Displaying publications 1 - 20 of 30 in total

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  1. Detection of abnormality in wireless capsule endoscopy images using fractal features
    Jain S, Seal A, Ojha A, Krejcar O, Bureš J, Tachecí I, et al.
    Comput Biol Med, 2020 12;127:104094.
    PMID: 33152668 DOI: 10.1016/j.compbiomed.2020.104094
    One of the most recent non-invasive technologies to examine the gastrointestinal tract is wireless capsule endoscopy (WCE). As there are thousands of endoscopic images in an 8-15 h long video, an evaluator has to pay constant attention for a relatively long time (60-120 min). Therefore the possibility of the presence of pathological findings in a few images (displayed for evaluation for a few seconds only) brings a significant risk of missing the pathology with all negative consequences for the patient. Hence, manually reviewing a video to identify abnormal images is not only a tedious and time consuming task that overwhelms human attention but also is error prone. In this paper, a method is proposed for the automatic detection of abnormal WCE images. The differential box counting method is used for the extraction of fractal dimension (FD) of WCE images and the random forest based ensemble classifier is used for the identification of abnormal frames. The FD is a well-known technique for extraction of features related to texture, smoothness, and roughness. In this paper, FDs are extracted from pixel-blocks of WCE images and are fed to the classifier for identification of images with abnormalities. To determine a suitable pixel block size for FD feature extraction, various sizes of blocks are considered and are fed into six frequently used classifiers separately, and the block size of 7×7 giving the best performance is empirically determined. Further, the selection of the random forest ensemble classifier is also done using the same empirical study. Performance of the proposed method is evaluated on two datasets containing WCE frames. Results demonstrate that the proposed method outperforms some of the state-of-the-art methods with AUC of 85% and 99% on Dataset-I and Dataset-II respectively.
    Matched MeSH terms: Fractals
  2. Fulltext Mathematical Modelling and Prediction of the Effect of Chemotherapy on Cancer Cells
    Namazi H, Kulish VV, Wong A
    Sci Rep, 2015;5:13583.
    PMID: 26316014 DOI: 10.1038/srep13583
    Cancer is a class of diseases characterized by out-of-control cells' growth which affect DNAs and make them damaged. Many treatment options for cancer exist, with the primary ones including surgery, chemotherapy, radiation therapy, hormonal therapy, targeted therapy and palliative care. Which treatments are used depends on the type, location, and grade of the cancer as well as the person's health and wishes. Chemotherapy is the use of medication (chemicals) to treat disease. More specifically, chemotherapy typically refers to the destruction of cancer cells. Considering the diffusion of drugs in cancer cells and fractality of DNA walks, in this research we worked on modelling and prediction of the effect of chemotherapy on cancer cells using Fractional Diffusion Equation (FDE). The employed methodology is useful not only for analysis of the effect of special drug and cancer considered in this research but can be expanded in case of different drugs and cancers.
    Matched MeSH terms: Fractals
  3. Characterization of aerobic granular sludge treating high strength agro-based wastewater at different volumetric loadings
    Abdullah N, Yuzir A, Curtis TP, Yahya A, Ujang Z
    Bioresour Technol, 2013 Jan;127:181-7.
    PMID: 23131639 DOI: 10.1016/j.biortech.2012.09.047
    Understanding the relationship between microbial community and mechanism of aerobic granulation could enable wider applications of granules for high-strength wastewater treatment. The majority of granulation studies principally determine the engineering aspects of granules formation with little emphasis on the microbial diversity. In this study, three identical reactors namely R1, R2 and R3 were operated using POME at volumetric loadings of 1.5, 2.5 and 3.5 kg COD m(-3) d(-1), respectively. Aeration was provided at a volumetric flow rate of 2.5 cms(-1). Aerobic granules were successfully developed in R2 and R3 while bioflocs dominated R1 until the end of experiments. Fractal dimension (D(f)) averaged at 1.90 suggesting good compactness of granules. The PCR-DGGE results indicated microbial evolutionary shift throughout granulation despite different operating OLRs based on decreased Raup and Crick similarity indices upon mature granule formation. The characteristics of aerobic granules treating high strength agro-based wastewater are determined at different volumetric loadings.
    Matched MeSH terms: Fractals
  4. Rheological and fractal hydrodynamics of aerobic granules
    Tijani HI, Abdullah N, Yuzir A, Ujang Z
    Bioresour Technol, 2015 Jun;186:276-85.
    PMID: 25836036 DOI: 10.1016/j.biortech.2015.02.107
    The structural and hydrodynamic features for granules were characterized using settling experiments, predefined mathematical simulations and ImageJ-particle analyses. This study describes the rheological characterization of these biologically immobilized aggregates under non-Newtonian flows. The second order dimensional analysis defined as D2=1.795 for native clusters and D2=1.099 for dewatered clusters and a characteristic three-dimensional fractal dimension of 2.46 depicts that these relatively porous and differentially permeable fractals had a structural configuration in close proximity with that described for a compact sphere formed via cluster-cluster aggregation. The three-dimensional fractal dimension calculated via settling-fractal correlation, U∝l(D) to characterize immobilized granules validates the quantitative measurements used for describing its structural integrity and aggregate complexity. These results suggest that scaling relationships based on fractal geometry are vital for quantifying the effects of different laminar conditions on the aggregates' morphology and characteristics such as density, porosity, and projected surface area.
    Matched MeSH terms: Fractals
  5. Automated classification of patients with coronary artery disease using grayscale features from left ventricle echocardiographic images
    Acharya UR, Sree SV, Muthu Rama Krishnan M, Krishnananda N, Ranjan S, Umesh P, et al.
    Comput Methods Programs Biomed, 2013 Dec;112(3):624-32.
    PMID: 23958645 DOI: 10.1016/j.cmpb.2013.07.012
    Coronary Artery Disease (CAD), caused by the buildup of plaque on the inside of the coronary arteries, has a high mortality rate. To efficiently detect this condition from echocardiography images, with lesser inter-observer variability and visual interpretation errors, computer based data mining techniques may be exploited. We have developed and presented one such technique in this paper for the classification of normal and CAD affected cases. A multitude of grayscale features (fractal dimension, entropies based on the higher order spectra, features based on image texture and local binary patterns, and wavelet based features) were extracted from echocardiography images belonging to a huge database of 400 normal cases and 400 CAD patients. Only the features that had good discriminating capability were selected using t-test. Several combinations of the resultant significant features were used to evaluate many supervised classifiers to find the combination that presents a good accuracy. We observed that the Gaussian Mixture Model (GMM) classifier trained with a feature subset made up of nine significant features presented the highest accuracy, sensitivity, specificity, and positive predictive value of 100%. We have also developed a novel, highly discriminative HeartIndex, which is a single number that is calculated from the combination of the features, in order to objectively classify the images from either of the two classes. Such an index allows for an easier implementation of the technique for automated CAD detection in the computers in hospitals and clinics.
    Matched MeSH terms: Fractals
  6. Fractal characterization of bpn weights evolution
    Gunasekaran S, Venkatesh B, Sagar BS
    Int J Neural Syst, 2004 Apr;14(2):139-45.
    PMID: 15112371
    Training methodology of the Back Propagation Network (BPN) is well documented. One aspect of BPN that requires investigation is whether or not the BPN would get trained for a given training data set and architecture. In this paper the behavior of the BPN is analyzed during its training phase considering convergent and divergent training data sets. Evolution of the weights during the training phase was monitored for the purpose of analysis. The evolution of weights was plotted as return map and was characterized by means of fractal dimension. This fractal dimensional analysis of the weight evolution trajectories is used to provide a new insight to understand the behavior of BPN and dynamics in the evolution of weights.
    Matched MeSH terms: Fractals*
  7. Fulltext A signal processing based analysis and prediction of seizure onset in patients with epilepsy
    Namazi H, Kulish VV, Hussaini J, Hussaini J, Delaviz A, Delaviz F, et al.
    Oncotarget, 2016 Jan 5;7(1):342-50.
    PMID: 26586477 DOI: 10.18632/oncotarget.6341
    One of the main areas of behavioural neuroscience is forecasting the human behaviour. Epilepsy is a central nervous system disorder in which nerve cell activity in the brain becomes disrupted, causing seizures or periods of unusual behaviour, sensations and sometimes loss of consciousness. An estimated 5% of the world population has epileptic seizure but there is not any method to cure it. More than 30% of people with epilepsy cannot control seizure. Epileptic seizure prediction, refers to forecasting the occurrence of epileptic seizures, is one of the most important but challenging problems in biomedical sciences, across the world. In this research we propose a new methodology which is based on studying the EEG signals using two measures, the Hurst exponent and fractal dimension. In order to validate the proposed method, it is applied to epileptic EEG signals of patients by computing the Hurst exponent and fractal dimension, and then the results are validated versus the reference data. The results of these analyses show that we are able to forecast the onset of a seizure on average of 25.76 seconds before the time of occurrence.
    Matched MeSH terms: Fractals
  8. Fulltext Characterization of alumina using small angle neutron scattering (sans)
    Megat Harun Al Rashid Megat Ahmad, Abdul Aziz Mohamed, Azmi Ibrahim, Che Seman Mahmood, Putra, Edy Giri Rachman, Muhammad Rawi Muhammad Zin, et al.
    Journal of Nuclear and Related Technologies, 2007;2005(1):19-23.
    MyJurnal
    Alumina powder was synthesized from an aluminum precursor and studied using small angle neutron scattering (SANS) technique and complemented with transmission electron microscope (TEM). XRD measurement confirmed that the alumina produced was of high purity and highly crystalline D-phase. SANS examination indicates the formation of mass fractals microstructures with fractal dimension of about 2.8 on the alumina powder.
    Matched MeSH terms: Fractals
  9. Radioactivity and heat production characterization by natural gamma ray well logging and multi-fractal techniques in banting district, Malaysia
    Asfahani J, Samuding K, Mostapa R, Othman O
    Appl Radiat Isot, 2021 Jan;167:109296.
    PMID: 33022484 DOI: 10.1016/j.apradiso.2020.109296
    Natural gamma ray well logging technique is used to characterize the radioactivity (GR) laterally and vertically in Banting district, SW of Malaysia. Seven drilled boreholes, along N-S profile with their natural gamma ray records are utilized to compute the heat production (HP) parameter, based on the Bucker and Rybach relationship.The analysis of 3467 measured points in those boreholes indicates that GR varies between 6.24 API and 358.4 API with an average of 79.95 API, while HP varies between 0.086 and 5.65 μw/m3 with an average of 1.25 μw/m3.The multi-fractal Concentration-Number (C-N) is used to characterize the radioactivity and heat production variations and to isolate different GR and HP populations in the study region. The high radioactivity and heat production ranges are mainly related to the silty clay layers, accompanied by uranium and thorium.
    Matched MeSH terms: Fractals
  10. Complexity-Based Decoding of the Coupling Among Heart Rate Variability (HRV) and Walking Path
    Mujib Kamal S, Babini MH, Krejcar O, Namazi H
    Front Physiol, 2020;11:602027.
    PMID: 33324242 DOI: 10.3389/fphys.2020.602027
    Walking is an everyday activity in our daily life. Because walking affects heart rate variability, in this research, for the first time, we analyzed the coupling among the alterations of the complexity of walking paths and heart rate. We benefited from the fractal theory and sample entropy to evaluate the influence of the complexity of paths on the complexity of heart rate variability (HRV) during walking. We calculated the fractal exponent and sample entropy of the R-R time series for nine participants who walked on four paths with various complexities. The findings showed a strong coupling among the alterations of fractal dimension (an indicator of complexity) of HRV and the walking paths. Besides, the result of the analysis of sample entropy also verified the obtained results from the fractal analysis. In further studies, we can analyze the coupling among the alterations of the complexities of other physiological signals and walking paths.
    Matched MeSH terms: Fractals
  11. Decoding of the relationship between human brain activity and walking paths
    Kamal SM, Sim S, Tee R, Nathan V, Aghasian E, Namazi H
    Technol Health Care, 2020;28(4):381-390.
    PMID: 31796717 DOI: 10.3233/THC-191965
    BACKGROUND: The human brain controls all actions of the body. Walking is one of the most important actions that deals with the movement of the body. In fact, the brain controls and regulates human walking based on different conditions. One of the conditions that affects human walking is the complexity of path of movement. Therefore, the brain activity should change when a person walks on a path with different complexities.

    OBJECTIVE: In this research we benefit from fractal analysis to study the effect of complexity of path of movement on the complexity of human brain reaction.

    METHODS: For this purpose we calculate the fractal dimension of the electroencephalography (EEG) signal when subjects walk on different paths with different fractal dimensions (complexity).

    RESULTS: The results of the analysis show that the complexity of brain activity increases with the increment of complexity of path of movement.

    CONCLUSION: The method of analysis employed in this research can also be employed to analyse the reaction of the human heart and respiration when subjects move on paths with different complexities.

    Matched MeSH terms: Fractals
  12. Detection of Voice Pathology using Fractal Dimension in a Multiresolution Analysis of Normal and Disordered Speech Signals
    Ali Z, Elamvazuthi I, Alsulaiman M, Muhammad G
    J Med Syst, 2016 Jan;40(1):20.
    PMID: 26531753 DOI: 10.1007/s10916-015-0392-2
    Voice disorders are associated with irregular vibrations of vocal folds. Based on the source filter theory of speech production, these irregular vibrations can be detected in a non-invasive way by analyzing the speech signal. In this paper we present a multiband approach for the detection of voice disorders given that the voice source generally interacts with the vocal tract in a non-linear way. In normal phonation, and assuming sustained phonation of a vowel, the lower frequencies of speech are heavily source dependent due to the low frequency glottal formant, while the higher frequencies are less dependent on the source signal. During abnormal phonation, this is still a valid, but turbulent noise of source, because of the irregular vibration, affects also higher frequencies. Motivated by such a model, we suggest a multiband approach based on a three-level discrete wavelet transformation (DWT) and in each band the fractal dimension (FD) of the estimated power spectrum is estimated. The experiments suggest that frequency band 1-1562 Hz, lower frequencies after level 3, exhibits a significant difference in the spectrum of a normal and pathological subject. With this band, a detection rate of 91.28 % is obtained with one feature, and the obtained result is higher than all other frequency bands. Moreover, an accuracy of 92.45 % and an area under receiver operating characteristic curve (AUC) of 95.06 % is acquired when the FD of all levels is fused. Likewise, when the FD of all levels is combined with 22 Multi-Dimensional Voice Program (MDVP) parameters, an improvement of 2.26 % in accuracy and 1.45 % in AUC is observed.
    Matched MeSH terms: Fractals*
  13. Fulltext Zone specific fractal dimension of retinal images as predictor of stroke incidence
    Aliahmad B, Kumar DK, Hao H, Unnikrishnan P, Che Azemin MZ, Kawasaki R, et al.
    ScientificWorldJournal, 2014;2014:467462.
    PMID: 25485298 DOI: 10.1155/2014/467462
    Fractal dimensions (FDs) are frequently used for summarizing the complexity of retinal vascular. However, previous techniques on this topic were not zone specific. A new methodology to measure FD of a specific zone in retinal images has been developed and tested as a marker for stroke prediction. Higuchi's fractal dimension was measured in circumferential direction (FDC) with respect to optic disk (OD), in three concentric regions between OD boundary and 1.5 OD diameter from its margin. The significance of its association with future episode of stroke event was tested using the Blue Mountain Eye Study (BMES) database and compared against spectrum fractal dimension (SFD) and box-counting (BC) dimension. Kruskal-Wallis analysis revealed FDC as a better predictor of stroke (H = 5.80, P = 0.016, α = 0.05) compared with SFD (H = 0.51, P = 0.475, α = 0.05) and BC (H = 0.41, P = 0.520, α = 0.05) with overall lower median value for the cases compared to the control group. This work has shown that there is a significant association between zone specific FDC of eye fundus images with future episode of stroke while this difference is not significant when other FD methods are employed.
    Matched MeSH terms: Fractals*
  14. Age-related rarefaction in retinal vasculature is not linear
    Che Azemin MZ, Ab Hamid F, Aminuddin A, Wang JJ, Kawasaki R, Kumar DK
    Exp Eye Res, 2013 Nov;116:355-358.
    PMID: 24512773 DOI: 10.1016/j.exer.2013.10.010
    The fractal dimension is a global measure of complexity and is useful for quantifying anatomical structures, including the retinal vascular network. A previous study found a linear declining trend with aging on the retinal vascular fractal dimension (DF); however, it was limited to the older population (49 years and older). This study aimed to investigate the possible models of the fractal dimension changes from young to old subjects (10-73 years). A total of 215 right-eye retinal samples, including those of 119 (55%) women and 96 (45%) men, were selected. The retinal vessels were segmented using computer-assisted software, and non-vessel fragments were deleted. The fractal dimension was measured based on the log-log plot of the number of grids versus the size. The retinal vascular DF was analyzed to determine changes with increasing age. Finally, the data were fitted to three polynomial models. All three models are statistically significant (Linear: R2 = 0.1270, 213 d.f., p 
    Matched MeSH terms: Fractals
  15. Fulltext Fractional Diffusion Based Modelling and Prediction of Human Brain Response to External Stimuli
    Namazi H, Kulish VV
    Comput Math Methods Med, 2015;2015:148534.
    PMID: 26089955 DOI: 10.1155/2015/148534
    Human brain response is the result of the overall ability of the brain in analyzing different internal and external stimuli and thus making the proper decisions. During the last decades scientists have discovered more about this phenomenon and proposed some models based on computational, biological, or neuropsychological methods. Despite some advances in studies related to this area of the brain research, there were fewer efforts which have been done on the mathematical modeling of the human brain response to external stimuli. This research is devoted to the modeling and prediction of the human EEG signal, as an alert state of overall human brain activity monitoring, upon receiving external stimuli, based on fractional diffusion equations. The results of this modeling show very good agreement with the real human EEG signal and thus this model can be used for many types of applications such as prediction of seizure onset in patient with epilepsy.
    Matched MeSH terms: Fractals
  16. Fulltext Diagnosis of Lung Cancer by Fractal Analysis of Damaged DNA
    Namazi H, Kiminezhadmalaie M
    Comput Math Methods Med, 2015;2015:242695.
    PMID: 26539245 DOI: 10.1155/2015/242695
    Cancer starts when cells in a part of the body start to grow out of control. In fact cells become cancer cells because of DNA damage. A DNA walk of a genome represents how the frequency of each nucleotide of a pairing nucleotide couple changes locally. In this research in order to study the cancer genes, DNA walk plots of genomes of patients with lung cancer were generated using a program written in MATLAB language. The data so obtained was checked for fractal property by computing the fractal dimension using a program written in MATLAB. Also, the correlation of damaged DNA was studied using the Hurst exponent measure. We have found that the damaged DNA sequences are exhibiting higher degree of fractality and less correlation compared with normal DNA sequences. So we confirmed this method can be used for early detection of lung cancer. The method introduced in this research not only is useful for diagnosis of lung cancer but also can be applied for detection and growth analysis of different types of cancers.
    Matched MeSH terms: Fractals
  17. Fulltext A Review on the Extraction of Quantitative Retinal Microvascular Image Feature
    Kipli K, Hoque ME, Lim LT, Mahmood MH, Sahari SK, Sapawi R, et al.
    Comput Math Methods Med, 2018;2018:4019538.
    PMID: 30065780 DOI: 10.1155/2018/4019538
    Digital image processing is one of the most widely used computer vision technologies in biomedical engineering. In the present modern ophthalmological practice, biomarkers analysis through digital fundus image processing analysis greatly contributes to vision science. This further facilitates developments in medical imaging, enabling this robust technology to attain extensive scopes in biomedical engineering platform. Various diagnostic techniques are used to analyze retinal microvasculature image to enable geometric features measurements such as vessel tortuosity, branching angles, branching coefficient, vessel diameter, and fractal dimension. These extracted markers or characterized fundus digital image features provide insights and relates quantitative retinal vascular topography abnormalities to various pathologies such as diabetic retinopathy, macular degeneration, hypertensive retinopathy, transient ischemic attack, neovascular glaucoma, and cardiovascular diseases. Apart from that, this noninvasive research tool is automated, allowing it to be used in large-scale screening programs, and all are described in this present review paper. This paper will also review recent research on the image processing-based extraction techniques of the quantitative retinal microvascular feature. It mainly focuses on features associated with the early symptom of transient ischemic attack or sharp stroke.
    Matched MeSH terms: Fractals
  18. Fusion of spatial gray level dependency and fractal texture features for the characterization of thyroid lesions
    Raghavendra U, Rajendra Acharya U, Gudigar A, Hong Tan J, Fujita H, Hagiwara Y, et al.
    Ultrasonics, 2017 05;77:110-120.
    PMID: 28219805 DOI: 10.1016/j.ultras.2017.02.003
    Thyroid is a small gland situated at the anterior side of the neck and one of the largest glands of the endocrine system. The abrupt cell growth or malignancy in the thyroid gland may cause thyroid cancer. Ultrasound images distinctly represent benign and malignant lesions, but accuracy may be poor due to subjective interpretation. Computer Aided Diagnosis (CAD) can minimize the errors created due to subjective interpretation and assists to make fast accurate diagnosis. In this work, fusion of Spatial Gray Level Dependence Features (SGLDF) and fractal textures are used to decipher the intrinsic structure of benign and malignant thyroid lesions. These features are subjected to graph based Marginal Fisher Analysis (MFA) to reduce the number of features. The reduced features are subjected to various ranking methods and classifiers. We have achieved an average accuracy, sensitivity and specificity of 97.52%, 90.32% and 98.57% respectively using Support Vector Machine (SVM) classifier. The achieved maximum Area Under Curve (AUC) is 0.9445. Finally, Thyroid Clinical Risk Index (TCRI) a single number is developed using two MFA features to discriminate the two classes. This prototype system is ready to be tested with huge diverse database.
    Matched MeSH terms: Fractals
  19. Fulltext Fractal dimension algorithm for automatic detection of oil spills in RADARSAT-1 SAR
    Marghany, M., Cracknell, A.P., Hashim, M.
    ASM Science Journal, 2009;3(1):7-16.
    MyJurnal
    This paper introduces a method for modification of the formula of the fractal box counting dimension. The method is based on the utilization of the probability distribution formula in the fractal box count. The purpose of this method is to use it for the discrimination of oil spill areas from the surrounding features e.g. sea surface and look-alikes in RADARSAT-1 SAR data. The result showed that the new formula of the fractal box counting dimension was able to discriminate between oil spills and look-alike areas. The low wind area had the highest fractal dimension peak of 2.9, as compared to the oil slick and the surrounding rough sea. The maximum error standard deviation of the low wind area was 0.68 which performed with a 2.9 fractal dimension value.
    Matched MeSH terms: Fractals
  20. Ion conductive polymer electrolyte membranes and simulation of their fractal growth patterns
    Amir S, Mohamed N, Hashim Ali S
    Sains Malaysiana, 2011;40:1123-1127.
    Due to their high ionic conductivity, solid polymer electrolyte (SPE) systems have attracted wide spread attention as the most appropriate choice to fabricate all-solid-state electrochemical devices, namely batteries, sensors and fuel cells. In this work, ion conductive polymer electrolyte membranes have been prepared for battery fabrication. However, fractals were found to grow in these polymer electrolyte membranes weeks after they were prepared. It was believed that the formation of fractal aggregates in these membranes were due to ionic movement. The discovery of fractal growth pattern can be used to understand the effects of such phenomenon in the polymer electrolyte membranes. Digital images of the fractal growth patterns were taken and a simulation model was developed based on the Brownian motion theory and a fractal dialect known as L-system. A computer coding has been designed to simulate and visualize the fractal growth.
    Matched MeSH terms: Fractals
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