pests and pathogens in the otherwise unsuitable regions. The impacts of climate change have been predicted in many parts of the world, which could threaten global food safety and food security. The aim of the present work was therefore to examine the interacting effects of water activity (aw) (0.92, 0.95, 0.98 aw), CO2 (400, 800, 1200 ppm) and temperature (30, 35 °C and 30, 33 °C for Fusarium verticillioides and F. graminearum, respectively) on fungal growth and mycotoxin production of acclimatised isolates of F. verticillioides and F. graminearum isolated from maize. To determine fungal growth, the colony diameters were measured on days 1, 3, 5, and 7. The mycotoxins produced were quantified using a quadrupole-time-of-flight mass spectrometer (QTOF-MS) combined with ultra-high-performance liquid chromatography (UHPLC) system. For F. verticillioides, the optimum conditions for growth of fumonisin B1 (FB1), and fumonisin B2 (FB2) were 30 °C + 0.98 aw + 400 ppm CO2. These conditions were also optimum for F. graminearum growth, and zearalenone (ZEA) and deoxynivalenol (DON) production. Since 30 °C and 400 ppm CO2 were the baseline treatments, it was hence concluded that the elevated temperature and CO2 levels tested did not seem to significantly impact fungal growth and mycotoxin production of acclimatised Fusarium isolates. To the best of our knowledge thus far, the present work described for the first time the effects of simulated climate change conditions on fungal growth and mycotoxin production of acclimatised isolates of F. verticillioides and F. graminearum.